Zootoca vivipara (common lizard): 118091929
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Entry
118091929 CDS
T07275
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi04510
Focal adhesion
zvi04512
ECM-receptor interaction
zvi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118091929
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118091929
09142 Cell motility
04820 Cytoskeleton in muscle cells
118091929
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zvi04147
]
118091929
00536 Glycosaminoglycan binding proteins [BR:
zvi00536
]
118091929
Exosome [BR:
zvi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118091929
Glycosaminoglycan binding proteins [BR:
zvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118091929
Hyaluronan
Extracellular matrix or blood plasma proteins
118091929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
SRPRB
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
118091929
NCBI-ProteinID:
XP_034985425
LinkDB
All DBs
Position
LG10:45045690..45110035
Genome browser
AA seq
2259 aa
AA seq
DB search
MFFPGSFVHRLKMFLILLLVTLGAQTSTAQRPASESADIVLLIDSSDALGRRAFPSVKSF
VNRIINSLPIGPSRYRIALVQYSDDVKVEFHLDDYKAKNPMLNQLKKVSFKGGPLRTGNA
IRRVHETFFRRPRKDRNQIVVVTASAMSDDPVEEAASRLRQDGIKIIALGIQEALPQALQ
SIATPPFHYKFDTPRDLLAFSQNMSEVIGKAVQMEIFTVTATPAPPNVTESVTGTVGPVS
PEALTCRENSVADIVFVVDEAVSQANAEHIREFLQNTVNSLDVKEACIRMGIVTYSTEPK
VLTSLRDEMKKTDILQKIRSFSPKEGKSHLGAAINMTTKHVFAGRRRSVEQVATLITHRP
SDDDIRNAASLISRAGVTVFAISVEGADAAQLSKIVSHPPEQNIIKLRQFSDLPKQDETF
HKKLFNLIEDRLIIQPERTIQLKSGCVETERADIYFLLDDSSSIHIAGFINMTTFMKEAI
KMFTIGPDNVRFGVVQYSENTILPIRLGQHNTRISLEKEMNHIRHRALPETNTGAAINFT
RPLFKDARQQCRGNVPCYLIVLTDGKSSDDVKVAARLLRNANVNIYAIGVKDASEEELFH
IAGSKSRVYFVQQFEALEKIKNIVVRDICNEKACEERKVDVMFLVDSSGSIRPEDFAKMQ
TFMTEFVNKSNIGPEEMCVGAVQFSGTTEERFPLNRYLTKKDIIDAIGSMSLIRANTLTG
KALEFISDYFEPAKGARRGVHKVLILITDGEAQDEVKTPATALRDNGITIYSVGVFNANK
TQLEEISGRPERVFYVENFDVLNKVQDELRFGVCNPEEECKRLERLDIVFVIDSSGSIGP
ENYNLMKNFMIGIVNKSDVGKELVQFGALKYSDDPHILFDLDDHSTQSDVIDAIKSDTHL
GGDTYTAEALEHSKALFTEARGSRKHRGVSQILMVITDGESHDRERLDEVSKKLRDDKIT
IMAIGIKEANPAELLTIAGSEENKYFVDTFEGLQNISTNLSANLCNNSKPECEIQADLVF
LIDGSKSIPEKDFKRMKVFLKNLLDLIDYNDNVRVGMAQFADRYKEEFALGAYQNKPELQ
EKITNVTMMVGDRTYIGGALKGVKALFNSTRRRTPRHVMPKLLLITDGNSHDPVADSARA
LTADGVEIHAIGVGTVDRAKLMEITDDSDRIYSVANFKDLPNILTRVTKEVCKDENEATC
FMDVVIGFDISSQKAGDHIFNEQHLLETYLPDILKDFTSYGAVSCNKGTKTQFRVANLIE
NTDTPFLRTLQVDHEKILEDLRKVRLNGPSYLNVKFLDNLWNVFENVPGNHMRSQVLLVF
SDGLDADKEVLKKKSEELRGKGLDGIITVALEGVTNFPDLLDIEFGKGFGYNQQLSMGTQ
NIAGRLFAFVTQIAERTCCCQFCTCMQEEGPRGPKGKIGSQGSPGLPGHRGYIGEDGEPG
SRGFPGLEGPQGYRGDPGSQGMKGLQGRTGRKGEKGDDGLDGILGEEGSLGLPGHKGEKG
DAGLQGSPGPSGLPGDEGQKGFQGDPGDSGVDDDVEGAKGYKGSQGSRGEKGSQGFTGEN
GSPGYSGPEGQRGLPGPPGTKGNPGPRGLEGKQGFEGQQGTSGIPGEKGEKGHSGNKGLP
GNLGIPGPKGNQGKPGPRGNEGEPGDPGRKGPAGPRGPQGTRGDEGIPGYGAAGKKGSKG
EEGFPGDIGMQGARGNPGLPGEPGPKGVRGRMGTPGLKGEPGGPGAWGPPGRPGPKGEKG
LSSFSSCELIEYLREHSPCWTGRLECPVYPTDVVFALDVSQDTTPQIFEQMREMVIAVVN
NTQIRESNCPVGARVAVVSYSSDTHYLIRFQDFHNKEHLLQELAKLSYQRSTIRRDTGAS
MRFVARNVFKRTLPGANVRKVAVFFSNGQSDNGDSLSTAVLEFRAFDIHPAVIAFKNIPS
INRAFAIDDTRLFQVINIQPERDYTPALQKLQSCVLCYDKCKPDSSCFRAETPRPRGYVD
AAFILENSREISPVEFRKLKDFLSAALDGFDISAEPETSLTGDRVAVLSHAPPQFRPKTQ
RSPVEIEFDFLTYGSKIRMKRHIQESIQQLNGAAAVGHAIQWTISNIFSEAPNQRKYKAI
FVVSAGETSRWDKEVLRDASLRAKCLGYALFVLSLGDEYDGVEIEELASLPLEHHVVQLG
RIHKAELGYAVKFLKPFLRLLKSEMNKYPQAQLKRKCTSISQQRPLYGPPKRIFAVGNTM
PSGAMLLDAESAFREPTPYDFVTPGNPFSSGQQIIVPGN
NT seq
6780 nt
NT seq
+upstream
nt +downstream
nt
atgtttttccctggctcatttgtgcacagattgaagatgtttctaattttgcttctggtt
actcttggagcacagacttctacagcacagagacctgcctctgaatcggcagatattgtc
cttttgatcgacagctctgatgcccttgggagaagggcttttccatctgtcaaatccttc
gttaacagaatcatcaacagtctcccaattggcccaagcaggtatcgaattgcgcttgtg
cagtacagcgatgacgtgaaggttgaattccacctggatgactataaagccaagaaccct
atgctgaaccaactcaaaaaggtttcgttcaaaggtggacctttgaggaccgggaatgcc
atacgaagggtccacgagacctttttcagaagaccgaggaaagacaggaaccagattgtg
gtggtcacggcttcagcgatgtcagatgatcccgtggaagaagcagcaagccgattgagg
caggatgggataaaaataatagcgttaggaatccaggaggcgttgcctcaagcgctgcag
tcaatcgctacccctccgttccactataaatttgatacaccaagggatctcctagcgttt
tctcaaaacatgtctgaagttattggaaaggctgtacaaatggagattttcacggtcaca
gcaacgcctgcacctccaaatgtgacagaaagtgtaacaggaaccgttggtcctgtatct
ccagaagctctgacgtgccgtgagaactcagtcgcagacattgtatttgttgtggatgag
gctgtttcacaggcgaatgctgaacatatcagagaattcttgcagaacacagtaaactct
ctcgacgtgaaggaagcgtgcataaggatgggcattgtcacgtacagcacggagcccaaa
gtattaacttctctgagagacgaaatgaagaaaacggacattcttcagaaaattaggagc
ttttcccctaaagaagggaaatctcatttgggtgctgccattaatatgaccacaaaacat
gtttttgccggaaggaggaggagtgtagagcaggtcgccacccttatcacccacaggccc
tcggatgatgatataagaaatgcagcttctctcattagcagggctggtgtgaccgtcttt
gccatcagcgttgaaggagcggatgccgctcagttatctaagattgtgtcacatccgcca
gaacagaatattatcaaactgagacaattttccgacctgcccaaacaggacgagactttt
cacaagaaactcttcaacctaatagaagacagacttattatccaacctgaaaggacaatt
cagctcaaatcaggatgtgtggagacagaaagggctgatatttatttcctccttgatgat
tcttcaagcattcatatcgctgggttcattaatatgacaacttttatgaaggaagctatt
aagatgtttaccataggacctgataatgttcgatttggagttgttcagtattcagaaaat
actatcttaccaattagacttggtcagcacaacacccgcatcagtttagaaaaagaaatg
aatcatatcagacatagagcactaccagaaacaaacacaggagcagctataaatttcaca
cggccattgtttaaggacgcaagacaacagtgtcgcggcaacgtcccctgctatctcatt
gtgctgacggatggaaaatcaagtgatgacgtgaaggtagctgctcggctgctgaggaat
gcaaatgtcaacatttacgccattggagtgaaagatgccagcgaagaagagttgtttcat
attgcgggctcaaagtcaagggtttactttgtgcaacagttcgaggccttggaaaaaata
aaaaacattgttgttcgggacatatgcaatgaaaaagcctgcgaggagaggaaggttgat
gtcatgttcctagtggacagctctggtagcataagacctgaggactttgcaaaaatgcag
accttcatgacagaatttgtgaacaaatctaacattggcccagaagaaatgtgcgttggt
gctgtgcagttcagtggcacaaccgaagaaaggttccccctcaataggtacttgacaaag
aaggatatcattgatgctattggtagtatgtcccttatcagagccaacacgctcactgga
aaagcgctggaatttatttccgattattttgagcctgccaaaggggcacggcgtggcgtc
cacaaagttcttatcctgatcaccgatggggaagcacaagatgaagtgaaaactccagcc
acagccctgagagataatggcatcacgatctactcagttggcgtttttaatgccaataaa
actcagctcgaagagatcagtgggagacctgagagggtgttttacgtggagaactttgat
gttttgaataaggtacaagatgagctcaggtttggtgtgtgcaatcctgaagaggagtgc
aaaaggctagagcgtttggatatagtatttgtaattgatagttctggcagcattggtcct
gaaaactataatctcatgaagaacttcatgattggcattgtgaataaatctgacgtgggc
aaggagcttgttcagttcggagcactcaaatattcagatgatccacacattctgtttgat
ctcgatgaccacagtacacaatcagacgtcatcgatgctatcaagagtgacacacatttg
gggggcgatacatacacagcggaggctcttgaacattcaaaagctcttttcaccgaggca
cgtggcagtcgcaaacacaggggtgtttcccaaattctcatggtcataaccgatggtgaa
tcccacgatagagaaagacttgatgaagtgtctaaaaaactcagggatgataaaattact
atcatggccattgggataaaagaggccaatcctgctgaacttctgactatagctggatca
gaagaaaacaagtattttgtggacacattcgaaggactgcaaaacatatccacgaattta
tcagctaatctatgcaacaattcaaaaccagaatgtgaaatccaagctgatcttgttttc
ctgattgatggttccaaaagtatacccgaaaaagacttcaagaggatgaaggtcttcctg
aaaaacctgcttgatttaatagattataatgacaatgtgagagttggtatggcccaattt
gctgaccgatataaagaagaatttgctctgggtgcttatcagaacaaaccagaacttcaa
gaaaaaattactaatgttacaatgatggtaggtgatagaacatacattggaggggctctc
aaaggagtgaaggccttattcaactccacaagacgcagaacaccgagacacgtcatgccc
aagttgctgctaatcacagatggaaactcacatgaccctgttgctgacagtgcaagagcc
ctgactgccgatggtgtcgagattcacgctattggagtgggaacggttgaccgggcaaaa
ctaatggagatcactgatgactcagacaggatatactctgtggcgaatttcaaagatctg
ccaaatatcctaactcgcgtaactaaggaagtgtgcaaagatgaaaatgaagcaacatgt
tttatggatgtcgttattggattcgatatctcatctcagaaagccggagaccatattttc
aatgagcagcaccttctggagacttacctccctgatattttaaaagactttacatcttat
ggggctgtgagttgtaacaaaggaacaaaaacacagttccgtgtggcaaatctgatagaa
aatacagacacacctttcctgcggactctccaagttgaccatgaaaaaatcctagaggat
ctccggaaagtcaggctgaatggcccgtcatatctcaatgtcaaattcctagacaacctt
tggaatgtatttgaaaatgtacctggtaatcacatgcgaagccaggtgttgcttgttttc
tccgatggcttggatgctgacaaagaagtacttaaaaagaaatcagaagaacttcgggga
aaaggactggatggaataataacagttgctctggaaggagttaccaactttcctgatctt
ctggatattgaattcggaaagggatttggatacaaccagcaattaagtatgggtacacaa
aatattgccggcaggctgtttgcctttgtgacacaaattgctgagagaacatgctgctgc
caattctgtacgtgtatgcaagaggaagggccccgtggaccaaaagggaaaattggatca
cagggatctcctggtttgcccggccatcggggatatataggagaggatggagagccaggt
tccagaggattccctgggctggagggaccccaaggctataggggagacccaggcagtcaa
ggaatgaaggggctacaaggccgaactggaagaaagggagagaaaggagatgatgggctt
gatggaattctaggagaagagggatcacttggactcccaggacacaaaggagaaaagggg
gatgcaggcctgcagggcagcccaggaccaagtggacttcctggtgatgaaggtcagaaa
ggcttccagggagatcctggagattctggagtggatgatgatgtagaaggagcgaaaggt
tacaaaggttcacaagggagcaggggagaaaaaggatcacaaggttttacaggcgagaat
ggatctccaggatacagtggaccagagggacaaagaggacttccaggtccaccggggaca
aaaggaaaccctggtcccagaggtttggaaggaaaacaaggctttgaaggtcaacaaggg
acaagtggcattcctggtgagaaaggagagaaaggacattcaggaaacaaaggtcttccg
ggaaacttgggaatcccaggccctaaaggaaatcaagggaaacctggaccaagaggaaat
gaaggagaacctggggatcctggaaggaaaggaccagcagggccccgtggtccacaagga
acgaggggggatgagggaattcctggatatggagcagcaggaaagaaaggatcaaaggga
gaagaaggcttcccaggagacattggaatgcagggtgcacgtggaaacccaggccttcct
ggggaaccaggaccaaaaggcgttaggggaagaatgggtactccaggattaaaaggtgag
ccgggtggcccaggagcgtggggtcctccaggacgtccgggtccaaaaggcgagaagggt
ctgtcctcattttcgtcctgtgaactcattgagtatctgcgtgaacacagcccttgttgg
acgggaagactggagtgtccggtatatccgacagacgtagtatttgccttggatgtatct
caagatactacgccccagatatttgagcagatgagagagatggtcatagcagttgtgaac
aatacccaaataagggaaagcaactgcccagtgggagccagagtcgccgttgtatcctac
agctctgatacccactatctgatccgcttccaggacttccacaacaaggaacatttgctg
caggagctagctaagctttcttaccagaggtcaacgatcagacgtgacactggggcatcc
atgagatttgttgccaggaatgttttcaagagaactctcccaggtgctaacgtgagaaaa
gttgctgtcttcttcagcaacggccaatctgacaatggagattctctcagcacagcagtc
ctggagttccgtgcatttgacatccacccagcggtgattgcttttaaaaacatcccaagc
atcaatcgtgcttttgcgatagatgacacaagactgtttcaagttatcaatattcaacct
gagagagattatactccagccttacaaaaacttcagtcgtgtgtactttgctatgacaaa
tgcaagccagatagctcttgcttccgtgctgaaaccccccgtcctcggggctatgtggat
gccgctttcattttggaaaattcaagggaaataagcccggttgaattccggaaactgaaa
gatttcctaagcgcagcgctcgacggctttgacatctctgccgaaccagagacctctctg
acaggggacagggtggctgtgctgagtcatgctcctccacaattcaggcccaaaacccag
aggagcccagtagagatcgagtttgactttttgacttatggcagtaaaatacgaatgaag
agacacatccaagagtctatccagcagctaaatggagcggctgctgttggccatgccata
cagtggaccattagcaacatcttttctgaagcacccaaccagagaaaatacaaggcaatc
tttgttgtttctgctggagaaacaagtcgatgggacaaggaagtgctgagggatgcatct
ctgagagccaagtgcctgggctatgcactctttgtgctttccttaggggatgaatatgat
ggagtggaaattgaagaactagcaagcctgcccctggaacatcacgtggtgcagcttggg
cgaattcacaaggctgaacttgggtatgcagtgaagtttctgaagccatttctacgcctc
cttaagagtgaaatgaacaagtatccgcaagcacagctcaagagaaaatgtacaagcatt
agccaacagaggcccctgtatggtccacccaagcgcatttttgccgttggcaacactatg
ccaagtggagctatgcttctagatgccgaatctgcttttcgggagcccacaccatatgat
ttcgtaacccctggaaatcccttcagcagtggacagcagatcattgtacctggaaattag
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integrated database retrieval system
