Zootoca vivipara (common lizard): 118097109
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Entry
118097109 CDS
T07275
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118097109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118097109
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
118097109
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
118097109
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GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
118097109
NCBI-ProteinID:
XP_034995611
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Position
LG15:12418521..12420209
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AA seq
309 aa
AA seq
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MAEAAAAAALAPATSVEVRLPVPRPRLSQSFSRGAGEWDKDLVAPGDTITTNPGYMRGHG
TYLGDEKLVASVAGVVDRVNKLVCVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRL
DSVLLLSSINLPGGELRRLSAEDELAMRDYLQEGDLISAEVQAVFSDGAISLHTRSLKYG
KLGQGVLVQVSPSLVKRQKTHFHDLTCGASVILGNNGFIWTYPTPKQKNEEPGGFITNLE
PVPLPDREVISRLQNCVVALAAQKQMLYDTSILYCYEASLSHKIKDLLKPEVMDKIVLET
RQRLLELEG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagctgcagcagcagcagcactggccccggcgacatctgtggaagtgcggctc
ccggttccccgccctcgcctgtctcagagcttctcccgcggggcgggcgagtgggacaag
gacctggtggccccgggggacaccatcaccaccaacccaggatacatgagaggccacggg
acatacctgggagacgagaagctcgttgcctctgtggctggtgttgtggacagggtgaac
aagctggtctgtgtgaaagctttgaaaacgagatacaatggtgaagttggtgatattgtg
gttggacgaattacagaggttcagcagaaacggtggaaagtcgagaccaattccaggctg
gattctgtcttgctcctttcatccatcaatctcccaggaggggagctgaggcggctttca
gcagaggatgaactggcaatgcgagattacctgcaggaaggggaccttatcagtgcagaa
gtccaggcggtgttctctgatggggctatatcgctgcacacacggagtctgaaatacgga
aagcttggccaaggtgtgctcgtccaggtgtccccttccctcgtgaagcggcagaagacc
catttccatgacttgacttgtggggcttccgttatccttggcaacaatgggttcatctgg
acctacccaacgcccaaacagaagaatgaggagcctgggggattcatcaccaacctggag
ccggtgcccttgcctgaccgtgaagtgatttcccgactccagaactgcgttgtggctctg
gcagcgcagaaacagatgctctatgacaccagcatcctctactgctatgaggcctccctt
tctcataagatcaaggaccttctcaagccagaggtgatggacaagattgtgctggagacg
cgtcagagactgctggaactggaggggtga
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