Zootoca vivipara (common lizard): 118088723
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Entry
118088723 CDS
T07275
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zvi03009
]
118088723 (IGHMBP2)
03012 Translation factors [BR:
zvi03012
]
118088723 (IGHMBP2)
Enzymes [BR:
zvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118088723 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
118088723 (IGHMBP2)
Ribosome biogenesis [BR:
zvi03009
]
Eukaryotic type
Other ribosome biogenesis factors
118088723 (IGHMBP2)
Translation factors [BR:
zvi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118088723 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
ResIII
zf-AN1
nSTAND3
Helicase_RecD
DEAD
UvrD-helicase
AAA_16
AAA_22
SLFN-g3_helicase
Flavi_DEAD
IstB_IS21
AAA_25
Zot
AAA
DnaB_C
PhoH
NTPase_1
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
118088723
NCBI-ProteinID:
XP_034978607
LinkDB
All DBs
Position
LG1:75608089..75669947
Genome browser
AA seq
1041 aa
AA seq
DB search
MATVVVQDFVSRQLEMLKEEREAEISEARVWKESFSLKELQRKGVCLLKLEVASQRTGLY
GRLLVTLQPRKHSSETELPCNNFGPGDIVGLYETAGQGDQLSTGLVTRITPKSITIAIDE
PQSNLVSLDQGNSYRLLKLTNDVTYKRLKRALNTLSQYRSGPASGLIDVLFGSSEPSDAN
NIRVTWASRHKFWCQEKHHGLHNITGLKFQLHVTELLKYYNESLDASQKEAVCFSLAQKE
LAIIHGPPGTGKTTTVVEIILQAVQQGLKVLCCAPSNIAVDNLVERLAGCKERILRLGHP
ARLLESIQCHSLDAVLAHGDNAQIVADIRKDIDQAFVKTRKAQDKGERSHFLNEIKTLRK
ELKEREEAAMTEILTKANVILATNTGASSDGPLKLLPENHFDLVVIDECAQAFEASCWIP
LLKARKCVLAGDHKQLPPTIISHKAATEGLSLSLMERLIQKYDDHVVKMLTVQYRMHQTI
MQWASTEMYGGRLSAHCSVAQHLLRDLPGVASTEETCIPLLLIDTAGCGLFELELEDEQS
KGNEGEVRLASLHVQALVEAGVKARDIAVIAPYNLQVDMLRELLCHKYPDLEIKSVDGFQ
GREKEAVVLSFVRSNRKGEVGFLAEDRRLNVAITRARRHVAVICDSRTIGNHIFLKRLVD
YMNQHGEVRTAFEYLDDIVPDNYAAPKSSQGLGDQEKRLKCKTPLALKADGEKPSGKPAK
RTGQRPIEGSVQSPAWGATVDAVVKGNSCKHEAKILEFLESSETQLDFPSSLNAHDRLIV
HRLAEEHGLQHVSTGEGRERYISVRKRGTATDFSLGDAKASEQEWSCRPAGTPKESQASE
QELTCRPPSPSKDTHVYCEESGSRISRKKVDLKTLHMERMQRENAKREERAKQICEPNVN
LQEITGNKHRSEAKGKASVKTKVEGAAEEDFDALISAAIKADNTCGFPKCKASVTTLGQL
CLHCNKCYCLSHHIPEIHGCGEKAKAYARQRISKEASLCARSGLKDKPLDPAKRAHLQRR
LDKKLSELTSQRKSKKKDKEK
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggtggtggttcaggattttgtctctcggcagctggagatgctaaaggaggaa
agggaggccgagatttcggaagccagggtatggaaggaaagtttctccctcaaagagctg
cagcgtaaaggtgtctgcttgctgaaactcgaagtagccagtcaaagaacggggttgtat
ggccgtctgcttgtaactttacaacctagaaagcatagctcagagacagagctgccctgc
aataattttggtcctggtgacattgttggactttatgaaacagcaggccaaggtgatcag
ctctccacaggacttgtcacccgtataacccccaaatcaatcacgattgcaattgatgag
cctcaaagtaaccttgtgagcttggaccaggggaactcctatcgtctgctgaaacttacc
aatgatgtcacatacaagaggcttaaaagggccttaaacacacttagtcagtatcgctcc
gggcctgcatctggtcttattgacgtcctcttcggttcttctgaacctagtgatgccaac
aatataagagtcacctgggccagcagacacaagttctggtgccaagaaaaacaccatggc
ttacacaatataacaggtcttaagtttcagctgcatgttacagagctgttgaagtactac
aatgaatcactggatgcctctcagaaggaggctgtttgcttctcattggcacagaaagag
cttgccatcatccatgggccacctggaacaggcaaaacgactacggtggtggagataata
ctccaagctgttcagcaaggcttgaaagtcttgtgctgtgctccatctaacattgcagtt
gacaacttggtagaaagactcgctggctgtaaagagcggatcctgcgccttggtcaccca
gctcgactcttggagtccatacagtgccattcacttgatgcagttttggcacatggggat
aatgcccagattgtagcagatatcaggaaagatattgatcaagcatttgtgaaaaccaga
aaagcccaagacaaaggagaaagaagccattttctaaatgagatcaaaacactgagaaaa
gaactgaaagagcgagaggaagctgctatgactgaaatactgacaaaagctaatgttatt
ctggcaacaaacacaggagcctcttctgatggtccgctgaagctacttcctgagaaccac
tttgatctggtggtaattgatgaatgtgcgcaggcatttgaagcaagctgctggatacct
ctgctgaaggccaggaagtgtgtcctggctggagatcacaagcagctgcctcccacaatc
atctctcacaaagctgccacagagggtctttctctcagtttaatggaacggctgattcag
aaatatgatgaccatgttgtgaagatgctcactgtgcagtaccgaatgcaccagaccatc
atgcagtgggcttccactgagatgtacggcggccggctctcggctcactgctctgttgca
caacatttactgagggacctgccaggggttgcttccacagaagaaacttgcattccattg
ttgcttattgatacagctggctgtggcttatttgagcttgagctggaagatgaacagtct
aaaggaaatgaaggcgaagtgcgtcttgccagcttgcacgttcaggctttagtggaagct
ggtgttaaagcaagagacattgccgtcattgctccttacaacctccaggtggacatgcta
agggagcttttgtgtcacaagtacccagacctggagattaaatcggtggacggcttccaa
ggaagagagaaggaggctgttgtcctctcttttgtaaggtccaacagaaaaggtgaagta
ggattccttgctgaagaccggagactaaatgttgcaattactcgtgcccgccgccacgtg
gctgtgatctgtgactctcggaccattggcaaccacattttccttaaacggctggtggac
tatatgaaccagcatggggaggtgcgcaccgcttttgaatacctggatgacattgtgcca
gataactatgctgctcccaagagctctcagggtctgggtgaccaagaaaagagacttaag
tgcaaaactccacttgccctaaaggctgatggagagaagccaagtggaaaaccagccaaa
cggactgggcagagacctatagagggttctgtgcaaagcccagcctggggggcaacagtg
gacgctgtagtgaagggaaattcatgtaagcatgaagccaagatactggagtttctggaa
agtagcgagacccaactggatttcccttcgtcattaaatgctcatgacaggttgattgtc
catcgtctggcagaggaacatgggctgcagcatgtgagcacaggagaagggagagagaga
tacatcagtgtccgtaagagaggcaccgcgacagacttttctctgggagatgctaaggcc
agtgaacaagagtggtcctgcagacctgcaggaacccccaaagaatcccaggcctctgaa
caagagttaacctgcagacccccaagcccctcaaaagacacccatgtctactgtgaggag
agtggaagccgtattagcaggaagaaagtggatctgaaaaccctgcacatggagcggatg
caaagggagaatgccaagagagaggagagggccaaacaaatttgtgagccaaatgtaaac
cttcaggaaataactgggaataaacacagaagtgaagccaaagggaaggcttccgttaaa
accaaagtggaaggtgcagcagaggaagattttgatgctctgatttctgctgcaatcaaa
gctgacaacacgtgtggtttccccaaatgcaaagcaagtgtgacaaccctggggcagctc
tgcctgcattgcaataaatgctactgtctcagccaccacatcccagagattcatggctgt
ggggagaaagccaaagcatatgcccggcagagaatcagcaaagaagcgtctctatgtgcc
aggagtgggttaaaggacaagcccttggatcctgccaagagagctcatctccagaggcgc
ctggacaagaaactcagtgagctcacaagccaaagaaagagcaaaaagaaagacaaagag
aaatga
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