Zootoca vivipara (common lizard): 118095412
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Entry
118095412 CDS
T07275
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118095412 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zvi03041
]
118095412 (SF3B1)
03036 Chromosome and associated proteins [BR:
zvi03036
]
118095412 (SF3B1)
Spliceosome [BR:
zvi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118095412 (SF3B1)
Complex B
118095412 (SF3B1)
Complex C
U2 SnRNP specific factors
118095412 (SF3B1)
Chromosome and associated proteins [BR:
zvi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
118095412 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
118095412
NCBI-ProteinID:
XP_034992551
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All DBs
Position
LG1:complement(120312738..120337684)
Genome browser
AA seq
1302 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGTTPKKLSNWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT
PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYV
PIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDV
DESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSP
TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAK
AAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARH
TGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIE
SFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDE
EMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELAN
KVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQE
QTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVM
KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTP
ILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG
YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN
VQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGF
GCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVR
DVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaatccaaggc
aaaaaagctgcccttgatgaagctcaaggagtgggccttgattctacaggatattatgac
caagagatctatggcgggagtgatagcagattcgctggatatgtaacttcaatcgcagca
actgagctagaagacgatgacgacgactactcttctacaagcctgcttggccagaagaaa
cctggataccatgcaccagtggcactccttaatgacataccacagtcaaccgaacagtat
gatccgtttgctgagcatcgtccacaaaagatcgctgatcgggaagatgaatacaaaaac
cgcaggcggatgatgattatttcccctgagcgtcttgatccttttgcagatggagggaag
acacctgaccctaaaatgaatgcgagaacatatatggatgttatgcgtgaacaacatttg
acaaaagaagagagggaaattaggcagcaactagcagaaaaggctaaggccggcgaactg
aaagtcgtcaatggggctgcgtcccagccaccatcaaaacgcaaacggcgttgggatcag
actgctgaccagactcctggtaccacaccgaagaaattatctaactgggatcaagctgag
acccctggacatactccatctttgcgatgggatgaaacacctggccgtgcaaagggtagt
gagacacctggagcaacacctggatctaaaatatgggatccaactcctagccatacacca
gcaggagctgcaacacctgggcgtggggacactcctgggcatgcaacaccaggccacgga
ggcgcaacttccagtgcacggaaaaatcgatgggatgagactcccaaaacagaaagagat
actcctggacatgggagtggttgggctgaaacgcctcgtactgatcgaggtggcgattcc
attggtgaaacaccaacccctggggcaagcaaaagaaaatcacgttgggatgaaacgcct
gcaagccagatgggggggagcacccctgtgttgacacccggcaaaacaccaattggtaca
ccagctatgaacatggcaacccccacaccaggtcacatcatgagcatgactcctgaacag
ctccaagcttggcggtgggaaagagaaatagatgagagaaataggccactttctgatgaa
gaacttgatgccatgtttcctgagggatacagggttctccctcctccagcgggttatgtc
cctatccgtactccggctcgtaaacttacggcgacgccaacacctctgggcggcatgact
ggattccacatgcaaactgaagacaggaccatgaagagtgtcaatgaccagccctcagga
aatcttcctttcctaaaaccagatgacatacagtattttgataaactactggtcgatgtt
gacgaatcaacactcagtccagaggagcagaaagaaagaaaaataatgaaattgcttttg
aagattaagaatggcacccctcccatgagaaaggctgctttgcgacagattactgataaa
gctcgtgaatttggggcaggcccgctgttcaatcagattttacccttgctgatgtcacca
actcttgaagaccaagaacgccatttgcttgtcaaagttattgatagaatcttgtacaaa
ttagatgacctggtccgaccatatgtccacaagattcttgtggtcattgaaccgttgctg
attgatgaagactactatgccagggtagaaggcagagaaattatttccaacttggctaag
gctgctggactggcaacaatgatttccactatgcgacctgatatcgataacatggatgaa
tacgttcgtaacacaacggctcgagcctttgctgtggtcgcctctgctttgggcattcca
tctctcttgccctttttaaaagccgtgtgcaaaagcaagaagtcctggcaagctaggcac
actggtatcaagattgtgcagcaaattgctattcttatgggctgtgccattttgcctcat
ctcagaagtttggttgaaatcattgagcatggcttggtggatgagcagcagaaagtacgt
accatcagtgctttggctattgctgctttagctgaggcagcaactccctatggcatagaa
tcatttgactctgttttgaagcccctgtggaagggtatacgccagcacagaggaaagggc
ctggctgccttcttgaaagctatcgggtaccttattccacttatggatgcagaatatgcc
aattactataccagggaagtaatgttgatccttatcagagagttccagtctcctgatgaa
gaaatgaaaaagattgtgctgaaggtagtcaagcagtgctgtggaacagatggtgttgaa
gcaaactacattaaaacagagattctgcccccatttttcaagcacttttggcagcacaga
atggcactggacagaagaaattacagacagttggttgacacaactgtggagcttgcaaac
aaagttggagcagcggaaataatttccaggattgtggatgatctgaaagatgaagctgag
cagtacaggaagatggttatggagacaattgagaaaatcatggggaatctgggagcggct
gatattgaccacaagctggaagaacagcttattgatggtatcctgtacgccttccaagaa
cagaccacagaggactccgtgatgttgaatggatttggaacagtggtcaatgctctcggc
aagcgagttaaaccgtacttgccccagatctgtggtacggttttgtggcgtttgaacaac
aagtcagccaaagtaaggcagcaggctgctgacctgatatcccgtactgcagttgtcatg
aagacttgtcaggaggaaaagttgatgggacacttgggtgtggtattatatgagtacctg
ggtgaagaatatcctgaagtgttgggcagtattctcggagcacttaaagctattgtgaat
gtcataggtatgcacaaaatgacccctccgattaaagacttgctgccaaggctcacacct
atcttgaagaacagacatgaaaaagtgcaggagaattgtattgacctggttgggcgtatt
gcagacaggggggcagaatatgtttctgcaagagagtggatgagaatctgctttgaactg
ctggagttgctaaaagctcataagaaagccatccgaagagcaactgtgaacacatttggt
tatattgcaaaggctatcggaccacacgatgtgctggcgacgctgctaaataatttgaaa
gtccaagaaagacaaaacagagtgtgtacaacagtagcaatagctattgtagctgaaacc
tgctcccctttcacagtgctgcctgcgctcatgaatgaatacagagttccagaactgaat
gtccagaatggtgtattaaaatcactttccttcctctttgagtatattggagaaatggga
aaggactacatttatgctgtaaccccattgcttgaagatgctttaatggacagggacctt
gttcacagacaaaccgccagtgctgtggtgcaacatatgtcgcttggagtatacggcttt
ggctgcgaagactctttgaatcacttactgaattacgtgtggcccaatgtgtttgagaca
tcgccccatgtcatccaagcagttatgggagcgctggaaggactgagggttgctattgga
ccttgccggatgttacagtattgtttacagggtttgtttcaccctgccagaaaagtcaga
gacgtgtactggaagatctacaattccatctacattggttcacaggatgctttaatagca
cattacccacgaatctacaatgacgaaaaaaacacctacattcgttacgaactcgattat
gtcttgtaa
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integrated database retrieval system
