Zootoca vivipara (common lizard): 118089559
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Entry
118089559 CDS
T07275
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118089559 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118089559 (PATL1)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118089559 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
118089559 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
118089559
NCBI-ProteinID:
XP_034980257
LinkDB
All DBs
Position
LG1:78578053..78599870
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AA seq
765 aa
AA seq
DB search
MFRYQSLEDCPLDEDEEGFHNLTEEDEDIDQFNDDTFGAGAIDDDWQEAHERLAELEEKP
APGGDQVDSGVADEMDLLGDHEENLAERLSKMVIDNELEDPAIMQAVQTRPPVQQQGGLN
SSIWDGPSVLRRIRGPLLNQEVPSVSVLEYALPQRPPQAREEEQDLSERALPRRSSSPVI
GSPPVRAVPIGTPPKQPIMPNFNQQILCPKPVHIRVPIQQHYPSPFSERMSPNQLCNMTN
SSLLGHPFPPNVTPVLTHLQRAQLLGGAQAGRLSPSQFARVSGLVSNPLASMNPKLLQGR
VGQMMPPASGFRAYFGAPSAPSSQHHSPCPGAHLQNLRPQPQMFRPDTTHLHPQHRRLLH
QRQQQNRNQHRSLNGSAGDRGSHRNSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQSTD
PYLDDFYYQNYFQKLEKLSAAEEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKL
TVSSVNNPRKMIDAVVTLRGEEDETKEKQVRDKRRQTLFTIEKTYSLLLDVEDYERRYLL
SLEGDRLALMEERKQKICDMYDNLKGKMPNQERLCDDAFVQIMCIRKGKRLVARILPFLS
TEQAADILMATARNLPFLIKKDAQDEVLPCLLRPFSLVLYHLPMGTVASILQQLMNLPQS
TTTTASANPHLTNVLQNKFGLSLLYLVLSRGEELQSSDSTTDLLQDNQWTELMFMATREL
LRIPQAALAKPVSTPSNLLSLFSRYVDQQKLNVLETKLQLIQGIR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctaccagtcactcgaggactgccctctggatgaggatgaagaaggctttcat
aacttgactgaggaagatgaagatatcgaccagtttaatgatgacacatttggagctggt
gcaattgatgatgactggcaagaagctcatgaaaggttggcagagctggaagagaagcct
gcaccaggaggagatcaagtggattcgggagttgccgatgagatggacctgctgggggac
cacgaagagaacctagcagagaggctcagcaagatggtgattgataatgagttggaagat
ccagccatcatgcaggctgtgcaaactcggcctcctgtccagcaacaaggtgggctcaat
tcgagcatctgggatgggccttcagttctcaggcgcattagaggaccacttcttaatcag
gaggtcccctctgtgtcagtgctggaatatgccctacctcaaagacctccacaggcccga
gaagaggagcaggacctttcggagcgggcgctgcccaggcggtcatcctcaccagttatt
ggcagccctcctgttcgtgctgttcctattgggacgccaccaaagcagcccatcatgccc
aactttaaccagcagatcctgtgtccaaagcctgttcacattagagtccccattcagcag
cattacccaagccccttcagtgagagaatgtctccaaaccagctctgcaatatgacgaac
tcctccctcttgggccacccattccctcccaatgttactcctgttctcacccaccttcaa
agagcgcagctgctaggaggagcgcaggcagggaggctgtctcccagccagtttgcacgt
gtctctggacttgtcagcaacccccttgcttccatgaaccccaaactacttcagggccga
gttgggcagatgatgcctccagctagcggctttcgtgcctactttggggcgccgtctgcc
ccttcttcgcaacaccactccccatgtcctggagcccacctgcagaatttaaggcctcaa
ccgcagatgttccggccggatacgacccaccttcacccacagcaccgacgactcttgcac
cagaggcagcagcagaacaggaatcagcaccggagcctaaatgggtcagcaggggacaga
gggagccaccggaatagccaccaggagcagatcaggaaggacccttacgccaatctcatg
ctgcagcgggaaaaggactgggtgtccaagatccagatgatgcaactgcaaagcactgat
ccatacctggatgacttctactatcagaactattttcagaagctagaaaaattatctgca
gctgaggaaatgcatggggatggtcccaaaaaagagcgcaccaaactaatcaccccacaa
gttgccaagttagagcatgcctacaagccagtgcagtttgaaggctcactggggaagctc
acagtctccagtgtgaataacccccgcaagatgattgatgccgttgtgacgttacgaggg
gaagaagacgagacaaaggagaagcaggttcgagataaaaggcgccagactctcttcact
attgagaagacatacagcctcctcctggatgtagaagactatgagaggcgctaccttttg
agcctggagggcgacaggctggctttgatggaggagaggaagcagaagatctgtgacatg
tatgacaacctgaaggggaaaatgcccaaccaggaaagactgtgtgatgatgcttttgtg
cagatcatgtgtattcggaaaggaaaacgtctggttgcccggatcctacctttcttgtcc
actgagcaagccgctgatatacttatggccacagccaggaacttgccattcctaattaag
aaggatgctcaggatgaggtgctaccctgcctattgaggcccttctcccttgttctctat
catcttccaatgggaactgtcgccagcatcctgcagcagctaatgaacctacctcagagc
acgacgacgacagcatcagccaacccgcacctcacaaatgtgctccagaacaagtttggc
ctctctttgctgtacttggtcttgagccgtggggaggaactgcagagttcagattctact
acagatctcttgcaagacaaccagtggacggaactcatgttcatggcaaccagagagctt
ctccggattcctcaagcagccttggccaagccagtgtccaccccctctaatctcctgtct
ctcttctctcgctatgttgatcagcagaaactaaatgtgctagagacaaagttgcagtta
attcaaggaatacgatag
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