Zootoca vivipara (common lizard): 118093101
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Entry
118093101 CDS
T07275
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118093101 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118093101 (PARN)
Enzymes [BR:
zvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118093101 (PARN)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118093101 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
118093101
NCBI-ProteinID:
XP_034987782
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All DBs
Position
LG11:complement(9140428..9187521)
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AA seq
636 aa
AA seq
DB search
MEITRNNFKDNLSKVYEAIEDADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDLTESKYVIKSFNFYIFPKPFNRTSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDERRSQANGVGALSYVSPNASKCPVTIPEDQKKF
IEKVVERIEDLLQKEESTSLELEPCTGFQRKLIYQTLNWKFPKGIHVETQETEKKERYII
ISKVDEEERKRRERQKQVKEQEELKDAVGFSRVVHALANSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLDEFKELATCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRVKETPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKSHVSAKSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIHVSWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVEKKHEEKRQGKRKWTEDGWKELEGKRL
KTQATPYVLQNRYYNPNSFSATSAVGKRSMSPIQEESGCDDVEESEMQEEPPDSFGEPLE
EGKKKAKKFKKSKREHAPAEDLQAPPARLFDVPDTW
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggagataaccaggaacaattttaaggacaacctcagcaaagtttatgaagctattgaa
gatgcagactttttggctatcgatggagagttttcaggaattagtgatggaccatctgtt
agcgcgttaacgaatggcttcgacacacctgaagaaaggtatcaaaaacttaaaaagcat
tccatggatttcttgctgttccagtttggcctttgcacttttaaatacgatctcacagaa
tctaagtacgttataaaatcgtttaatttctacatcttccccaaacctttcaatagaacg
tcgccagatgtgaagtttgtctgtcagagttcaagtatagactttttagcaaaccaggga
tttgattttaataaagtttttcgcaatggaatcccttatttaaatcaagaggaggaaagg
cagctgcgggagcaatatgacgaaaggcgatcccaagccaatggagtgggggccttgtcg
tacgtgtcccccaatgcctcaaagtgccctgtgaccattccagaggaccagaagaagttc
attgagaaagtggtagaaaggatagaagaccttctgcagaaggaagagagcacaagtttg
gagctggaaccatgcacaggattccagaggaaactaatttatcagacgctgaactggaag
tttccgaaaggcatccatgtcgaaactcaggaaacggagaagaaggaaagatacattatc
attagcaaagtggatgaagaggagcgaaaaaggagggagcggcagaagcaagtgaaggag
caggaagaactcaaagacgcggtggggttttcccgagtcgttcacgctcttgcaaattct
ggcaagcttgtggttgggcacaacatgttgctggacgtcatgcataccatccaccagttc
tactgcccgctacctgaggatctcgatgagtttaaagaactggcgacatgtgtttttcca
aggttactggacactaagttgatggccagcactcagccgttcaaggaaatcattaacaac
acatcccttgcagagctggagaagcgtgtaaaggagactccgttcagccctccaaaagtc
gaaagcgcagaaggattcccgagttacgacacagcttcggagcagcttcacgaagcaggt
tatgacgcttacatcacaggcctgtgtttcatctccatggccaatttcctaggttccttt
ctcagccccccgaaaagtcacgtgtctgccaaatcaaagctcattgaaccttttttcaac
aaactgtttctgatgcgggtgatggacatcccatatctcaacttagaaggaccagacctg
cagccaaaacgtgaccacgttctatacgttacgtttcccaaagagtggaagacgagcgac
ctttaccagcttttcagtgcttttggcaacattcatgtttcctggattgatgatacgtca
gcctttgtgtcgcttagccagcccgaacaagtacagattgccgtaaacaccagcaagtat
gccgaaagctacagaatccagacctatgcagaatacgtggagaagaagcacgaggagaag
aggcagggcaagaggaaatggacagaagatggttggaaggagttggagggaaagaggctg
aaaacacaggccactccgtacgtgcttcaaaaccggtactacaacccaaacagtttttca
gctaccagcgccgtggggaagagaagcatgagccccattcaagaggagagtggctgtgac
gatgtggaagagagcgaaatgcaggaggagcccccagactcctttggggagcccttggaa
gaggggaagaaaaaagccaagaagttcaagaaatccaaaagggaacatgccccagcagaa
gatctccaggccccgcccgcccggcttttcgacgttccagacacgtggtag
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