Zootoca vivipara (common lizard): 118088012
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Entry
118088012 CDS
T07275
Symbol
COL16A1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
zvi
Zootoca vivipara (common lizard)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
118088012
NCBI-ProteinID:
XP_034977071
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All DBs
Position
LG6:complement(38385287..38514980)
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AA seq
1623 aa
AA seq
DB search
MWGTPFSILCLFGIIFGTSRGGKLLAPQEGEKCPQMQKEGLRLDQTSDQYVNITGFNLIK
RFALLKTSAIKKIRNPKGPMILRLGSTPLVRPTEQLFPRGLPDEFTLVVTLLLKKQTSKE
NWYLFQATDRQGYPQLSLGINSKEQSLEFQAKGQDKDFVSAIFAGKGVSALFDLKWHKMV
LSIQSQVVSIHIDCSYISSKPLQPRRRLAREGNAFVGLDAVQGAPVTFDIQQLHIYCDPA
MAMHEGCCEISDNGCFPEASKTRRDVEVMQSNDLIEINPQTEGKVYTRCFCLEETQSKQE
EVRSSGMVGVKDGQGDKCPPCSQKSQLSNATLGPPGLKGGKGERGPPGVYGSKGEKGDRG
ADCVRISPEAPLQCAEGPQGEKGDQGEKGPPGLAGTVGQKGQKGDKGDFGLQGKPGSPGR
DGRPGEICVVGPKGQKGDPGFVGPEGLAGEPGPPGRPGPPGVGLPGKPGDPGGPPGPKGE
KGGSGPPGPGGSSGKPGKPGVPGLKGDKGDPCEVCPTIPDGNNAVSLPGKPGPKGEPGPP
GKPGKSDKPGPPGLKGSRGDPGINGIKGEKGDQCQSCSPAALQLQKEAPKGEPGPPGIGL
PGLPGKDGLPGLSGLKGEKGDSGAVGPAGKAGARGSKGDTGDSGVKGEKGAPCTECPASL
EGREAMVSIPGPPGEKGEPGLPGTGLPGKPGKPGESGTKGQKGASGSPGDPGIPGTAGLP
GLSGEPGVRGPSGAKGEKGDACDSCPTLNGDLSGAVGIPGKPGSKGDRGLPGVGQPGKPG
KPGLPGVQGPPGLKGLQGEPGPPGIGIQGPEGEIGQKGSPGNPGSPGPRGPPGNVGGKGE
KGSPGLKGAIGPTGPPGASVTGPPGREGQQGLPGVPGSDGSKGERGARGEKGDSGECSCQ
PGPRVDSSNIGLPGAPGLWIGTSWQPQPGPQGPPGVPGPPGPPGAPGRQGIPGHNGLPGL
PGTVGDLGPLAAESMAVLKNICGDCANIQASQVPGTTKGEKGDQGMPGAPGIDNCARCFA
LYPRAEEARGDSSNDQDCAGGPGHPGIPGLPGERGEQGLPGPRGPPGPIGPPGFPGTPGA
PGLPGLQGERGSPGLPGSKGESGPPGQPGYPGSMGPPGLPGSKGERGYVGSSGEKGESGP
PGLDGPAGPPGPAGPRGERGLPGSGGEKGDQGFQGQPGFPGPPGPPGFPGKAGPPGPPGP
PAEKGSDGMRGSPGMAGPPGPPGPPGIQGPPGLEGLDGKDGKPGLRGDPGTAGPPGRMGP
PGFKGKTGHPGLPGQKGDCGTAGPPGNPGRTGAEGEPGPMGPQGRPGPPGHLGPPGSPGQ
PGPAGLSGVGLKGERGSPGERGLSGIPGQPGPPGHPGPPGESGSDGQVGKEGAAGKPGPP
GPSGPKGEPGSVGERGHPGEKGRAGMPGGPGKSGEMGPIGPRGPSGERGQPGPPGPSGSP
GNPGLPGTMADAINYDEIRRFIRQELNKMFDERMAYYTSRMQFPVEVAAQPGRPGPPGKD
GTPGRQGSPGPPGMPGQIGREGRQGVPGMRGEPGAKGEKGDKGIGIMGETGPPGPQGIQG
PPGYGKIGLPGPMGQQGIPGIPGPPGITGPPGKTGHCNPSDCFGMMPLEQPMYQPKNMKG
PLG
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atgtggggaacccccttttccatcttgtgcttgtttggcatcatctttggcaccagcaga
ggagggaaattgcttgctcctcaggaaggcgagaaatgtccacaaatgcagaaggaaggt
ctccggctggaccagactagtgaccaatatgtaaatataactggatttaatctaattaaa
aggtttgctctgctgaagacctcagccattaagaagatccgaaaccccaaaggcccaatg
atcctgcgactgggcagcacccctctggtccgaccaacggaacagctgttcccccggggc
ttgcctgatgaattcaccctggtggtgactctactcttgaagaaacagaccagcaaagag
aactggtacctcttccaggccaccgatcgtcaggggtacccccagctctccttggggatc
aacagcaaagagcagagcctggagttccaagccaagggccaggacaaggactttgtcagc
gccatctttgccggcaaaggggtctccgcccttttcgacttgaagtggcacaaaatggtc
cttagcatccaaagccaagtggtttccatccacatcgactgcagctacatctcctccaag
ccactgcaaccccgccgacgcctggccagagaaggcaacgcatttgttggattggatgct
gtgcagggtgctcctgtcacatttgacattcagcagcttcacatttattgcgacccagcc
atggcaatgcatgagggatgctgtgagatctctgataacgggtgctttcccgaagcatct
aaaactcgccgggatgtggaagtcatgcaaagcaatgacctgatagagatcaatcctcag
actgaaggcaaggtctacacccgctgcttctgcttggaggagacccaaagcaagcaggag
gaggtgagatcttctggaatggttggtgtgaaagatggccaaggtgacaagtgtccccca
tgctcacagaagtcacagctttcaaacgccacgctgggtccgccgggcttaaagggtggg
aaaggcgaacgtggaccaccaggtgtctatggatccaaaggggagaaaggtgatcgtggt
gctgactgtgtccggatctcacctgaagccccattacagtgtgctgaaggcccacaagga
gagaagggagatcaaggagaaaagggacctccaggattggctggaacagttggacaaaag
gggcaaaagggtgataagggtgactttggtcttcaaggaaaaccaggaagcccagggcgt
gatggccggcctggggagatttgtgtggtgggacccaaaggccagaagggcgacccaggg
tttgtgggtcctgaaggtctcgctggggaaccaggacccccaggccggccgggtccacct
ggagttggcctgccaggaaaaccaggtgatcccggtggcccaccaggtcccaaaggagag
aaggggggctcaggacctccagggccaggcggctcaagtggaaagccaggaaaacccggg
gtcccaggcctgaaaggagacaagggggacccatgtgaagtctgccccactatccctgac
gggaacaatgcagtcagcctccctgggaaaccggggcccaaaggggaacctggacctcca
gggaaaccaggcaaatcggacaagcctggccctccaggactcaaaggcagcaggggggac
cctgggatcaatggaattaaaggggagaagggagatcagtgtcagtcatgcagccctgca
gctctgcagcttcagaaagaagcacccaaaggagaaccaggacctccaggaattggcctg
cctggccttcccggcaaagatggccttccggggctgtctggactcaaaggagaaaaggga
gatagtggagctgtaggacctgcaggcaaagctggagcccgagggtccaaaggggacact
ggagattcaggagtcaaaggcgaaaagggagcaccttgtaccgagtgccctgcctctctg
gaaggtcgggaggccatggtttccattccagggcctccaggagagaagggtgagccaggg
cttcccggtactgggcttcctggaaaaccaggaaaacctggggaatctggaacgaaaggt
cagaagggtgcttctggaagcccaggcgatcctggcataccaggcacagcaggtttgcct
ggtctttctggtgaacctggagtcagaggtccgtcaggagctaaaggtgaaaagggtgat
gcttgtgactcctgtcccaccctcaatggagacctctctggtgcggttgggatcccagga
aaaccaggttcaaaaggagaccgtgggcttccaggtgtgggacagccaggcaaacctggg
aaaccaggacttccgggagttcagggacctcctggcttgaaaggactgcagggggagcca
ggtcctccagggataggaatccaaggtccagaaggggaaattggacagaaaggctcacct
ggcaatcctggatccccaggacctcgagggccaccaggaaatgttgggggaaagggggaa
aagggctccccaggtcttaaaggtgccataggacccactgggcctccaggtgccagtgtt
actggcccaccaggccgagaaggccagcagggtctcccgggagttcctggatccgatggt
tcaaagggtgaaaggggagccagaggagagaagggagattctggtgagtgcagctgccag
cctggccctcgcgtggactcgagcaacattggtcttccgggtgccccaggactgtggatc
gggacttcctggcagcctcagccgggccctcagggaccgccaggtgttccaggccctcca
ggcccaccaggagcgcctgggaggcagggcatcccaggacacaatggcttgccgggactg
cctgggacagtgggagacttgggaccactggctgctgagagcatggctgtccttaagaac
atttgtggagactgtgctaacatacaagcttcccaagtccccggcacaaccaaaggcgaa
aagggtgaccaaggcatgccgggagcccctggcatagataattgtgcacggtgctttgct
ctttaccctagagcagaagaggctcggggtgatagtagcaatgaccaagattgtgctgga
ggtcctggccaccctggaatccccggattacctggagagaggggggaacagggcctacca
ggcccaagaggacctcctggaccaattggccccccaggttttcctggaacgcctggcgca
cctggattacctggtctgcagggtgaacgtggatcacctggcctccctggatccaaggga
gaatcgggtcccccaggtcagcccggatatcctggctcaatgggtcctcctgggctacct
ggttctaaaggagaacgaggatacgtggggtcatctggagagaaaggggaatcgggtcct
ccaggattggatggtcctgcagggccccctggaccagcgggtccaagaggagaacgagga
ctgccaggcagcggaggagaaaaaggcgatcagggatttcaaggtcaacctggtttccca
ggaccacctgggccgccaggcttcccagggaaagcaggaccacccggacctccagggcct
ccagcagagaagggtagtgatgggatgcgtggctctcctggcatggcaggcccaccaggg
cctccaggaccccctgggatacaaggtccacctggtttggaaggactagatgggaaggac
ggaaagccagggcttcggggtgacccaggaactgcaggacctccaggaaggatgggacct
ccaggcttcaaagggaaaacaggtcaccccggtctcccgggacaaaagggtgactgtggc
actgcagggccacctgggaatcctggccgaactggagccgagggagagccaggccctatg
ggacctcaaggcagaccaggtcctcccggccaccttggtccccctggaagccctggccag
ccaggcccagcaggactttccggagttgggctgaagggtgagaggggatcgcctggggaa
agaggtctcagtgggattccaggccagccaggcccaccgggtcacccaggcccaccgggc
gagtcaggctcagacggacaagtgggcaaagagggtgcagcaggaaaaccaggccctcct
ggaccctctggaccaaagggtgaaccagggtctgtaggggagagaggacaccctggtgag
aaaggcagagctgggatgccaggagggccaggaaagagtggcgagatgggtcctattggg
ccacgcggcccctctggggagagagggcagcctggtcctcccggtccctcaggaagtcca
gggaacccaggattgcctggaaccatggcggatgccatcaattatgatgaaattcggagg
ttcatcagacaagaactgaacaaaatgtttgatgagcggatggcatattacacctcccgg
atgcagttcccagtggaagtggctgcccagccaggaagaccaggacctcctggtaaagat
ggtacacctggacggcaagggtctccgggtcccccaggaatgccaggacagattgggaga
gagggtcgacaaggtgtgcctggaatgagaggtgagccaggagccaaaggtgaaaaggga
gacaaagggattggaatcatgggagagactggccctccgggtcctcaagggatccaagga
ccaccagggtatggcaagattggtcttccgggacctatgggacagcagggcatcccaggc
atcccaggacccccagggattacagggccgcctggaaaaacaggtcactgcaacccttca
gattgctttggcatgatgcctctggaacagccaatgtatcagcccaaaaacatgaagggg
cctttaggctga
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integrated database retrieval system
