Zootoca vivipara (common lizard): 118091161
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Entry
118091161 CDS
T07275
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zvi03016
]
118091161 (RTCB)
Enzymes [BR:
zvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118091161 (RTCB)
Transfer RNA biogenesis [BR:
zvi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118091161 (RTCB)
Prokaryotic type
tRNA splicing ligases
118091161 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
118091161
NCBI-ProteinID:
XP_034983720
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All DBs
Position
LG9:45913335..45923173
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKHCWRIKKGFVPNMNVEGVFYVNDPLEKLMFEELRNSCRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGTTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaacgatgagctgcagtacctggacaagctggacaagcactgctgg
cgtatcaagaagggcttcgtgcccaacatgaacgtggaaggtgttttctacgtgaacgat
cctttagagaagttaatgttcgaagagttaagaaattcatgcagaggtggaggagctggt
ggcttcctcccagccatgaaacaaatcggaaatgtagctgcactgcctggcattgttcat
agatctataggacttccggatgtccactcaggctatgggtttgccattggtaacatggct
gcctttgatatgaatgacccagaagcagtggtatcaccaggtggtgtcggattcgacatt
aactgtggtgtacggctcttgcgcaccaatcttgatgagagtgatgtccaacctgtgaag
gagcagcttgctcaatccatgtttgaccacattcctgttggtgtgggatccaagggtgtc
attcctatgaacgccaaggatttagaggaggctctggagatgggggtcgattggtccctc
cgagaaggctatgcctgggctgaggataaagagcactgtgaagaatatgggaggatgctg
caagctgatccaaataaagtctctgcgagggctaagaaaaggggtttgccccagctgggg
actttgggagcaggaaaccattatgctgagatccaggtggtagatgaaatttttaatgaa
tatgctgccaagaagatgggcatagaccacaagggccaagtttgtgtgatgatccacagt
ggcagcagaggccttggccaccaagtagctacagatgccctagtggctatggaaaaagct
atgaaacgagacaagatcatagtgaacgaccgccagctggcatgtgccaggattgcttca
gaggagggacaggactacttgaagggaatggcagcagctggaaactatgcatgggtcaat
cgttcttccatgactttcctcacccgacaggcttttgctaaagtcttcaataccacccct
gatgacctggatttgcatgtgatctatgatgtatctcacaacattgccaaagtagagcaa
catgtggtagatggaaaagaacggaccctgctggtgcaccggaaaggaacgaccagagct
ttccctcctcaccaccccctcattgcggttgattaccaactgactggccagcctgtcctg
attggtggaacaatgggaacttgtagctatgtccttactggtactgaacaaggcatgact
gaaacctttggtactacctgccatggagcggggcgtgcattgtcacgtgcaaaatctcgg
cgcaacttggatttccaggacgtattggacaagctggcggacatggggattgcaatccgg
gttgcatcccccaaactggttatggaagaagcacctgaatcttacaagaatgtgacagat
gtggttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagacccata
gcagtgatcaaaggctag
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