Zootoca vivipara (common lizard): 118092438
Help
Entry
118092438 CDS
T07275
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
118092438 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zvi04121
]
118092438 (SLX4)
03400 DNA repair and recombination proteins [BR:
zvi03400
]
118092438 (SLX4)
Ubiquitin system [BR:
zvi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
118092438 (SLX4)
DNA repair and recombination proteins [BR:
zvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
118092438 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
118092438
NCBI-ProteinID:
XP_034986341
LinkDB
All DBs
Position
LG11:complement(269277..280400)
Genome browser
AA seq
1443 aa
AA seq
DB search
MGDSEDEFRESRRGRLKAGGPQGGRRLRRRPPPPAPARGDEAEAPGKTQDGGEGGGGAPS
GASGLPPASLLGAPPGAGDAAAEEGGSGGGGRGSRHCQEQAQGSAQVTLEPLALPGASAR
KEEEEKDHARRPPACEEEEEALRGDQSWGCQGAVPEELQPGSLEEAGWVFCQICQKDLSA
MNSVRREQHVNRCLDDLEGPLPAPPAARGPVVPECPICGKGFSSLRSRGGHLKRCAARME
VPPTLLLQAVRQQQQETLLLGLPAAQSGSKRKGASSTQRLPKKRKVAAEVDGATEDLLVA
MAMSRSLLEEEEGKAKQLAGSRQDGALKSRKPRKAEKKSRAKLGLPLPPLPLLLPQDPQE
TRRRIEARVAQLLSEAEEEEFPSTPLLPPSRLMDAELPQGAGGSLWEASSLARLCPPGSF
RATDFARSVSLQMPKEGAVLGVALPSSGPARAPEREQGLAGAVLLQGSAPGDSRERLPCR
PGDAEALEDLVELAGEGLTLTQWQMEGPGQGWLPGDAQQSSFLQPLEKQLPQRICPQTLP
LGSLADAFRGMVNNPHLSDIQFQVDTGEVLYAHLFVLYARCPQLMEMVGCEGFLVAEEGG
AGTRRVLLSDVSKEALGVFLSYLYTADVSVPRHVLSEVAALARRFGATELAGVCRGCQPG
PGVPGAEDESGEDRAGTFEELLKSMWLEEEEEALLQGGQLEEADSEEVGEQELEQIYEFA
ATQRKAAHDRLVFRKGAANPRKEPAESRAAMAEWTGSLCPEQSQLPGAAADAAARGTGPP
LRAATGSVPQMEEEENSEQHEHSAVLFPATQGDCSGLSQQSHCAKEQKGNAASQGPASQG
FPSLLWGPPRDLLPLGSSSPKQSAASPTSPLAVLSLVLPGLSPLGLSSPPPHGELERPAR
NKSPGGCGTLESSPIVLLDSDEEAERAEAGVLLAGAALSGPCTGALQSSQGGAGVSSGQR
PSLSPAQVGPGELWDAGGGSPLLLRLASNGEDSWEEASSWRVPDTPLLGGYTLAPGTEEQ
GSKGAGESLPTHSSTPRLPLLGPPSAQEKPSSSPVVIVGDSEEELDSAAPLPQSGTLVPG
EDSLCPSEGEGDSLLCLTPNAPAPLGTPPPAVGVKSPPARSPMAGGAAAPHLGERGASTE
DSDSSEVFPLTQRTPDLAFEAWSETPSAAPPTPMPSYSIMETPKLKKELRRFGVRALPKR
KMILKLKEIFQYTHQGARANPQEKTAVASQRTLPHSPAQPVPRKPRLAVASSPVGKWLPG
SAEPRQGARGSQTVCGFRDEGLGQVSEPHTSGRLQGTASLPTGFPPGGSTKDSAPTASQE
STASSGTGSDVSVVSQSSSSMEFGSLVEEEEEEHVPASQAAVREAHKLEALRRHLVSKPA
LCRQILLYQPIELAGLQAELKESGIRIAMGKLMDFLDAHCITFTTAEARREKQRHSKKRR
RRF
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactccgaggacgagttccgggagtcccgccgcgggcgcctcaaagccgggggt
ccgcaggggggtcgccgcctccgccgccggccacctccccctgctcctgcccgcggggac
gaggcggaggcccccgggaagacccaggatggcggagaaggaggcggaggggccccttca
ggggcgtctggactcccccccgcatcgcttcttggagcccctccaggagcgggagacgca
gcagcagaggaaggaggaagcggcggaggaggaaggggcagccgccactgccaagagcag
gcgcagggatccgcgcaggtgacgctggagcccctggcactcccaggtgcctcagccagg
aaggaggaggaggagaaggaccatgccaggaggccacccgcttgtgaggaggaggaggag
gcattgaggggtgaccagtcctgggggtgccagggggctgttccggaggagctgcagcca
ggaagcctggaggaggcaggctgggtgttctgccagatctgccagaaggacctctctgcc
atgaactccgtccggagggagcagcatgtcaacaggtgcctggatgacctagagggcccc
cttcctgccccccctgctgccaggggccctgttgttcccgagtgccccatctgcggaaag
ggcttcagctccctcaggagccggggcggccacttgaagcgctgcgcagccaggatggag
gtcccccccacgctgctccttcaggcggtgcggcagcagcaacaggagaccttgctcctt
ggcctcccagctgcccagagcgggtccaagcgaaaaggcgcctcttccacgcaacgcttg
ccgaagaagcgcaaggtggcggccgaggtggacggagcgacggaggacctgctggttgcc
atggcgatgtcccgctctctcttggaggaggaggaggggaaggccaaacagctggctggg
agcaggcaggatggcgctttgaaaagcaggaagccccgaaaagcagagaagaagagccga
gcgaagctgggcctcccgctgcctcctctgcctctgctgctgccccaggacccccaggag
acccgccggcggattgaggctcgtgtggcgcagctgctctccgaagcggaggaggaggag
ttccccagcacccccctgctcccccccagccgcctcatggatgctgagctgccccaggga
gcaggcggatctctgtgggaagccagctcactggccagactttgtcctccggggagcttt
cgggccacggactttgcccgctctgtctcgttgcagatgcccaaggagggagctgtgctg
ggcgtggctttgccatcctcggggcccgccagagcgccagagagggagcaagggctggct
ggtgctgtgcttctccaaggaagtgcccctggagattcacgggagaggctgccttgccga
ccgggcgatgcagaggccctggaggacctggtggagctggcgggagaagggctgaccctc
acccagtggcagatggaggggccaggtcaaggttggcttcctggggacgctcagcagagc
agttttctccaaccactggagaagcagctgccccaaaggatctgtcctcaaacgctcccg
cttggctccttggctgatgccttcagggggatggtgaacaacccccacctgagcgacatc
cagtttcaggtggacactggggaggtcctctatgcgcacctgtttgtgctttatgcccgg
tgcccccagctgatggaaatggtgggctgcgaaggtttcctcgtggctgaagaagggggc
gcagggacccgccgggtgctgctgagcgatgtgtcgaaggaggccctgggcgtcttcctg
agctacctttacacggctgacgtctccgtccctcgccatgtgctgtcagaagtggctgct
ttggccaggaggttcggagcgacggagctggctggcgtgtgccgcggctgccagcctggc
ccgggggttcctggagccgaagatgagtcaggagaggacagggccgggacctttgaggag
ctcctgaaatccatgtggctggaggaagaggaagaagccttgctgcagggcgggcagctg
gaggaagccgacagcgaggaagtgggcgagcaggaactggagcagatctacgagtttgct
gccacccagcgcaaagctgcccacgataggcttgtcttccgcaagggagccgccaacccc
aggaaggagcctgcagagagcagggcagccatggcagagtggacaggaagcctctgcccg
gaacagtcccagttgccaggtgctgctgctgatgccgccgccaggggcacagggcccccc
ctcagagctgccaccggaagcgttccccagatggaggaggaggagaattcagaacagcac
gagcattcggctgtcctgtttcctgccacccagggtgactgctctgggctctctcagcag
agccattgcgccaaggagcagaagggcaatgcagccagccaaggccctgcatctcaggga
tttcccagcctcctctgggggccaccgagggacctcttgcccctgggatcctcctctccc
aaacagagcgcagcatcgcccaccagccccttggcagtcctctctcttgttctgccaggg
ctgagccccctgggcttgtcatctccccctccgcacggcgagttagagcggcctgcgcgg
aacaagagcccaggtggctgtgggaccttggagagcagccccattgtgcttttggattct
gatgaagaggcagagcgggcagaggccggcgtcttgcttgctggagcggccctctctggg
ccatgcacaggggccttgcagtcgagccaagggggggcaggtgtttccagtgggcagagg
ccatccctgtcccccgcccaggtgggccctggggagctttgggatgctggtggaggaagt
cctctgcttctgaggctggccagcaatggagaggacagctgggaggaggcctccagttgg
agggtgccagacactccactgctgggcgggtacaccttggcgcctgggaccgaggagcag
ggctctaaaggggctggagagagcctgcccacccacagctccactcccaggctgcctctg
ctgggacccccgtctgcccaggagaagccttccagcagccccgtggtgatcgtgggcgac
agcgaagaggagctcgattcagcagctcctttgccccagagtggcacccttgtgcctggg
gaggactccctgtgtccctcggagggggaaggtgacagccttctttgtctgacaccaaat
gccccagccccactggggactccgccaccagccgtgggtgtgaaaagccccccagctagg
agtcccatggctgggggagcagctgccccccacttaggagagagaggtgcctcgacagaa
gactctgatagcagcgaggtctttcctttgacccagagaacgcctgatcttgcctttgag
gcctggagtgagacgccgagcgcagctccacccaccccgatgccatcttactccatcatg
gagaccccgaagctgaagaaggagctgcgcaggtttggagtccgtgctctccccaagcgg
aagatgatcttgaagctgaaggaaatatttcagtacactcaccaaggggccagagccaac
ccccaggaaaagacggctgtggcctcccagcggaccttgccccacagcccagcccagcca
gtcccgaggaagccaaggctggccgtcgcctccagccccgttggcaagtggctgccagga
tctgctgagcctcgccagggcgctcggggcagccagacggtctgcggcttcagggatgag
gggcttgggcaggtgtccgagcctcacacttcagggcggctgcaggggacagcctcactc
ccaacaggatttccccctggaggaagcaccaaggactcggcacccacagcttcccaggaa
tcaactgcgtcttcagggactggcagtgatgtgtctgtcgtgtcccagagctcttcttca
atggaatttggctcgctggttgaggaggaagaggaggagcacgtcccggcttctcaggct
gcagtccgtgaggcacacaaactagaggccttgcggcgccacctcgtctcaaagccagct
ctttgccgccaaatcctcctgtaccagcccattgagttggctgggctgcaggcagaactg
aaggaaagcggcatcaggattgcgatgggcaagctgatggacttcctcgatgcgcactgc
atcaccttcactactgcagaagcccggagggagaagcaacggcactccaaaaagaggagg
cggcggttctga
DBGET
integrated database retrieval system
