Zootoca vivipara (common lizard): 118093001
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Entry
118093001 CDS
T07275
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118093001 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zvi03041
]
118093001 (PRPF40A)
Spliceosome [BR:
zvi03041
]
Complex A
U1 snRNP components
U1 related factors
118093001 (PRPF40A)
Complex B
118093001 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
118093001
NCBI-ProteinID:
XP_034987599
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Position
LG1:complement(100954383..100992717)
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AA seq
994 aa
AA seq
DB search
MQLNPGEGVRPVGAPGPEQSPKSTRMGGRPDWPAGKPVSLLAPLLPPRGEPEPLLPFGPS
SRQPLRGRLLGRCGGGGGGGSLLNPSMRPGGGGGGGGGGGGGMGREPLMMGHPGMPHYPP
MGMHPMGQRPPNMPPVSHGMMPQMMPPMGGPQMGQMPGMMQSVMPGMMAPHMSHAPMQPT
GPPGVNSMDSQIGLAPPGTQPTPPVVCSVQQVTPANSSANEEPSKQKSMWSEHKSPDGRT
YYYNTETKQSTWEKPDDLKTPAEQMLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELE
DLEAMIKAEENSGKPEESVPASSAVAPGVTNAAATVPEAPIAAPAVPAAPAVASAPETEP
STVATVIENERVTATADEQVQPAAPAVQEPTAEVVTNSVEEAPKQESSDVAAKKDEEDAQ
PVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLNEKKQAFN
VYKVQTEKEEKEEARLKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISER
DRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEAQQYLMDNPT
FAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKGLLRERRRQRKNRESFQIFLDELH
EHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDI
LKDKGFVVEVNTTFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARK
MKRKESAFKSMLKQATPPIEMDAVWEDIRERFVKEPAFEDITLESERKRIFKDFIYLLEH
ECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQRSDSRSVSERSSSAES
ERSYKKSKKHKKKNKKRRHKSDSPESDVDREKDKKERENEKERSRQRSESKHKSPPKKRP
GKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaaccccggcgagggagtgcggcccgtgggggcccccggcccggagcagtcg
cccaagagcacccgcatgggaggccgcccggattggccggccggaaagcccgtcagcctt
ttggctcccctcctcccgcctcgaggggagcccgaacccctcctgcccttcggtccgtct
tcccgccagccgctccgggggaggctgctgggcaggtgcggaggtggtggtggcggcggg
agcctcctcaacccttcgatgcgaccaggtggcggcggaggaggaggaggcggcggcggt
ggcggtatgggccgagagcccctaatgatgggacatccggggatgcctcactatccaccc
atgggaatgcatcctatgggccaaaggccacccaatatgcctccagtctctcatggaatg
atgcctcaaatgatgcctcctatgggagggccacaaatgggacagatgcctggaatgatg
caatcagtgatgcctgggatgatggcaccccatatgtctcatgctcccatgcaacctaca
ggaccgccaggagtaaacagtatggattctcaaattggtttagctcccccaggaactcag
cctacacctccagtagtttgttcagtgcagcaagtcaccccagccaacagctctgctaat
gaagagccttccaaacagaaatctatgtggtcagagcataagtcaccagatggaagaaca
tactactataatactgaaacaaagcagtctacctgggagaaaccagatgatctcaaaaca
cctgcagagcaaatgttgtcaaaatgtccatggaaggaatataagtctgattctggaaag
ccttactactacaattcccaaacaaaagagtcacgctgggcaaaacctaaggaacttgaa
gatcttgaagcaatgattaaagctgaagaaaacagcggtaaaccagaggaatctgttcca
gcatcatctgcagtcgcaccaggggttacaaatgctgcagccactgttcctgaagctcct
atagctgccccagcagtccctgctgctccagctgttgcatcagctccggaaactgagcct
tccactgttgctactgttatagaaaatgaaagggtcactgctacagctgatgagcaggta
cagccagctgctcctgctgtacaggaaccgactgcagaagttgtgacaaactctgtagaa
gaagctcctaaacaggaatcctcagatgttgccgccaaaaaggacgaagaagatgcccag
ccagttaaaaagacctacacatggaatacaaaagaagaagctaagcaagcatttaaagaa
ctattgaaagaaaagcgtgtgccatccaacgcctcttgggagcaagcaatgaaaatgata
attaatgatccaagatacagtgctttggcaaaactaaatgagaagaagcaagcgtttaat
gtttacaaggtccagacagagaaagaagaaaaagaggaagccagattaaaatacaaagag
gcaaaagaatcttttcagcgtttccttgagaaccatgagaagatgacatccactaccaga
tacaaaaaagctgaacaaatgtttggagagatggaagtctggaatgcaatatcagaacgt
gatcgtcttgaaatctatgaagatgtcctattcttcttatcaaagaaagaaaaggaacag
gccaagcagttgaggaagaggaactgggaggcattaaaaaacatcctggataatatggct
aatgtcacatactgtactacctggtcagaggctcaacaatatctgatggacaatcctacc
tttgcagaagacgaggaacttcagaatatggataaggaggatgcattgatttgtttcgaa
gagcacataagggctttggaaaaggaggaggaggaagaaaagcagaagggattgctcagg
gaaagaagacggcaacgtaaaaacagagaatctttccagatatttctggatgagctgcat
gaacatggccagctgcattcaatgtcatcatggatggagttatatccaaccataagttct
gatattcgatttactaacatgcttggtcagcctggctcaacagcacttgatctcttcaag
ttttatgttgaagatctgaaagcacgttaccatgatgaaaaaaagataataaaagacatc
ctaaaggacaaaggatttgtagttgaagtgaatactacttttgaagactttgtcacagtc
atcagttcaaccaaaagagctaccactttagatgctggaaatatcaagctagctttcaat
agtctgttggaaaaggcagaggctcgtgaacgtgagagagagaaagaagaagcccgcaaa
atgaaacggaaagagtctgcttttaagagtatgctaaaacaagcaacccctccaattgaa
atggatgcagtgtgggaagatattcgggaaaggtttgtgaaagaaccagcatttgaagac
atcactctagaatcagaaagaaaaagaatatttaaagatttcatttatttactagagcat
gagtgtcaacaccatcattcaaagaacaagaagcattctaaaaaatcaaaaaaacatcac
agaaaaaggtctcgctctcgttcgggttcagaatctgaggatgatgacagtcattcaaag
aaaaagaggcaacgctcagactctcgatcagtctccgaacgctcctccagtgcggaatct
gagagaagctacaagaaatcaaagaaacacaaaaagaagaacaaaaagaggagacacaag
tctgattctccagaatcggatgtggatcgagaaaaagacaaaaaggagagagaaaatgaa
aaggaaagaagtaggcaaagatctgaatctaagcataaatcacctcctaaaaagcgacct
ggcaaagattctggtaattgggatacctctggtagtgaattaagtgaaggtgaactagaa
aaacaaaggaggaccctcttggaacaactggacgaagatcaataa
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