+F Repair protein KO #

  DNA Repair and Recombination Proteins - Aggregatibacter actinomycetemcomitans HK1651

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CF65_02335 methylated-DNA--protein-cysteinemethyltransferase, putative' K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CF65_03000 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CF65_01044 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CF65_01814 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CF65_01085 mutator mutT protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CF65_01313 deoxyuridine 5`-triphosphatenucleotidohydrolase, putative' K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CF65_02335 methylated-DNA--protein-cysteinemethyltransferase, putative' K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CF65_03000 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CF65_01044 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CF65_00920 DNA-3-methyladenine glycosylase I, putative K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CF65_01325 formamidopyrimidine-DNA glycosylase, putative K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CF65_01814 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CF65_02628 exodeoxyribonuclease III, putative K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CF65_01747 single-stranded-DNA-specific exonuclease RecJ,putative' K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CF65_00531 DNA polymerase I, putative K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CF65_01291 excinuclease ABC, A subunit, putative K03701 uvrA; excinuclease ABC subunit A E CF65_02480 excinuclease subunit B, putative K03702 uvrB; excinuclease ABC subunit B E CF65_01954 excinuclease ABC, C subunit, putative K03703 uvrC; excinuclease ABC subunit C E CF65_02666 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CF65_00531 DNA polymerase I, putative K02335 polA; DNA polymerase I [EC:2.7.7.7] E CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CF65_00355 DNA-directed RNA polymerase, beta subunit,putative' K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CF65_00356 DNA-directed RNA polymerase, beta' chain,putative' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CF65_01242 not yet annotated K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CF65_02306 DNA-directed RNA polymerase omega chain,putative' K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CF65_00861 transcription-repair coupling factor, putative K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CF65_00317 DNA mismatch repair protein MutS, putative K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E CF65_01586 mismatch repair protein MutL, putative K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E CF65_02337 DNA mismatch repair protein MutH, putative K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E CF65_02114 exodeoxyribonuclease I, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E CF65_02316 exodeoxyribonuclease VII large subunit,putative' K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CF65_02052 exodeoxyribonuclease vii small subunit,putative' K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CF65_00229 DNA polymerase III, alpha subunit, putative K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CF65_00002 DNA polymerase III, beta subunit, putative K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CF65_01718 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E CF65_01087 DNA polymerase III, delta subunit, putative K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CF65_00302 DNA polymerase III, delta prime subunit,putative' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CF65_02763 DNA polymerase III, epsilon subunit, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CF65_02501 DNA polymerase III, subunits gamma and tau,putative' K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E CF65_02819 DNA polymerase III, psi subunit, putative K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D DNA ligase E CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CF65_02666 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CF65_01292 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein E CF65_01294 DNA-adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CF65_00432 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CF65_02266 exodeoxyribonuclease V, beta subunit, putative K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E CF65_02823 exodeoxyribonuclease V, gamma subunit, putative K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E CF65_02265 exodeoxyribonuclease V, alpha subunit, putative K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CF65_01557 recA protein K03553 recA; recombination protein RecA E CF65_02845 Holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA E CF65_02844 Holliday junction DNA helicase RuvB, putative K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CF65_02846 crossover junction endodeoxyribonuclease RuvC,putative' K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CF65_01335 primosomal protein N`, putative K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CF65_01387 primosomal replication protein N, putative K02686 priB; primosomal replication protein N E CF65_02872 hypothetical protein K04067 priC; primosomal replication protein N'' E CF65_02114 exodeoxyribonuclease I, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E CF65_01557 recA protein K03553 recA; recombination protein RecA E CF65_02735 DNA repair protein RadA, putative K04485 radA; DNA repair protein RadA/Sms E CF65_00003 DNA replication and repair protein RecF,putative' K03629 recF; DNA replication and repair protein RecF E CF65_02303 ATP-dependent DNA helicase RecG, putative K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CF65_01747 single-stranded-DNA-specific exonuclease RecJ,putative' K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CF65_01070 DNA repair protein recO, putative K03584 recO; DNA repair protein RecO (recombination protein O) E CF65_00790 recombination protein RecR, putative K06187 recR; recombination protein RecR E CF65_00769 DNA repair protein RecN, putative K03631 recN; DNA repair protein RecN (Recombination protein N) E CF65_02962 recombination associated protein RdgC, putative K03554 rdgC; recombination associated protein RdgC E CF65_02845 Holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA E CF65_02844 Holliday junction DNA helicase RuvB, putative K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CF65_02846 crossover junction endodeoxyribonuclease RuvC,putative' K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E CF65_00988 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CF65_02519 DNA gyrase, subunit A, putative K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CF65_00929 DNA gyrase, B subunit, putative K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CF65_02128 DNA topoisomerase I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CF65_00972 DNA-binding protein HU-alpha, putative K05787 hupA; DNA-binding protein HU-alpha D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CF65_01747 single-stranded-DNA-specific exonuclease RecJ,putative' K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CF65_01070 DNA repair protein recO, putative K03584 recO; DNA repair protein RecO (recombination protein O) F CF65_00790 recombination protein RecR, putative K06187 recR; recombination protein RecR F CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CF65_00171 DNA binding protein Fis, putative K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F CF65_02163 integration host factor, alpha subunit,putative' K04764 ihfA; integration host factor subunit alpha F CF65_02527 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F CF65_02114 exodeoxyribonuclease I, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F CF65_00927 ATP-dependent DNA helicase RecQ, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CF65_01291 excinuclease ABC, A subunit, putative K03701 uvrA; excinuclease ABC subunit A F CF65_02480 excinuclease subunit B, putative K03702 uvrB; excinuclease ABC subunit B F CF65_02292 DNA-binding protein H-NS, putative K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CF65_00634 DNA-damage-inducible protein P, putative K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CF65_00632 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D CF65_01557 recA protein K03553 recA; recombination protein RecA D CF65_01390 LexA repressor, putative K01356 lexA; repressor LexA [EC:3.4.21.88] D CF65_00769 DNA repair protein RecN, putative K03631 recN; DNA repair protein RecN (Recombination protein N) D CF65_01292 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein D CF65_01559 recX protein, putative K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CF65_00527 ATP-dependent DNA helicase, putative K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CF65_00021 helicase IV, putative K03658 helD; DNA helicase IV [EC:5.6.2.4] D CF65_02601 ATP-dependent helicase, putative K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D CF65_01085 mutator mutT protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CF65_01313 deoxyuridine 5`-triphosphatenucleotidohydrolase, putative' K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CF65_02210 ribonucleotide reductase, alpha subunit,putative' K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CF65_01637 ribonucleoside-diphosphate reductase 1, alphachain, putative' K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CF65_01635 ribonucleoside-diphosphate reductase 1, betachain, putative' K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CF65_02212 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024