+F Repair protein KO
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DNA Repair and Recombination Proteins - Aggregatibacter actinomycetemcomitans HK1651
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CF65_02335 methylated-DNA--protein-cysteinemethyltransferase, putative' K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CF65_03000 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CF65_01044 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E CF65_01814 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D CF65_01085 mutator mutT protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CF65_01313 deoxyuridine 5`-triphosphatenucleotidohydrolase, putative' K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CF65_02335 methylated-DNA--protein-cysteinemethyltransferase, putative' K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CF65_03000 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CF65_01044 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E CF65_00920 DNA-3-methyladenine glycosylase I, putative K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E CF65_01325 formamidopyrimidine-DNA glycosylase, putative K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E CF65_01814 endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E CF65_02628 exodeoxyribonuclease III, putative K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E CF65_01747 single-stranded-DNA-specific exonuclease RecJ,putative' K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E CF65_00531 DNA polymerase I, putative K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E CF65_01291 excinuclease ABC, A subunit, putative K03701 uvrA; excinuclease ABC subunit A
E CF65_02480 excinuclease subunit B, putative K03702 uvrB; excinuclease ABC subunit B
E CF65_01954 excinuclease ABC, C subunit, putative K03703 uvrC; excinuclease ABC subunit C
E CF65_02666 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CF65_00531 DNA polymerase I, putative K02335 polA; DNA polymerase I [EC:2.7.7.7]
E CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F CF65_00355 DNA-directed RNA polymerase, beta subunit,putative' K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F CF65_00356 DNA-directed RNA polymerase, beta' chain,putative' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CF65_01242 not yet annotated K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F CF65_02306 DNA-directed RNA polymerase omega chain,putative' K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F CF65_00861 transcription-repair coupling factor, putative K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E CF65_00317 DNA mismatch repair protein MutS, putative K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E CF65_01586 mismatch repair protein MutL, putative K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E CF65_02337 DNA mismatch repair protein MutH, putative K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E CF65_02114 exodeoxyribonuclease I, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E CF65_02316 exodeoxyribonuclease VII large subunit,putative' K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E CF65_02052 exodeoxyribonuclease vii small subunit,putative' K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E CF65_00229 DNA polymerase III, alpha subunit, putative K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E CF65_00002 DNA polymerase III, beta subunit, putative K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E CF65_01718 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E CF65_01087 DNA polymerase III, delta subunit, putative K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E CF65_00302 DNA polymerase III, delta prime subunit,putative' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E CF65_02763 DNA polymerase III, epsilon subunit, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CF65_02501 DNA polymerase III, subunits gamma and tau,putative' K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E CF65_02819 DNA polymerase III, psi subunit, putative K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DNA ligase
E CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E CF65_02666 DNA helicase II, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CF65_01292 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein
E CF65_01294 DNA-adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E CF65_00432 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E CF65_02266 exodeoxyribonuclease V, beta subunit, putative K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E CF65_02823 exodeoxyribonuclease V, gamma subunit, putative K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E CF65_02265 exodeoxyribonuclease V, alpha subunit, putative K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E CF65_01557 recA protein K03553 recA; recombination protein RecA
E CF65_02845 Holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA
E CF65_02844 Holliday junction DNA helicase RuvB, putative K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E CF65_02846 crossover junction endodeoxyribonuclease RuvC,putative' K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E CF65_01335 primosomal protein N`, putative K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E CF65_01387 primosomal replication protein N, putative K02686 priB; primosomal replication protein N
E CF65_02872 hypothetical protein K04067 priC; primosomal replication protein N''
E CF65_02114 exodeoxyribonuclease I, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E CF65_01557 recA protein K03553 recA; recombination protein RecA
E CF65_02735 DNA repair protein RadA, putative K04485 radA; DNA repair protein RadA/Sms
E CF65_00003 DNA replication and repair protein RecF,putative' K03629 recF; DNA replication and repair protein RecF
E CF65_02303 ATP-dependent DNA helicase RecG, putative K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CF65_01747 single-stranded-DNA-specific exonuclease RecJ,putative' K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E CF65_01070 DNA repair protein recO, putative K03584 recO; DNA repair protein RecO (recombination protein O)
E CF65_00790 recombination protein RecR, putative K06187 recR; recombination protein RecR
E CF65_00769 DNA repair protein RecN, putative K03631 recN; DNA repair protein RecN (Recombination protein N)
E CF65_02962 recombination associated protein RdgC, putative K03554 rdgC; recombination associated protein RdgC
E CF65_02845 Holliday junction DNA helicase RuvA, putative K03550 ruvA; holliday junction DNA helicase RuvA
E CF65_02844 Holliday junction DNA helicase RuvB, putative K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E CF65_02846 crossover junction endodeoxyribonuclease RuvC,putative' K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E CF65_00988 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F CF65_02519 DNA gyrase, subunit A, putative K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F CF65_00929 DNA gyrase, B subunit, putative K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F CF65_02128 DNA topoisomerase I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F CF65_00972 DNA-binding protein HU-alpha, putative K05787 hupA; DNA-binding protein HU-alpha
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F CF65_01747 single-stranded-DNA-specific exonuclease RecJ,putative' K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F CF65_01070 DNA repair protein recO, putative K03584 recO; DNA repair protein RecO (recombination protein O)
F CF65_00790 recombination protein RecR, putative K06187 recR; recombination protein RecR
F CF65_02409 DNA ligase, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F CF65_00171 DNA binding protein Fis, putative K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F CF65_02163 integration host factor, alpha subunit,putative' K04764 ihfA; integration host factor subunit alpha
F CF65_02527 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F CF65_02114 exodeoxyribonuclease I, putative K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F CF65_00927 ATP-dependent DNA helicase RecQ, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F CF65_01291 excinuclease ABC, A subunit, putative K03701 uvrA; excinuclease ABC subunit A
F CF65_02480 excinuclease subunit B, putative K03702 uvrB; excinuclease ABC subunit B
F CF65_02292 DNA-binding protein H-NS, putative K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D CF65_00634 DNA-damage-inducible protein P, putative K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CF65_00632 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D CF65_01557 recA protein K03553 recA; recombination protein RecA
D CF65_01390 LexA repressor, putative K01356 lexA; repressor LexA [EC:3.4.21.88]
D CF65_00769 DNA repair protein RecN, putative K03631 recN; DNA repair protein RecN (Recombination protein N)
D CF65_01292 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein
D CF65_01559 recX protein, putative K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D CF65_00527 ATP-dependent DNA helicase, putative K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D CF65_00021 helicase IV, putative K03658 helD; DNA helicase IV [EC:5.6.2.4]
D CF65_02601 ATP-dependent helicase, putative K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D CF65_01085 mutator mutT protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CF65_01313 deoxyuridine 5`-triphosphatenucleotidohydrolase, putative' K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CF65_02210 ribonucleotide reductase, alpha subunit,putative' K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CF65_01637 ribonucleoside-diphosphate reductase 1, alphachain, putative' K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CF65_01635 ribonucleoside-diphosphate reductase 1, betachain, putative' K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CF65_02212 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024