Zootoca vivipara (common lizard): 118088592
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Entry
118088592 CDS
T07275
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zvi03000
]
118088592 (RC3H1)
04121 Ubiquitin system [BR:
zvi04121
]
118088592 (RC3H1)
Transcription factors [BR:
zvi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118088592 (RC3H1)
Ubiquitin system [BR:
zvi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118088592 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
FYVE
zf-RING_10
PaaA_PaaC
Baculo_IE-1
Vesi_VP2
Cupin_1
zf-RING_6
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
118088592
NCBI-ProteinID:
XP_034978311
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All DBs
Position
LG7:complement(89123148..89191117)
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AA seq
1135 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEHLPVNSALLQLVGAQVPEQQPITLRSGAEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLSAAAILSDE
GSMDLPNRKPSALPNGIVSTGSAVTQLISRGTDSSYDSALKPGKIDHLSSSAPGSPPDLL
ESVPKSSLSALPVNSHPVAPRGPADLPPISVGKQLQMVPRGSQLYPAPQTDVFYPDPRGA
GPPFESPPYQSGVYYPAAQPSQCMSRFVRPPPSVPEQGSPYLEHYPPYLQDRMVNSQYTA
QPQQYPPMGQPMYPPHYDSRRMYPPPQPYQREEIIRGSPVPIEIPPPAVSPYVPETRDRY
PQMEGYYPVGPHLSQIRPSYHREPYSRPPPQPHPSLDDLHRRRKEIMAQLEERKVISPPP
FAPSPTLPHSLHTDEYIDEDLKVAGKYKGNDYSQYSPWSCETIGSYIGTKDAKPKDTAAV
GLVEMGNVDSKGMRDQRLDLQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNPGP
MQAMTVQGASTKPGNISDYSPYETHSAWGGSPYSPHQNIPSSQGRPSDRERLSMTDVAGH
GKPLPSSEREQQLRLELQQLNHQISQQTRGLEAVSNRLLLQREATPLAGQPQPPPPPPKW
PGMISSEQLSLELHQVEREIGKRTRELSMESQSSLEVKSKVSASKQTENGQQSKVPAEDV
ALTFSSDVPNGSAPTQESIGLLSSKTAALSLPEDTEAGGGDLDAQRTGATPTSAP
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctttcctgccctatttgcacacaaaca
ttcgacgaaacaatccggaagcctatcagcctgggctgtggccacacagtatgcaagatg
tgcctgaacaagctccaccggaaggcatgccccttcgaccagaccactatcaatacagac
attgagcaccttcctgtgaactcagccttgctgcagcttgtgggtgctcaggtgccagaa
cagcagccaataactctacgtagtggcgctgaagataccaagcattatgaggaagccaag
aaatgtgtggaagaactagccttgtaccttaaaccactcagcagtgcaagaggtgtggga
ctgaacagcaccactcagagtgtactcagtcgccccatgcaaaggaaacttgtgacatta
gtccactgccagttagtggaggaagaagggcgaatcagggctatgcgtgcagcacgatct
ctgggtgaaagaactgtcacagagctcattcttcagcaccagaacccccagcaactctct
tccaacctctgggctgcagtgagggccagaggctgccagttccttggaccagcaatgcag
gaggaagctctcaagttagttcttttggctttggaagatggatctgctttgtctcggaag
gtcttggttctctttgtggtacagaggttggagccacgatttcctcaggcttctaaaacc
agcattgggcatgttgtccagcttctatacagagcctcctgtttcaaggtgactaaacga
gatgaggattcctccctgatgcagttaaaggaggagttccgaacctatgaagctctgaga
cgagaacacgattcccagattgtgcaaattgctatggaggctggtttgcgcattgcccca
gatcagtggtcttcattgctatatggagaccagtcccacaaatcccacatgcagtcaatt
attgacaagttgcagaccccagcctcttttgcacagagtgttcaggaactaactatcgct
ctccagaggactggtgacccagccaatctgaaccggcttcgaccccacctagaactcctt
gcaaatattgatcccagcccagatgccccaccacccacctgggagcagcttgagaatgga
cttgtcgctgtgcggactgtggtacatgggctggtggattacatccaaaatcacagcaaa
aaaggagcagatcagcagcagcctcctcaacacagcaagtataagacatatatgtgccga
gacatgaagcagagaggaggttgcccccgtggggccagctgcacctttgcacactcgcag
gaagaactagaaaaatttcgtaagatgaacaaacgtctggttcctcgaagacccctgagt
gcctccttaggccagctgaatgaggtgggcctatcggcagcagctatcctctcggatgaa
gggagtatggacttgcccaacagaaaaccctctgccttgccaaatgggattgtttcaaca
ggcagtgcagtgacacaactgatctctcgtggaaccgactccagttatgattcagccttg
aagcccgggaaaattgaccatctcagcagcagcgcccctgggtcacctcctgacttgctg
gaatccgttcccaagagttctctatctgccttaccagtgaactctcacccagtggccccc
cgaggacctgcagacctgcctccaatatctgttgggaagcagctccaaatggtgccacga
ggctcccagttgtatccagctccacaaacagatgtgttttacccagatcctcggggagca
ggtccaccatttgaatctccaccttaccaatcaggtgtatattatcctgcagctcagcct
tcgcagtgtatgtctcgatttgtccggcctccaccgtctgttcctgaacaaggctctcct
tatttagaacattacccaccataccttcaggatcgcatggtgaattctcagtacactgca
cagccccaacaatatcctcctatgggacaacccatgtaccctccacattatgacagccgg
cgcatgtacccccctccccagccataccagagggaagaaatcatccgaggaagccctgtg
cccatcgaaattcctccaccagctgtgtcaccatatgtacctgaaacaagagacagatat
ccacaaatggaaggctactatccagttggtccacatctgagtcagatcagaccttcatat
cacagggagccttatagccggcctccccctcagcctcatcccagtctagatgatttgcac
cgacgacgaaaggagatcatggcccagctagaggaaaggaaagtcatctccccacctcct
tttgcaccatcaccaactctgcctcactctttacacactgatgagtatatagatgaagat
ctgaaggtagctggcaaatacaaaggaaatgattatagccagtactctccctggtcatgt
gaaaccattggctcctacattggaaccaaagatgcaaaacccaaagacacagcagcagtg
ggacttgttgagatggggaacgtggatagcaagggaatgcgagaccagcgtttggatttg
cagaggagagcagcagagactggtgacgatgatcttattccatttggagatcggcctacg
gtatcaaggtttggtgccatctcacgtacatctaaggcgatgtatcagaaccctggcccc
atgcaagccatgacagtccaaggggcatctacaaagccaggcaacatttcagattacagc
ccttatgaaacacacagtgcatggggaggttcgccatattcaccccatcaaaacatacct
tcttctcagggacgccctagtgacagggagagattgtctatgacagacgtggctggccat
gggaagcctttgccctcatctgagagggaacagcagcttcgacttgaactgcagcagcta
aaccatcagattagccagcagacacgaggactggaggctgttagtaacaggctgctgttg
cagagggaggcgacccccttggcaggccagccacagcccccaccgccacctcctaagtgg
cctggaatgatctcaagtgaacagctgagcttggagctgcaccaggtggagagggagatc
gggaagagaacccgggagctgagcatggagagtcagtcttcattggaagtgaaaagcaaa
gtgagtgccagtaagcagacagaaaatggacagcaaagcaaggtaccagctgaggatgtt
gcacttacattcagcagtgatgttccaaatggatcagctccaacccaagaaagcattggc
cttctctccagcaaaactgcagctctgagcttgccggaagatactgaagcgggaggaggc
gacttggatgcccagaggacaggagcaacgcctacatctgctccctga
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integrated database retrieval system
