Zootoca vivipara (common lizard): 118085947
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Entry
118085947 CDS
T07275
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03015
mRNA surveillance pathway
zvi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118085947 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118085947 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zvi03021
]
118085947 (SYMPK)
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118085947 (SYMPK)
Transcription machinery [BR:
zvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118085947 (SYMPK)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118085947 (SYMPK)
U7-dependent histone pre-mRNA processing factors
118085947 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
Cnd1
SR-25
INTS7_N
Motif
Other DBs
NCBI-GeneID:
118085947
NCBI-ProteinID:
XP_034972981
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All DBs
Position
LG6:17494879..17513812
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AA seq
1337 aa
AA seq
DB search
MAGISNMGDSGLSRMSIASQFFAGEETSGIDTMTTSERVVDLLNQAALISNDSKITILKQ
VQELIINKDPTLLDNFLDEIIAFQADKSVEVRKFVIGFIEEACKRDTELLLKLIANLNML
LRDENVNVVKKAILAMTQLYKVALQWMVKSRVINDMQEACWEMVSAMTSEIIQLLDSDND
GIRTHAIKFVEALIITLSPRMPDSEVPRRHENDISLNRVPEDHPYIKYNVLWEEGKTALD
QLLKFMVHPAISSINLTAALGSLASIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSV
RKNLKLHLLSVLKHPASVEFQAQITTLLMDLGTQQAEITRNMPNLKELRKRPRDESDPAM
KKMKLEPTLGEDDEDKDLEQVAAPAPKPSIQVSTQSDTDITAEFLQPLLTPDNVANLVLI
SMVYLPENMPASFQATYTPVESAGTEVQIKHLARLMATQMTAAGLGPGVEQTKQVKESLK
EEKMLKPESVLIKRRFSALSTGQAISVLGAQQGSAPPTEPGVPQPKRRPEPIIPATQPRL
AGASGRKKIFRLSDVIKPLTDVQMDKLKVAAVKRILRSEKAVACSGAAHARVKILSSLVT
QFEVPLKSEVLTFILDDIRNRLDLAFAWLYQEYNAYLSQYPAGSLDNYDECLIGLLSGLQ
EKPDQKDGIFTKMVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYL
HVLLDLSSHEKDKVRQQALLFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVLFGADK
DTEVAAPWTEETIKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGM
GMNSRELLRLVKNCPKGAETLVTRCLHSLTDKVPPSPELVTRVRDLYNKRLPDVRFLIPV
LNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGELLIALHNIDS
TKCDMKSIIKATNMCFAERNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGG
FVMNILSRLILKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLSAVFEKCPELREP
LLAHVRSFTPHQQAHVPNSTMAILEASNKQDIEGKELQPLEEARGSAPPRTKELRREREE
EMEPQLLLPRVSQDMIALRLAQEKALKRQLEEEQKLKQQQQPPRPAAPKTPLPSEESVDL
QEEVPEVETPTIFISMQEEDESFGGDSSQLDSSLEGPWPPKELQSKERAARSRSSSSSSS
SSSSSSSSSSSSSSSDEGSSSKPPTAKQATLSLEEEEPAADGGAPPPAPSSALAANSPSP
AEELPDPIVEQEQKADS
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggctggcataagcaacatgggcgactctggcctgtcccgcatgagcatcgcctcccag
ttctttgccggggaggagacgtctggcatagacaccatgactacctcggagagggtggtg
gatttgctaaatcaagctgccttaatcagcaatgattccaaaatcacaatcctcaaacag
gtccaggaattgattataaacaaagatcccacacttttggataatttcctggatgagatc
attgctttccaggcagacaaatctgttgaggttcggaagtttgtcattgggttcatagag
gaagcctgcaaacgggacaccgagctgcttctcaagcttattgctaacctcaacatgctg
ttgagggatgaaaatgtcaatgtggtgaagaaggccatcctcgccatgactcagttgtat
aaggtggcgctgcagtggatggtgaaatccagagtgatcaacgacatgcaggaggcctgc
tgggagatggtgtccgccatgaccagtgaaatcatccagctgctggactcggacaatgac
ggcatacgcacccatgccatcaagttcgtggaggcgctgatcatcaccctctctccccgg
atgccggactcggaggtgcccaggcgccatgagaacgacatcagcctcaaccgtgtcccc
gaggaccacccctacatcaaatacaacgttctgtgggaagaagggaagacagcgctggat
cagctgttgaagttcatggtccacccagctatctccagcatcaacctgaccgccgcactg
ggctccttggcctccatcgcccgccagcggcccatgttcatgtcggaggtgatccaggcc
tatgagacactgcacgccaacctccccccgacgctggccaagtcccaggtgagcagcgtg
cggaagaacctcaagctgcacctgttgagcgtcctcaagcacccagcgtccgtggagttc
caggcccagatcaccaccctgctgatggacctgggcacacagcaggccgagatcacccgc
aacatgcctaacctgaaggagctccgcaaacgcccacgggatgagagtgaccctgccatg
aagaagatgaagctggagccaactcttggggaggatgatgaggataaagacctggagcag
gtggcagccccagctcccaagccctccatccaagtcagcacacagtcggacacggacatc
accgctgagtttctacagccccttctgactccagataatgtggccaacctggtgctcatc
agcatggtatacctgcctgaaaacatgcctgcttccttccaagctacctataccccagtg
gaatctgctggcactgaggtccagatcaagcaccttgcccgcctcatggccacccagatg
acggcagctgggctagggccaggtgtggagcaaaccaagcaggtcaaggagtcgctgaaa
gaagagaaaatgctcaaaccggaaagcgtgctgatcaagcggcgcttctctgctctcagt
acaggccaggccatttctgtgttgggagcccaacaaggctctgccccccccactgagcct
ggggtgccgcagcccaagcggcgcccagaaccaatcatccctgccactcagcccaggttg
gccggtgccagcggccgcaaaaagattttccgcctgagcgacgtgatcaagcctctcacg
gatgtgcagatggacaagctgaaggtggcggccgtgaagcggatcctgcgctccgagaag
gccgtggcctgcagtggggctgcccatgcccgggtgaagatcctctcttctctggtgacc
cagtttgaggtccctctcaagagcgaagtcctgaccttcatcctggatgacatccgcaac
cgcttggacctcgcctttgcctggttgtaccaggagtacaatgcttacctgagccaatac
cccgctggctcgctcgacaactacgatgagtgtctcatcggcctgctctccggtctgcag
gagaagccggaccaaaaagatgggatctttaccaagatggtacttgaggccccactgatc
accgagagtgccctggaagtgattcggaagtattgtgaagatgagagccggacgtacctg
ggcatgtcgacacttcgggacctgatcttcaagcgcccgtcgaggcagttccagtatctg
catgttctcttggatctcagctcccacgagaaggacaaggttcgccagcaagcgctccta
ttcatcaagcggatgtacgagaaggaccagctgcgggaatatgtggagaagtttgcactt
aattatttgcagctcctggtccaccccaaccctccctctgttctctttggcgcagacaaa
gatacagaggtggctgctccctggacagaagagaccatcaagcaatgcctctatctctac
ttggccctccttccccagaaccacaaactgatccatgaactggcatctgtatacacggag
gccattgctgacatcaagcgcactgtcctcagggttattgagcagcctatccgtgggatg
gggatgaattcccgagagctgctcaggctggttaaaaactgccccaaaggtgcagagacc
ctggtgacccgctgtctgcacagcctaacggacaaagttcccccatctccagagcttgtg
acacgagttcgagatctgtacaacaagaggctcccagacgtccggttccttatccctgtc
ctcaatggtttggagaagaaagaggtgatccaggccctgccgaagctcattaagctgaat
cccattgttgtgaaggaggttttcaaccgcctcttgggaacacaacacggtgaaggcaac
tctgcagtttctcctctgaatcctggagagttgttgattgccctccacaacatcgactcc
accaagtgtgacatgaagtccatcatcaaagccaccaacatgtgctttgctgagcgcaac
gtgtacacgtctgaggtgctggccgtggtgatgcagcagctcatggagcaaaacccacta
cccatgctccttatgcggaccgtgatccagtcactgacgatgtacccacgcctgggcggc
ttcgtcatgaacatcctctcccgactcatcttgaagcaggtgtggaagtaccccaaggtc
tgggagggtttcatcaagtgctgccagcggaccaagccccagtccttccaagtcatcctc
cagttacctccccagcagctctctgccgtcttcgagaagtgcccagagctgcgggagcct
ctgctggcccatgtccgctccttcactccgcatcagcaagctcacgttcccaattccacc
atggccatcctagaagccagcaacaagcaagacattgaagggaaggagttgcagcctctg
gaggaggcgaggggctcagccccgcccaggaccaaggagctgagaagagagagagaggaa
gaaatggagcctcagctcctcctgcctcgcgtgtcccaggatatgattgccctgcgcttg
gcgcaggagaaggccctcaagcgtcagctggaggaggagcagaaactgaagcagcagcag
cagcctccccgcccagcagcccccaagaccccactcccttccgaggaatctgtggacttg
caggaggaggtgcctgaagtggagactcccaccatcttcatcagcatgcaggaggaagac
gagagctttggaggagacagctcccagctggattccagcttagagggcccctggccaccc
aaggagctgcagagcaaggaaagagcagccagaagcagaagcagcagtagcagcagcagc
agcagtagcagcagcagcagtagcagcagcagcagcagcagctcagatgagggatcctca
agcaagccacccacagccaagcaagccaccctctccctcgaggaggaggagccggctgca
gacggtggggcaccacctcctgccccttcctctgctctggctgcaaactctcccagccca
gcagaggaactgccggaccccattgtggagcaagagcagaaagcagacagctga
DBGET
integrated database retrieval system