Zootoca vivipara (common lizard): 118097402
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Entry
118097402 CDS
T07275
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118097402 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zvi03019
]
118097402 (DDX6)
03036 Chromosome and associated proteins [BR:
zvi03036
]
118097402 (DDX6)
Enzymes [BR:
zvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118097402 (DDX6)
Messenger RNA biogenesis [BR:
zvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118097402 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
118097402 (DDX6)
Chromosome and associated proteins [BR:
zvi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118097402 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
118097402
NCBI-ProteinID:
XP_034996111
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All DBs
Position
LG15:29627242..29646969
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AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPTGGPGGGGTQAQQQMNQLKHPNTINNGTQQQAQ
SMASTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaacagagaaccctgttataatgggtctctccagtcaaaatggacag
ctgaggggccccgttaaacccactggtggcccaggaggcgggggaacacaggctcagcaa
cagatgaaccagctgaaacatcccaacacaatcaataacggcactcagcagcaagcacag
agcatggcctccactatcaaacctggcgatgactggaagaagactttaaaactccctcca
aaagatctgagaattaaaacttcggatgtgacatccacaaaaggaaatgaatttgaagat
tactgcctgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatct
ccgattcaggaggagagcattcccattgctttgtctgggagggatatcttggctagagct
aagaacggaaccggaaagagcggcgcctacctcattcccttacttgaacggcttgactta
aagaaggataacatacaagcaatggtgattgttcccacacgagaacttgccctgcaggtc
agtcagatctgcatccaggtcagcaaacatatgggaggggccaaagtgatggcaaccaca
ggaggaaccaacttgcgtgatgacataatgaggcttgatgatacagtgcatgtggtgata
gctacgccagggaggattctggatctcatcaagaaaggagtagcaaaggtggaccatgtc
cagatgattgttctagatgaggcagacaagctgctgtcccaagattttgttcaaataatg
gaggacattattctcacgctacctaaaaatagacagatcttgctatactcagccactttc
cctttaagtgtacagaagtttatgaattcccacttgcagaaaccttatgagattaacttg
atggaagagctgacactgaagggagttactcagtactatgcctatgtaactgagcgccag
aaagttcattgtctcaacacattattctccaggctccaaatcaaccaatcaatcatcttc
tgcaactcttcccaacgggttgaactactagctaagaaaatttcccagctggggtattcg
tgcttctatatccatgcaaagatgagacaggagcaccgcaatcgtgtgttccacgatttc
cggaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgttgtgataaactttgattttccaaagctggcagaaacttatctccac
cgtattggcagatcaggtcgatttggccaccttgggctagccatcaacttgatcacctat
gatgatcggttcaacctgaagagtattgaggaacagctgggtacagaaatcaagcccatc
cccagtaacattgacaagagcctgtatgtggcagaataccacagtgagcctgtagaagat
gaaaaaccttaa
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