Zootoca vivipara (common lizard): 118093553
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Entry
118093553 CDS
T07275
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi04382
Cornified envelope formation
zvi04510
Focal adhesion
zvi04512
ECM-receptor interaction
zvi04518
Integrin signaling
zvi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118093553 (COL4A4)
04518 Integrin signaling
118093553 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118093553 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118093553 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118093553 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zvi04147
]
118093553 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
zvi00536
]
118093553 (COL4A4)
Exosome [BR:
zvi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118093553 (COL4A4)
Glycosaminoglycan binding proteins [BR:
zvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118093553 (COL4A4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118093553
NCBI-ProteinID:
XP_034988790
LinkDB
All DBs
Position
LG12:complement(21749779..21824331)
Genome browser
AA seq
1680 aa
AA seq
DB search
MCSLKRITFIFTAACWLIFVLSLQPVKGGQYAYISRCGGQDCTACQCFPEKGSRGQPGQM
GPQGPIGALGLIGPIGLPGVKGQRGDIGLPGPSGQRGSKGPTGVPGFSGLDGIPGLPGPD
GPRGKPGLDGCNGSRGDPGFPGEAGRIGPRGSFGIPGQKGEKGNSMYVSQFVKGPPGDRG
DPGSRGMPGPRGERGPRGPPGFPGQPGIQGTTGPPGLPGEQGNPGIGVEGQKGEPGDVGP
PGSAGQPLLVGPPDSQLLKGEKGVKGMPGNIGAKGLRGRKGSLGIGEKGERGIPGFPGLR
GSPGSYGSSGIPGSKGETGMAGFPGEDGLPGIKGDLGDNGLPGPPGPRGTPRPGIKGLQG
DPGEPGPPGNVGADGLTGPPGAYGRQGEDGASFPGPKGILGVQGPQGFRGDPGLPAVADM
APGRPGSPGLPGFPGTPGKQGLPGPPGVACTGRGSPGPPGAKGQKGSPGERGAKGEKGSA
SSCLCGAGPCGAAGIRGPPGVPGRKGEVGLPGKYGRIGDPGLPGAVGPPGSPGIPGPFGL
TGEKGDKGDPARIRIKGIKGQRGLQGEPGFPGRNGIAGRNGELGLPGEKGFKGFDGRSLP
GYKGFPGSPGLPGSKGPIGPTGLGIQGLQGVRGLPGSPGSPGIRGPPGPKGEKGATLPYT
AAYPGNPGAPGFKGISGPKGLRGQPGRAGPNGFDGFKGQQGKPGIPGNPGPEGFRGETGD
QGAQGESGPRLDGAPGLPGPPGLEGPKGILGDNSYGPPGIPGNRGLPGLPGLQGLRGEPG
FAGLQGQPGIPGFPGAKGLRGRKGDIGVTGGPGSPGLPCDKGLQGLPGPPGSFGPPGFPG
LQGFKGPKGDMGAPGPAGMKGMPGFPGVQGPPGLPGLRGKPGLPGENGLPGRPGQKGSQG
SQGMQGFPGLPGSEGQMGAPGVKGEEGQAGPRGPPGECGSMGLKGERGPPGEDGCVFILK
EKGQKGEPGLPGDKGIPGTQGDKGNTGFRGIPGSPGRSALPGTRKGEPGDAGQAGFQGPP
GLPGPAGLRGITGFQGPQGDQGEQGLPGIPGSSGLDGAKGSKGNRGDPAASYGQPGKKGP
AGDRGLPGLDGLPGEQGITGVQGRPGRQGPKGLTGYSGTPGFPGIQGAAGVPGALGEQGN
PGLLGAPGFQGLPGSPGRKGLSGPPGLNGLNGLQGQKGLPGSPGLSEMGPAGCIGEPGPK
GNRGEPGLPGISRPGPPGDAGLLGPPGKPGPSGPAGPMGQPSVNILPGPPGDQGPAGLDG
VRGLPGKPGPPGKTILIKGDPGDCGALGAPGIPGPPGKPGPKGITGNQGREGSKGPTGNP
GPQGPPGAPGEPGDQGLRGSTGPLGPKGCRGDPGEPGSVDYSSCPKIPGPPGVLGPRGSP
GVVGLRGPAGFPGPPGEKGEEGLLGQQGPDGLPGPPGPPGDEGNIGEKGYTGLQGFPGEI
GMPGPPGPNTRAAGGFLIVVHSQSDQVPLCPEGMPRLWTGYSLLYLEGQEKAHNQDLGLA
GSCLPVFSTMPFAYCNVHQVCYYASRNDKSYWLSSAAPLPMMPLSEEEIQPYISRCAVCE
APAQAVAIHSQDQSIPPCPSNWGSLWIGYSFLMHTGSGDQGGGQSLMSTGSCLEDFRSAP
FIECQGQRGTCQFFTNEYSFWLSTVNPEMQFTSVPHSETLKDEQEQRRNVGRCQVCMKHG
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgtgttctttaaaacggattacatttattttcacagctgcatgttggctgatatttgtt
ctttcactccaaccagttaaagggggtcagtatgcatatattagtcgttgtggtggacag
gattgcacagcttgtcaatgttttcccgagaaaggttcaagaggtcaacctggtcagatg
ggaccccagggtccaattggggctttgggtttaataggacccattggtttgccaggagta
aaaggtcagaggggtgatattggtctgcctgggccaagtggacaaagaggaagtaagggt
cctactggtgttccaggattttcaggtttagacggtatacctgggttaccaggacctgat
ggacccagaggtaagcctggcttggatgggtgcaatggctcaaggggagatccaggattt
cccggagaggctggtcgtattggcccaagaggctccttcggtattcctggtcaaaaggga
gaaaaaggaaattccatgtatgtttctcagttcgttaaagggcctccgggagacagaggg
gatcctggatcccgtggcatgcctggccccagaggagaaagggggccaagaggtccacct
ggatttccaggccaaccaggcatacagggtactacaggtcctcctggtttgccaggcgag
cagggaaatccaggaattggagtggaaggacagaaaggggagccgggtgatgttggacct
cctgggtctgcagggcagcctttattagttggacctcctgattctcaactgttaaaggga
gaaaagggtgtaaaaggaatgcctggaaatataggtgccaaaggattgcgtggccgcaaa
ggttcacttggaattggagagaagggtgaaagggggattcctggctttcctggattgcgg
gggagtccaggttcttatggatcgtcaggaattccaggaagcaagggtgaaactggaatg
gctggatttcctggagaggatgggcttccaggaattaagggggatctaggagacaatggg
ctgccaggtccaccaggacctcgaggaacaccacgccctggaataaaaggtcttcaagga
gaccctggagaacctggacctcctggaaatgtgggggcagatgggttgacgggccctcct
ggtgcttatggcaggcaaggggaagatggagccagtttccctggtcccaaaggtatattg
ggagtacaagggcctcagggctttcgaggtgaccctggtctccctgctgtagctgacatg
gcaccaggaaggcctggctctccagggttgccgggttttccaggaacaccaggaaaacag
ggcttgcctggaccacctggtgtggcttgtactgggagagggtctcctggaccaccagga
gctaaaggccagaagggatcccctggagaaagaggtgcaaaaggagagaaagggagtgca
agtagctgcttatgtggtgctggtccttgtggtgcagctggaatacgaggtccgccaggt
gtccctggaagaaaaggagaagtagggttacctggaaaatatggaagaataggtgatcca
ggcttacctggtgcagtagggccaccaggttcccccggaataccaggtccatttgggttg
actggtgaaaaaggtgataagggtgacccagctagaataagaataaaagggataaaagga
caaagaggtcttcaaggcgagcctggatttccaggaagaaatggcattgctggcaggaat
ggagaactaggactgcctggtgaaaagggttttaaggggtttgatggaagatctttgcca
ggttataaaggatttcctggttcccctggacttcctggctcaaaagggccaataggacca
acgggtcttggaattcagggtctgcaaggtgtccggggtctgcctggaagtccaggaagc
ccaggtattagaggaccacctggcccaaaaggtgaaaaaggtgctactcttccttacaca
gcagcataccctgggaatccaggtgcacctggttttaaaggtatatcaggcccgaaagga
ttgagagggcagcctgggcgagctggtcccaatggttttgatggcttcaaaggccaacag
ggcaaaccaggaataccagggaatcctggtccagaaggtttcaggggtgagactggtgat
caaggtgcacaaggtgaaagtggtccaaggctggatggtgctccagggttgccaggtcct
cctggccttgaaggtccaaaaggcattttaggtgacaacagttatggtcctccaggaatt
ccaggcaacagaggtcttcccggtttaccaggcctgcaaggcttaagaggtgaaccaggt
tttgctgggcttcaaggacagcctggcatcccaggatttccaggagctaaaggtctcagg
ggtagaaaaggtgacataggagtcacaggaggccctgggtcacctggtctgccatgtgac
aaaggcttgcaggggctgccaggacccccaggctcttttggaccaccaggctttccaggt
ttacaaggcttcaagggtcctaaaggtgatatgggtgcaccaggcccagctggaatgaaa
ggcatgcctgggtttcctggagtacaagggccacctggcctcccaggcttaagaggaaaa
ccaggtcttccaggggaaaatggattgccaggccgcccagggcaaaaagggagccaaggg
tcccaaggcatgcagggtttcccaggactcccaggaagtgaaggacaaatgggagcacct
ggtgtgaaaggtgaagaaggacaagcaggtccgcgtggccctccaggagaatgtgggtct
atgggattaaaaggtgaaagaggacctccaggagaggatggctgcgttttcatattgaaa
gagaaaggacaaaaaggggagccaggccttcctggtgataaaggcatcccaggaacacag
ggtgataaaggcaacactggattcagaggaatcccaggatcaccaggcagaagtgcactt
ccaggtactcgaaaaggcgaacctggcgatgctggacaggctggttttcaagggcctccc
ggtctcccaggacccgcaggactgagaggaatcactggctttcaaggaccacaaggtgac
cagggtgaacagggattgccagggattccaggaagttcaggacttgatggtgcaaaagga
tctaaaggtaacagaggtgacccagctgcctcttatggtcagcctggtaagaaaggtcct
gcaggagatcgaggattgccaggacttgatggattaccaggggagcaaggaatcacaggt
gtccaagggagaccaggaagacagggacccaaaggactaactggatactcaggaacacct
ggcttcccaggtatccaaggagctgcaggcgttccaggagctctaggtgaacaaggtaat
cctggtcttttgggagctccaggttttcaaggattacctggcagtcctgggagaaaaggc
ctttcgggaccgcctggattaaatggcctgaatggactacagggtcaaaagggtttgcca
ggatctccaggtttaagtgaaatggggcctgcaggatgcataggagaacctgggccaaaa
ggcaacagaggagaacctgggctaccaggaatttcccgtccaggtccccctggagatgca
ggactattaggtcctcctggcaagccaggtccttctgggcctgccggtcctatgggacag
ccttctgtaaatatacttcctgggcctccaggtgaccaaggccctgctggattagatggt
gttagaggtctcccaggcaaacctggtcctccagggaagactattctcattaaaggagac
ccaggtgactgtggggctttgggggcacctgggattcctggtcctcctggcaaacctgga
cctaaaggtatcacgggaaatcaaggaagagaaggctcaaaaggtccaacaggaaaccct
ggcccacagggacctcctggtgcccctggagagcctggagatcaaggtttgcgaggatca
actggtcctttgggtcccaaaggttgcagaggtgacccaggagaacctggaagtgttgat
tattcctcatgtcccaagattccagggcctcctggtgtattgggcccaagaggatcacca
ggtgtcgtaggattaagagggccagcaggcttccctggtcccccaggagagaaaggagaa
gaaggattattgggtcaacagggtccagatggcttgcctgggccaccaggaccccctggt
gatgaaggtaacataggagaaaaaggatacacaggattacaaggttttccaggtgaaatt
ggaatgccaggtccaccagggcctaacacaagagctgccggtgggttcctgattgttgtt
catagtcaatcagatcaagtgccactgtgcccagagggaatgccaaggttgtggactgga
tatagcctgctgtatcttgaagggcaggagaaggctcataatcaagatcttggtcttgct
ggatcttgtctccctgtgttcagcaccatgccctttgcctattgcaatgtccatcaggtc
tgctactatgcaagtcgaaatgataaatcttactggctgtcaagcgcagcccctttgccc
atgatgcccctctctgaagaagaaatacaaccttacattagcagatgtgctgtctgtgaa
gctcccgcccaagctgttgcaattcatagtcaagatcaatccattcctccctgtccatca
aactggggaagcctatggataggctactcatttttaatgcacactggatctggtgaccag
ggaggtggacagtctctcatgtcaactggaagctgccttgaggacttcagatcagcaccc
ttcattgaatgccagggtcagcgagggacatgccaattttttaccaatgaatacagcttc
tggttaagtactgtaaacccagagatgcagtttacttcagtccctcattcagagactctc
aaagatgagcaagaacaacgccgcaatgtaggtagatgccaggtctgcatgaaacatggc
taa
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