Zootoca vivipara (common lizard): 118096609
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Entry
118096609 CDS
T07275
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
zvi
Zootoca vivipara (common lizard)
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zvi00536
]
118096609 (COL13A1)
Glycosaminoglycan binding proteins [BR:
zvi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118096609 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118096609
NCBI-ProteinID:
XP_034994485
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Position
LG14:26117135..26265739
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AA seq
750 aa
AA seq
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MVVEEKGWKGAAPGALESGCLTHPRTGDGERCCKIPLLLSSGLPGVSLLSLVLSLLLYFR
TSDLQSRVSDLEADRSTPLPACLSADQMETAILGRVDQLLAERLQFNMPRHREARDIHQR
CNCPAGPPGPSGRPGLPGDKGAMGIRGLPGLKGQPGEKGAPGEAGISIIGPRGPPGQPGT
RGFPGFPGQIGLDGKPGQPGQKGEAGPAGPKGQPGTTGQKGEKGQCGDYPHRLLPLLNSV
RLAPPPVIKRRTFQPLLAVDHTPGSLCCTDDSVVFNAPQGEQGQAGIQGPPGPPGPPGLP
GTPGPTGPTGPAGKAGEPGKPGKDGKGLPGPPGPKGDPGIQGYHGRKGEVGEAGLPGTPG
LPGPSGPKGEKGEPSMKGERGMPGLPGKQGVQGDPGIAVAGMKGEPGIPGTKGERGVAGK
MGPPGLPGKRGQRGEKGKPGDPGPPGTIGQKGDKGDSDNALGGGKGEPGPPGLPGPPGPK
GPKGEPGKNEMVDYNGNINEALQEIRTLALMGPPGLPGVAGPPGLPGQKGEIGLPGPPGH
DGEKGLDGLAGEKGDQGVPGPLGLTGPIGLPGLTGEKGEPGAKGDTGDSVAGPPGPQGPP
GTPGLQGGRGPKGEAGISGMKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPVGVP
GPAGPKGERGNKGDPGTAGPIGPAGLPGSQGSPGEKGNRGERGKKGSRGPKGDKGDQGAP
GLDAPCPLGEDGLPVQGCWNKGQTPWLIAK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggtggtggaggagaagggctggaagggggctgctcctggtgccttggagagcggctgc
ctcacacatcccaggacaggagatggggaaagatgctgtaagatacctcttctgctgagc
tctgggctgcctggagtatctttactttctttggtgctgagcctcctgctgtacttcagg
acgtcggacctgcaatccagggtttcagatttggaggcagacagatccactccactgcct
gcctgcctctccgcagaccaaatggagacagctattttgggaagagttgaccaactgctt
gctgagagattacagttcaacatgccaagacatcgggaagctagagacatccaccagcga
tgcaactgtccagcaggcccccctggtccttcaggaagacctgggcttccgggagacaaa
ggcgccatggggatccgtggactaccgggactaaaggggcaacctggagagaagggagcc
ccaggagaagccggcatatccatcattggtccccgtggcccaccaggacagcctggaaca
agaggttttcctgggtttccgggtcagattggtttagacggcaaaccagggcaacctgga
cagaagggagaagcgggcccagctggtcccaaaggacaaccaggaaccactggacaaaaa
ggagaaaagggtcaatgtggagattatccacacaggctgttgcctcttctcaattcagtg
cggctggctccacccccagtcataaagagacgcaccttccagcctctgcttgctgtagat
cacactccagggtcattgtgctgcactgatgatagcgttgttttcaatgcacctcagggt
gaacagggacaggcaggaatccaagggcctccagggccacctgggccaccaggcctccca
gggactccaggaccaactggaccaactggaccagctggaaaagcaggagaaccagggaag
cccggcaaggatggaaagggcttgccaggacctcctggaccaaagggggaccctggaatt
caggggtaccatggaagaaagggtgaggtgggtgaggctggcttacctggcacccctggc
cttcctggtccttctggcccaaagggtgaaaaaggggagcctagcatgaagggggagagg
ggcatgccagggctaccaggaaaacaaggagttcagggggatcccggaattgcggtggca
ggcatgaagggtgagccagggattccaggaacaaagggagaacgtggagttgcagggaag
atgggccccccaggtttgccagggaaaagggggcagaggggcgagaaaggaaaacctggt
gatccgggacctcctggaaccataggacaaaagggagataagggagattctgacaatgca
cttggagggggtaaaggggaacctggaccccctggattacctggacctccaggaccaaag
ggtcccaagggtgaaccaggaaagaatgaaatggtagattacaatggcaatatcaatgaa
gctttacaggagatacgaaccttggctcttatggggcctcctggactacctggtgttgca
ggtcctccaggactacctggacagaagggtgaaattggcctgcctggtcctcccggacat
gatggagaaaagggtcttgatggcctagctggagaaaaaggtgatcagggggtgccagga
cctctaggcctaacaggtccaatcggacttccaggattaacaggagagaaaggagaacct
ggagcaaaaggagacactggagattcggtagcagggccaccagggccccagggcccacca
ggaacaccaggtcttcaaggtggtcgaggacctaagggggaagcaggcatttctggaatg
aaaggcgaaaagggtgcccagggagaaaaaggagaccgaggtcctctgggattgcccggt
gcttcaggtttagacggcaggcctggcccaccgggtactccgggaccagttggagttcca
ggaccagcaggaccaaaaggagagaggggcaataaaggagaccctggaacagcaggacca
ataggaccagcaggacttcctggttcacaaggctcaccaggtgaaaaaggaaaccggggg
gaaaggggcaagaaaggctctagggggcctaaaggggataagggagaccaaggagcacct
ggattagatgcaccctgcccattgggggaagatggcttgccagttcaaggatgctggaat
aagggtcaaactccttggctgatagccaaataa
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