Zootoca vivipara (common lizard): 118093468
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Entry
118093468 CDS
T07275
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zvi03009
]
118093468 (PDCD11)
Ribosome biogenesis [BR:
zvi03009
]
Eukaryotic type
90S particles
Other 90S particles
118093468 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
OB_RRP5
HAT_PRP39_C
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
TPR_19
ARM_TT21
ARM_TT21_5th
TPR_CcmH_CycH
TPR_15
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
118093468
NCBI-ProteinID:
XP_034988521
LinkDB
All DBs
Position
LG12:1201296..1231858
Genome browser
AA seq
1818 aa
AA seq
DB search
MSSVEENFPRGGPQRKSQEEKAARQSTVDQDTLFKTQHEEVTKKRKKNHQDEPKPKKLKI
EKKAVVKIGVKHFEFLTVESLTAGVLLLGCVKESNQFELVISLPNGLTGFVQVTRISDAY
NEMLNEQVATDEHLENLNSLSDLFTPGMLVRCAVVGVEKTTTGRQSIQLTINPKDVNKAL
NAATLRPGMLLSGCISSVEDHGYLIDIGIQATKAFLPRQKAKAYLQSANKGTELKIGQYF
NCLIEEVKNGGRIIRMAIDQSEVAAAIATEEQNWSLGNLLPGLVVKAQIQEVTPFGISLS
FLSSFSGLVDYMHMTSTKTRTYSPGQTVKACILFNNPTSKAIRLSLRPVFLQPGTQLGKL
SSDQIGRVVPDSTVETFLKKTGAIFKLDGGCLAFAHIKHLSDTAKSFKPAAFKPGSKHKC
RIIDYSPMDDVVLVSLKQHIIEAPFLRYHDIHPGQVVECTVLALKPFGMQVKVTQHIKGL
VPRLHLADVLLKQPEKKYSVGSTVRCRVLSCNPEARKLALTLKRTLVNSELPAISSYEDA
KPGLITHGFVACAKDFGCIVKFYNDIKGLVPKNELGGAPSIVPQETFYAGQVVKVIVLKC
EPEQERLLLSFKLTNEALAEDGGGKKTSKKREVTYETGQIVDVKILRKKEDGLEVTILPD
NVFAYLSTNHLSDYVSNSKLWWSCLKADDILHRVLCLHDKGGHVTLSRKPTVISAIEEER
VVKSFSDIQPGLILTGFVRNVMPYGVFVEFPYGLTGLAPKSAMSDKFVTDTKDHYVVGQT
VVAKVTSIDEEKQRILLSLKVSECSSEDSVSESFSLLHKYFKELQEIKSIRSGRDDVGVV
QKVCELKPGQRLMLTARKVNTDGSALFDSTSVSGLAIMATHSHLGGKNIVQGEKTRAVVL
YIDSLESKVHVSLREELLSPKPKKLKLNSQHQAIVQHVATEHAVVSLVGNGHLVAIPVAS
HFNDTFRFDSEKLKVGQSVLVVLKTLQPGDCGLLLAVQDQKKRKAVIRSRRESETLGETS
AIVNHSLCLGDVVKGTVKSVKPTHVLVAINDQLIGSIHASQILDNVSIGTFPTSVLRVGQ
QLTARVIGGKDIKNHRYLPITHPHFTRTCPELSIRPSELSGESKTALGPEDGNPEEILKP
FKPGQMVTCFVKKYAAANKWLEVEVTPNIRGRIQQLLLSLRPTILKHAGKHFRNGQALAA
TVTGSDVTETKLHLSLTGVYTLEKGTITLGYVSKVIPHVGLNVQLPFERKGKVSLFHLSD
SYAEQPLEMFSIGKIVRCYILSSEGNKMEVSLRQSRINPKGHCKVEDPEITSLDDLQNGQ
LVRGYVKSITPSGIFFGLSDSVVGQIPPQFISPLFISDHSLCAKYIHAGQFLTAKVFSIN
KEKKLAELSLLPEDTGKPSIIPESLELPVGEKDTPPRKRKRGNSESEQEVQARKKKTRCP
EDDDSGVEVYYREEEEREEKKCATESKEKKVPRLQVSASFTWEEGLSVLDTTMLKQREQS
SDSEEEEEDNVTESTTKKQTKKKKELEKQKAEKELSKLEAALMDPSRQPQTADDFDRLLL
GNPDSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGT
EEALMKVFERAIQYNEPLKVFQQLADIYSGSEKYKQADDLYNTMLKRFRQEKSVWVKYAT
FLLKRGSVEAAHRLLPRALKCLPVKEHLDMISKLAQLEFQFGDLEYGKTVFENTLSTYPK
RTDIWSVYIDMMIKHGSQKEVRDIFERVIHLSLAAKKMKFFFKRYLEYEKKYGTAETVQA
VKAAALEYVESKSSLAEG
NT seq
5457 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgtagaagagaatttccctcgaggtggcccacaaaggaaaagtcaagaagaa
aaagcggccagacagtcaacagtggaccaggatactttattcaaaacgcaacatgaagaa
gtgaccaagaaaagaaagaaaaaccatcaagatgaaccgaagccaaaaaaactcaagatt
gagaagaaagctgttgtaaaaatcggtgttaaacattttgaatttttaacagttgagtcc
ctcactgcaggggtactgctcttaggatgcgtgaaagagtctaatcagtttgagctggtg
atcagcttgcccaatgggctcactggatttgtgcaagtgacacgtataagtgatgcctac
aatgagatgctgaatgaacaggtggctacagatgagcacttagagaatctgaattctctc
tcagatctcttcaccccaggaatgctggtcagatgtgctgtggttggtgtggagaagact
actacaggtcgtcagagtatacagctaacaatcaaccccaaagatgtcaacaaggctttg
aatgctgccactctgagaccaggcatgctgctctctggctgcatctctagtgtggaagat
cacggctaccttattgacataggcatccaagcaacaaaagcatttctgcctcgtcagaaa
gccaaggcctacctgcagtcagccaacaaagggactgagctgaagataggccaatacttc
aactgccttattgaagaagtaaagaatggtgggaggataatccgcatggccattgatcag
tcagaggttgctgcagctattgccacagaagaacaaaactggtcccttggcaatttgcta
cctgggctggtggtgaaagcccagattcaggaggtgactccttttggaatttctctgagt
tttctgtcttccttctctggacttgtggactacatgcacatgacttctacaaaaacaaga
acctactcaccaggtcagacggtgaaagcatgcattctcttcaacaatcctacctccaag
gcaatacgcctatctctgcgcccagttttcctccagcctggcactcaacttggcaagctg
tctagtgatcagattggcagggtagttccagactccacagttgagacctttctcaaaaag
actggtgccatcttcaagctggatggtggctgcctagcttttgcacatataaaacatctt
tcagatactgccaaatctttcaaacctgcagcattcaagcctggaagcaagcataaatgc
cgaattattgactacagcccaatggatgatgtggtgctggtgtctctcaaacaacacatt
attgaggctccattcctgagataccatgatattcatcctggacaggtggtggaatgcacg
gtgttggctctgaagccctttggcatgcaagtaaaggtgactcagcacatcaagggcctg
gttccccgactgcatctggcagatgtgcttctgaaacagccagagaagaaatacagtgtg
gggagcactgtccggtgtcgggtgctttcctgcaatcctgaagcaaggaaactcgctctg
acgcttaagagaacacttgtcaattctgaactccctgccatttccagttatgaagatgca
aagccaggcttgatcacccatggttttgttgcatgtgctaaggactttggctgcattgtg
aaattctataacgacataaagggccttgttcccaaaaatgagctcggtggggcaccttca
attgttcctcaagaaacattttatgcaggccaggtggtcaaagtgattgtcttaaaatgt
gagcctgagcaggagagactgctgctgtcattcaagctgacaaatgaagcactagctgag
gatggtggaggaaaaaagacttcaaagaagcgagaagtaacatatgaaaccggacagatt
gttgatgtaaaaattctgaggaaaaaagaagatggccttgaagttacaatcttgccggac
aatgttttcgcctacctttccacaaatcatctctctgactatgtgtctaatagcaagttg
tggtggtcctgccttaaagcagatgatatactccatagagtgttatgcctccatgacaag
ggaggtcatgttaccctgagcagaaagccaacagtgatttcggcaattgaggaggaacgg
gtggtgaagagcttttcagacatccagcctggattgatcctgactggctttgtgagaaac
gtcatgccttatggtgtgtttgtggagtttccatatggtctgacaggactggcacccaag
tcggcgatgagtgacaagtttgtgacagacaccaaagaccattatgtggtaggtcagact
gttgttgccaaagtgaccagcattgacgaggagaagcaacgcatcctgctgtccctgaag
gtgtctgagtgctcctccgaggattctgtttctgagagcttctctttgctgcacaaatac
tttaaggagctgcaggagatcaagagtatcaggagtggaagagatgatgtcggtgtggtt
caaaaagtctgtgaattaaaacctgggcagaggctgatgctgacagctcgcaaagtcaac
actgatggttcagcactatttgatagcacctctgtttctggcttggctataatggctact
catagtcaccttggaggcaaaaacattgtccagggtgaaaaaacaagagctgtggttctc
tacattgattccctagaatcaaaggtccatgtgtcgcttagagaggagttgctgtccccc
aaacctaagaagttaaaactgaactctcagcaccaagccatcgtgcagcatgtggctaca
gagcatgcagttgtttcattggtaggaaatggtcatctggttgccatacctgtggcttcc
cacttcaatgacactttccgctttgattctgaaaaactgaaagtgggacagtcggtccta
gtggttctgaaaactctccagccaggcgactgtgggctcttacttgctgtgcaagatcag
aagaagagaaaggctgtaatcaggtcacggcgtgaatctgaaacacttggggaaacctcg
gccattgtgaatcactcactgtgcttgggagatgtggtcaaaggaactgtcaagtcagtc
aagcctacccatgtcctagtggcaattaatgatcagctgattggctccattcatgcatcc
cagatcctggataatgtttccataggcacctttccaacatcagtgctaagagttgggcag
cagctgactgctcgggtgattgggggcaaagacattaaaaatcacaggtatttgcccatc
acccatccccattttacccgtacctgcccagagctcagcatccgaccaagtgagctgtct
ggagaaagcaaaactgccctgggtccagaagatggcaatccagaagaaatactgaaaccc
tttaagcctgggcagatggtgacatgctttgttaagaagtacgctgctgcaaataaatgg
ctggaggtggaggtcacccctaacattagagggagaattcaacagctgctactttccctt
cgacccacaatcttaaaacacgcagggaaacacttcagaaatggacaagctttggctgcg
acggtgacaggctctgatgtcactgaaactaagctccatctgtcgcttacaggagtttac
actctggagaaaggaaccatcacactaggctatgtgagcaaggtgattccgcatgttggc
ctgaatgttcagcttccctttgaaaggaaggggaaagtcagccttttccacctgagtgat
tcatatgctgagcagccgctagaaatgttcagcattgggaaaattgtcaggtgctatatc
ctttccagtgaaggtaataaaatggaagtgtcccttcgacaatccaggataaatcccaag
ggccattgtaaagtggaagaccctgaaatcacatccctcgatgatcttcagaatggtcag
cttgtcagaggctatgtcaaatccatcactccatcgggcatcttctttgggttgtctgac
tcagtcgtgggtcaaatcccaccacaatttatctctcctctcttcatttcggatcattca
ttgtgtgcaaaatacatacatgccggccagttccttactgccaaggttttcagtataaat
aaagaaaagaaacttgcagagttgtctctccttcctgaagacactgggaagccaagcatt
atcccagagtccctggaactgccagttggtgaaaaggacacaccgccgagaaagcgaaaa
aggggaaactctgaaagtgagcaggaggttcaagcacgaaagaagaaaactcgttgccct
gaagatgatgatagtggtgttgaggtctactatcgggaagaagaggagagagaagagaag
aagtgtgcaacagaatctaaggaaaagaaagttccaaggctgcaggtttcagccagcttt
acatgggaggaaggcttaagtgtgctagatacgaccatgttgaaacagagggagcaaagc
tctgacagcgaagaagaagaagaagacaatgttacagagtccacgaccaagaagcagaca
aagaagaaaaaagagctcgagaagcagaaggcagagaaggaactctccaaacttgaagct
gccctgatggatcccagccggcaacctcagacagctgacgactttgaccgtttgctcctt
ggcaaccctgacagctccatcctctggttgcagtatatggcttttcacctccaggctacg
gagatagagaaagcaagagctgtggcagaaagggcactcaaaaccatctcctttagagag
gagcaagaaaagctgaatgtgtgggttgcactgctgaacctggagaatatgtatggcacc
gaggaagcactaatgaaagtcttcgaaagagccatccagtacaacgagcctctgaaggta
ttccagcagctggcagacatctacagtggctctgagaaatataagcaagctgatgatctg
tacaacacaatgctgaagcgatttcgtcaagaaaagtctgtgtgggtgaagtacgccact
tttctcctgaaaagaggctcggtggaggcagctcataggctcctcccacgtgcactgaag
tgcctgccagtcaaagaacatctggatatgatttcaaagctggcacagctggagttccag
tttggtgatctggaatatggcaagaccgtttttgagaataccctgagcacctacccgaag
cgtacggacatctggtcggtgtacatagacatgatgatcaaacatggcagccagaaggaa
gtacgggatatttttgaacgtgtaatacatctaagcctagcagcgaagaagatgaagttt
ttctttaagcgctatctggaatacgagaagaagtatggcacagcagaaacagtccaggct
gtgaaggcagcagcactggaatatgtggaatccaagagcagtcttgctgagggctaa
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integrated database retrieval system
