KEGG   Zootoca vivipara (common lizard): 118089881
Entry
118089881         CDS       T07275                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
zvi  Zootoca vivipara (common lizard)
Pathway
zvi03250  Viral life cycle - HIV-1
zvi04144  Endocytosis
zvi04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:zvi00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    118089881 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    118089881 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    118089881 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:zvi04131]
    118089881 (VPS4B)
   03400 DNA repair and recombination proteins [BR:zvi03400]
    118089881 (VPS4B)
Membrane trafficking [BR:zvi04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    118089881 (VPS4B)
DNA repair and recombination proteins [BR:zvi03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    118089881 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 AAA_22 AAA_5 RuvB_N IstB_IS21 AAA_25 AAA_18 DUF815 AAA_17 AAA_33 AAA_2 nSTAND3 RNA_helicase AAA_24 ResIII PhoH AAA_7 Mg_chelatase AAA_28 NACHT Parvo_NS1 bpMoxR Sigma54_activat DUF5906 Viral_helicase1
Other DBs
NCBI-GeneID: 118089881
NCBI-ProteinID: XP_034980866
LinkDB
Position
LG8:complement(12170846..12193622)
AA seq 440 aa
MAATSNLQKAIDLASKAAQEDKAGNFEEALRLYQHAVQYFLHVVKYEAQGDKAKQSIRAK
CTEYLDRAEKLKEYLKKKEKAPLKPVKESGPTDEKGNDSDGEGESDDPEKKKLQNQLQGA
IVMERPNVKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL
AKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR
SENESEAARRIKTEFLVQMQGVGTDNEGILVLGATNIPWVLDSAIRRRFEKRIYIPLPED
HARTAMFKLHLGTTQNTLTESDYRELGKRTDGYSGADISVIVRDALMQPVRKVQSATHFK
KVKGPSLSDPNILVDLFTPCSPGEPSAIEMTWMEVPGDKLLEPVVSMADMLRSLANTKPT
VNEHDLEKLKKFTEDFGQEG
NT seq 1323 nt   +upstreamnt  +downstreamnt
atggcggccacatccaacctgcagaaagcaatagaccttgctagcaaggcagcgcaagaa
gataaagcaggaaactttgaggaagccctccgcttgtatcaacatgctgtacagtatttt
cttcatgttgtcaaatatgaagcacagggtgacaaagcaaaacaaagcatcagagcaaag
tgtactgagtatctagacagagcagaaaagctgaaagagtatttgaaaaagaaggaaaaa
gctccgctcaaaccagtgaaagaatctggtcctactgacgaaaaagggaatgatagtgat
ggggaaggagaatctgatgatcctgagaaaaagaagttgcagaatcaactccaaggtgct
attgtcatggagcgaccaaatgtcaaatggaatgatgttgctgggctagaaggagcgaaa
gaagctcttaaagaagcagtaatattgcctattaaatttcctcatcttttcacagggaag
agaacaccgtggagaggcatccttctgtttgggcccccaggaacaggaaaatcatacttg
gcaaaagctgtcgcaacagaagctaacaattctacgttcttctccgtatcttcttctgac
cttgtctcaaaatggttgggggagagtgaaaagctagtgaagaatctgttccagcttgcc
agagaaaacaaaccttcaattatcttcattgatgaaatagattctctttgtggctccaga
agtgaaaatgagagcgaagctgccagacgaattaaaacagagttcttagttcagatgcaa
ggagttggaacagacaatgaaggaattttggttctgggagctactaacataccttgggtt
ctagattctgccatcagaagaaggtttgagaagcgcatttacattcccttacctgaggat
catgcaagaactgcaatgttcaagcttcaccttgggaccactcagaacaccttgactgaa
tcagattatcgagagctggggaagcgaaccgatggctactcaggtgccgacataagcgta
atagtacgagatgccctaatgcagcctgttaggaaagttcagtcggccacacactttaaa
aaagtgaaaggaccatcactgtctgatccaaacattctagtagatctcttcactccatgt
tctccgggagaaccaagtgccattgaaatgacgtggatggaggtgccaggggataaacta
ctggagcctgttgtttcaatggcggatatgctgaggtcattagccaacacaaagcccact
gtgaatgaacatgacctggaaaaactaaagaagttcacagaagattttggacaggaaggc
taa

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