+D GENES KO
#
KEGG Orthology (KO) - Actinobacillus arthritidis
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:aart00010]
D NYR89_00825 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NYR89_10355 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NYR89_07770 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NYR89_02810 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NYR89_04560 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NYR89_01415 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NYR89_04055 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NYR89_06175 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NYR89_07150 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D NYR89_05310 galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D NYR89_07420 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D NYR89_02550 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D NYR89_06960 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:aart00020]
D NYR89_04480 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D NYR89_04485 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NYR89_04500 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NYR89_09675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYR89_09680 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D NYR89_09685 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D NYR89_00260 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYR89_09930 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D NYR89_02550 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D NYR89_04055 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
C 00030 Pentose phosphate pathway [PATH:aart00030]
D NYR89_00825 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYR89_00190 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NYR89_00195 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D NYR89_00220 gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NYR89_08090 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NYR89_06655 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D NYR89_05720 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D NYR89_09155 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D NYR89_09070 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D NYR89_04065 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NYR89_05735 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D NYR89_01100 PQQ-dependent sugar dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D NYR89_09035 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D NYR89_05740 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D NYR89_10355 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:aart00040]
D NYR89_05745 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D NYR89_05780 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D NYR89_03565 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYR89_09125 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D NYR89_09130 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D NYR89_08090 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NYR89_09590 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
C 00051 Fructose and mannose metabolism [PATH:aart00051]
D NYR89_06775 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D NYR89_10385 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D NYR89_03185 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NYR89_10355 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NYR89_08840 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D NYR89_00720 srlD; sorbitol-6-phosphate dehydrogenase K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]
D NYR89_02290 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D NYR89_07770 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NYR89_09025 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D NYR89_10400 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D NYR89_09015 manZ; PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_10395 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_00730 HAD-IA family hydrolase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
D NYR89_06150 HAD-IA family hydrolase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
D NYR89_00715 srlB; PTS glucitol/sorbitol transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
C 00052 Galactose metabolism [PATH:aart00052]
D NYR89_05310 galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D NYR89_05305 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D NYR89_05300 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D NYR89_00240 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NYR89_03565 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYR89_10285 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NYR89_06770 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D NYR89_05770 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:aart00053]
D NYR89_09105 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D NYR89_09255 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D NYR89_08685 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D NYR89_09110 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D NYR89_08690 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D NYR89_09125 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D NYR89_09130 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:aart00500]
D NYR89_06935 sucrose-specific PTS transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D NYR89_06770 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D NYR89_05770 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D NYR89_03565 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYR89_02315 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D NYR89_02320 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D NYR89_02305 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NYR89_02325 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D NYR89_06015 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D NYR89_06960 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D NYR89_00825 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYR89_06775 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:aart00520]
D NYR89_01555 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NYR89_06960 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D NYR89_04770 nagK; N-acetylglucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D NYR89_08535 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D NYR89_06775 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D NYR89_10090 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D NYR89_03170 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NYR89_09635 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D NYR89_08600 neuB; N-acetylneuraminate synthase K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]
D NYR89_08540 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D NYR89_08595 GDSL-type esterase/lipase family protein K00983 neuA; N-acylneuraminate cytidylyltransferase [EC:2.7.7.43]
D NYR89_09450 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NYR89_09455 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D NYR89_03565 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYR89_05305 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D NYR89_05300 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D NYR89_00240 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NYR89_10285 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D NYR89_09025 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D NYR89_10400 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D NYR89_09015 manZ; PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_10395 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_00825 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYR89_10385 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D NYR89_03185 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D NYR89_02315 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:aart00620]
D NYR89_04055 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NYR89_06175 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NYR89_07150 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NYR89_03540 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NYR89_01415 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NYR89_09795 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NYR89_10755 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NYR89_00540 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D NYR89_00970 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D NYR89_04775 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D NYR89_06320 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D NYR89_04280 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D NYR89_10480 oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D NYR89_10490 oxaloacetate decarboxylase subunit gamma K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D NYR89_00260 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYR89_09930 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D NYR89_09675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYR89_09680 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D NYR89_09685 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D NYR89_02265 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NYR89_02550 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:aart00630]
D NYR89_00260 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYR89_05265 catalase K03781 katE; catalase [EC:1.11.1.6]
D NYR89_10875 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D NYR89_07610 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D NYR89_07450 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYR89_01860 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYR89_10510 fumarate hydratase K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
D NYR89_10500 ttdB; L(+)-tartrate dehydratase subunit beta K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D NYR89_05735 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D NYR89_02625 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D NYR89_02620 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D NYR89_02615 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:aart00640]
D NYR89_03540 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NYR89_09795 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NYR89_10755 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NYR89_04500 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NYR89_09850 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:aart00650]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NYR89_10480 oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D NYR89_09675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYR89_09680 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D NYR89_09685 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D NYR89_06525 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYR89_03005 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYR89_06530 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:aart00660]
D NYR89_06525 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYR89_03005 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYR89_06530 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D NYR89_04500 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NYR89_00515 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
C 00562 Inositol phosphate metabolism
D NYR89_07770 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:aart00190]
D NYR89_00420 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D NYR89_09675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYR89_09680 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D NYR89_09685 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D NYR89_08955 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NYR89_08950 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NYR89_08975 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NYR89_08970 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NYR89_07640 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:aart00710]
D NYR89_02810 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NYR89_10355 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NYR89_07770 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NYR89_08090 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NYR89_06655 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D NYR89_02265 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NYR89_02550 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D NYR89_04280 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D NYR89_00260 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Carbon fixation pathways in prokaryotes [PATH:aart00720]
D NYR89_02265 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NYR89_00260 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYR89_09675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYR89_09680 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D NYR89_09685 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D NYR89_04500 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NYR89_09795 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NYR89_10755 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NYR89_04385 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D NYR89_04945 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D NYR89_04645 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D NYR89_03540 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:aart00680]
D NYR89_06175 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NYR89_06200 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D NYR89_02625 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D NYR89_02620 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D NYR89_02615 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D NYR89_01860 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYR89_10875 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D NYR89_02265 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NYR89_00260 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYR89_10355 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NYR89_08200 pentahemic C cytochrome K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D NYR89_08210 torD; molecular chaperone TorD K03533 torD; TorA specific chaperone
D NYR89_03540 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NYR89_04560 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NYR89_03845 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NYR89_06070 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:aart00910]
D NYR89_09900 nitrate reductase cytochrome c-type subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D NYR89_06520 nrfA; ammonia-forming nitrite reductase cytochrome c552 subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D NYR89_06780 nirK; copper-containing nitrite reductase K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D NYR89_02765 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D NYR89_07450 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYR89_03015 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:aart00920]
D NYR89_10590 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NYR89_10595 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D NYR89_10605 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NYR89_10570 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NYR89_00185 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D NYR89_10580 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D NYR89_10565 assimilatory sulfite reductase (NADPH) flavoprotein subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D NYR89_10560 cysI; assimilatory sulfite reductase (NADPH) hemoprotein subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D NYR89_06420 glpE; thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D NYR89_10220 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NYR89_02500 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D NYR89_03755 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D NYR89_09080 dmsB; dimethylsulfoxide reductase subunit B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D NYR89_09085 dimethyl sulfoxide reductase anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:aart00061]
D NYR89_09795 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NYR89_10755 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NYR89_08095 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D NYR89_07170 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NYR89_10445 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NYR89_07175 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYR89_07590 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D NYR89_04810 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NYR89_02950 nitronate monooxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D NYR89_04865 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:aart00071]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NYR89_04865 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NYR89_06175 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:aart00561]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D NYR89_07150 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NYR89_06610 dhaL; dihydroxyacetone kinase subunit DhaL K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D NYR89_06615 dhaM; dihydroxyacetone kinase phosphoryl donor subunit DhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D NYR89_00110 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NYR89_09805 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NYR89_04185 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:aart00564]
D NYR89_04990 glpA; anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D NYR89_04985 glpB; glycerol-3-phosphate dehydrogenase subunit GlpB K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D NYR89_04980 glpC; anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D NYR89_00110 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NYR89_09805 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NYR89_04185 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D NYR89_04995 glpQ; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D NYR89_06975 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NYR89_10010 asd; archaetidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D NYR89_05520 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D NYR89_01375 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D NYR89_04765 phosphatase PAP2 family protein K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D NYR89_05220 yciA; acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:aart00230]
D NYR89_07460 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D NYR89_00180 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D NYR89_04065 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NYR89_06230 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D NYR89_01580 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D NYR89_01635 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D NYR89_03615 purK; 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D NYR89_03605 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D NYR89_07030 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D NYR89_05170 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NYR89_05565 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NYR89_04190 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D NYR89_07725 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NYR89_02785 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D NYR89_03750 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D NYR89_03300 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NYR89_02330 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NYR89_04435 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D NYR89_05615 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D NYR89_00565 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYR89_00560 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NYR89_05280 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NYR89_02115 anti-phage deoxyguanosine triphosphatase K01129 dgt; dGTPase [EC:3.1.5.1]
D NYR89_08065 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NYR89_03860 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D NYR89_04825 relA; GTP diphosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D NYR89_01005 class I adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D NYR89_01745 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NYR89_00570 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D NYR89_00550 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D NYR89_00255 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NYR89_07455 cpdA; 3',5'-cyclic-AMP phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D NYR89_04140 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D NYR89_10570 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NYR89_08800 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D NYR89_08805 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D NYR89_08810 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:aart00240]
D NYR89_04060 pyrD; quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D NYR89_02140 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D NYR89_03960 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D NYR89_03055 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D NYR89_02330 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NYR89_00505 pyrG; CTP synthase (glutamine hydrolyzing) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D NYR89_03985 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D NYR89_04570 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D NYR89_04190 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D NYR89_07725 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NYR89_06275 yjjG; pyrimidine 5'-nucleotidase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D NYR89_04845 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NYR89_00550 ppnN; nucleotide 5'-monophosphate nucleosidase PpnN K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D NYR89_00125 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D NYR89_04575 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D NYR89_00565 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYR89_00560 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NYR89_05280 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NYR89_08120 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D NYR89_07315 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NYR89_03445 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D NYR89_06360 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D NYR89_04375 SDR family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:aart00250]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_03610 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D NYR89_07900 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D NYR89_05845 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D NYR89_01665 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D NYR89_01745 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NYR89_02765 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D NYR89_07450 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00260 Glycine, serine and threonine metabolism [PATH:aart00260]
D NYR89_03870 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYR89_00025 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYR89_05680 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D NYR89_01860 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYR89_10875 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D NYR89_04560 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NYR89_03845 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NYR89_06070 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D NYR89_04375 SDR family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D NYR89_06975 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NYR89_04365 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NYR89_04370 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D NYR89_07270 diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D NYR89_07265 ddc; L-2,4-diaminobutyrate decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:aart00270]
D NYR89_10220 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NYR89_02080 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NYR89_00895 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D NYR89_02785 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D NYR89_00650 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYR89_05890 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NYR89_06130 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D NYR89_03870 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYR89_00025 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYR89_02500 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D NYR89_03755 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D NYR89_06455 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYR89_10005 gshAB; bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_00260 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NYR89_03845 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:aart00280]
D NYR89_06455 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NYR89_01060 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:aart00290]
D NYR89_00515 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D NYR89_06525 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYR89_03005 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYR89_06530 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D NYR89_06535 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NYR89_06455 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYR89_05845 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
C 00300 Lysine biosynthesis [PATH:aart00300]
D NYR89_03870 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYR89_00025 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYR89_03760 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D NYR89_10780 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D NYR89_07515 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D NYR89_09660 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D NYR89_06895 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NYR89_06890 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:aart00310]
D NYR89_04485 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:aart00220]
D NYR89_06925 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D NYR89_08800 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D NYR89_08805 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D NYR89_08810 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D NYR89_07450 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYR89_02765 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_05845 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D NYR89_05700 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D NYR89_05705 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
C 00330 Arginine and proline metabolism [PATH:aart00330]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D NYR89_02680 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NYR89_07545 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:aart00340]
D NYR89_06755 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D NYR89_06720 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D NYR89_06715 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D NYR89_06735 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D NYR89_03840 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_06745 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:aart00350]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_03840 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_06745 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_06175 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:aart00360]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_03840 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_06745 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:aart00380]
D NYR89_04485 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D NYR89_05265 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:aart00400]
D NYR89_01405 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NYR89_03435 aroG; 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NYR89_10770 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D NYR89_00795 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D NYR89_01330 aroK; shikimate kinase AroK K00891 aroK; shikimate kinase [EC:2.7.1.71]
D NYR89_03255 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D NYR89_00860 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NYR89_00855 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NYR89_04365 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NYR89_04370 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D NYR89_01400 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D NYR89_05930 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_03840 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_06745 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:aart00410]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism
D NYR89_03540 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:aart00450]
D NYR89_03755 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D NYR89_02080 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NYR89_00895 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D NYR89_06600 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D NYR89_09075 dimethyl sulfoxide reductase subunit A K07309 ynfE; Tat-targeted selenate reductase subunit YnfE [EC:1.97.1.9]
D NYR89_10570 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NYR89_02205 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D NYR89_02335 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:aart00460]
D NYR89_03610 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D NYR89_07900 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D NYR89_01860 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:aart00470]
D NYR89_05660 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NYR89_06860 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYR89_09660 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
C 00480 Glutathione metabolism [PATH:aart00480]
D NYR89_10005 gshAB; bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D NYR89_01615 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYR89_00105 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D NYR89_00845 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NYR89_01190 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NYR89_09700 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NYR89_06000 gorA; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D NYR89_00220 gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NYR89_00190 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:aart00540]
D NYR89_04815 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D NYR89_06840 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D NYR89_04805 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D NYR89_08145 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D NYR89_00035 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D NYR89_00740 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYR89_04915 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYR89_09240 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYR89_09230 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NYR89_10880 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NYR89_07010 HAD-IIIA family hydrolase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D NYR89_06595 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NYR89_09235 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NYR89_01455 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D NYR89_04930 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NYR89_00700 lpxM; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D NYR89_05985 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D NYR89_02595 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D NYR89_02915 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D NYR89_04840 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D NYR89_04600 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D NYR89_08715 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D NYR89_10035 rfaC; lipopolysaccharide heptosyltransferase RfaC K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D NYR89_10030 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D NYR89_01460 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:aart00542]
D NYR89_09440 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:aart00541]
D NYR89_03565 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NYR89_00240 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NYR89_10285 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D NYR89_10300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NYR89_09465 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D NYR89_09460 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D NYR89_10385 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D NYR89_03185 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D NYR89_03170 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NYR89_09450 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NYR89_09455 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D NYR89_08590 neuC; UDP-N-acetylglucosamine 2-epimerase K24257 neuC; UDP-N-acetylglucosamine 2-epimerase (hydrolysing) [EC:3.2.1.183]
D NYR89_08600 neuB; N-acetylneuraminate synthase K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]
D NYR89_08595 GDSL-type esterase/lipase family protein K00983 neuA; N-acylneuraminate cytidylyltransferase [EC:2.7.7.43]
C 00550 Peptidoglycan biosynthesis [PATH:aart00550]
D NYR89_06865 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NYR89_06895 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NYR89_06860 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYR89_06890 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D NYR89_08075 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D NYR89_09295 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NYR89_06900 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYR89_09280 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:aart00552]
D NYR89_09440 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:aart00543]
D NYR89_09440 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D NYR89_09495 rffM; lipopolysaccharide N-acetylmannosaminouronosyltransferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D NYR89_09485 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D NYR89_10220 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:aart00730]
D NYR89_04245 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D NYR89_02410 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYR89_01750 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D NYR89_01395 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NYR89_04250 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D NYR89_04240 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D NYR89_06285 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D NYR89_03280 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D NYR89_00255 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:aart00740]
D NYR89_04965 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NYR89_04960 ribE; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D NYR89_04970 ribE; riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D NYR89_06985 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D NYR89_04250 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D NYR89_07460 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D NYR89_02210 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D NYR89_03200 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:aart00750]
D NYR89_07075 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D NYR89_09785 pdxY; pyridoxal kinase PdxY K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D NYR89_03845 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NYR89_03075 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:aart00760]
D NYR89_06990 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D NYR89_04190 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D NYR89_07725 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NYR89_06585 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D NYR89_03550 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
D NYR89_02185 cobB; NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D NYR89_01855 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D NYR89_04580 pntB; Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:aart00770]
D NYR89_06525 ilvG; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NYR89_03005 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NYR89_06530 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D NYR89_06535 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NYR89_09755 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D NYR89_07290 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D NYR89_07470 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D NYR89_06455 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:aart00780]
D NYR89_02370 bioC; malonyl-ACP O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D NYR89_07175 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYR89_04810 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NYR89_02365 DUF452 family protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D NYR89_02360 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NYR89_02355 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NYR89_03405 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D NYR89_10620 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:aart00785]
D NYR89_09265 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D NYR89_04055 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NYR89_04480 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D NYR89_04485 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:aart00790]
D NYR89_02600 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D NYR89_03280 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D NYR89_00920 nudB; dihydroneopterin triphosphate diphosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D NYR89_00115 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D NYR89_00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D NYR89_07505 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D NYR89_02685 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D NYR89_03490 folC; bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D NYR89_04965 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NYR89_00750 anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D NYR89_00765 aminotransferase class IV family protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D NYR89_01625 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NYR89_01620 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NYR89_04595 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NYR89_03790 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D NYR89_03805 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D NYR89_09735 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D NYR89_10750 mobA; molybdenum cofactor guanylyltransferase MobA K13818 mobAB; molybdopterin-guanine dinucleotide biosynthesis protein [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:aart00670]
D NYR89_02685 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D NYR89_04385 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D NYR89_04945 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D NYR89_01860 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NYR89_05170 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NYR89_09190 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NYR89_06360 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D NYR89_04645 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D NYR89_06395 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:aart00860]
D NYR89_07195 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NYR89_01980 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D NYR89_01985 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D NYR89_09170 hemG; menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D NYR89_07675 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D NYR89_01990 uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D NYR89_01045 hutZ; heme utilization protein HutZ K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:aart00130]
D NYR89_07885 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D NYR89_04510 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D NYR89_10110 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D NYR89_03200 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D NYR89_02235 FAD-dependent monooxygenase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D NYR89_05465 ubiG; bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D NYR89_02215 ubiH; 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D NYR89_07225 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D NYR89_05850 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D NYR89_08560 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D NYR89_08565 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D NYR89_05160 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D NYR89_03240 menE; o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D NYR89_08070 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D NYR89_09970 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:aart00900]
D NYR89_01395 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NYR89_04820 ispC; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D NYR89_02540 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D NYR89_04070 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D NYR89_02535 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D NYR89_09720 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D NYR89_03200 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D NYR89_02510 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D NYR89_07160 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:aart00907]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D NYR89_10300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D NYR89_05850 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D NYR89_10300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:aart00332]
D NYR89_02680 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NYR89_07545 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:aart00261]
D NYR89_10570 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NYR89_03870 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NYR89_00025 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NYR89_03760 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
D NYR89_10300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
D NYR89_10300 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:aart00401]
D NYR89_01400 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_03840 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_06745 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D NYR89_00860 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NYR89_00855 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D NYR89_07170 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NYR89_07175 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D NYR89_08095 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D NYR89_00795 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:aart00362]
D NYR89_02645 adenylosuccinate lyase family protein K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D NYR89_02445 fdx; ISC system 2Fe-2S type ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D NYR89_10480 oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
C 00627 Aminobenzoate degradation [PATH:aart00627]
D NYR89_00540 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D NYR89_03200 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:aart00625]
D NYR89_06175 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NYR89_07065 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
D NYR89_08800 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D NYR89_08805 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D NYR89_08810 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:aart00930]
D NYR89_02660 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:aart00626]
D NYR89_06175 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:aart03020]
D NYR89_08275 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYR89_08060 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:aart03010]
D NYR89_08380 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D NYR89_08280 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D NYR89_08315 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NYR89_10045 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NYR89_08330 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NYR89_03340 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NYR89_08415 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NYR89_08285 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NYR89_10040 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NYR89_08290 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NYR89_08335 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NYR89_02005 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NYR89_08265 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NYR89_08365 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NYR89_06215 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D NYR89_08390 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NYR89_10305 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NYR89_08660 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NYR89_08395 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NYR89_08410 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NYR89_08405 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D NYR89_08340 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NYR89_08325 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NYR89_03335 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NYR89_08350 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D NYR89_08305 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NYR89_08270 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NYR89_08250 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NYR89_07135 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NYR89_08385 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D NYR89_08400 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D NYR89_04275 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D NYR89_07130 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NYR89_07280 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NYR89_08370 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NYR89_08310 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NYR89_02050 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NYR89_08085 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NYR89_10435 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D NYR89_07275 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NYR89_07435 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D NYR89_01885 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D NYR89_08080 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D NYR89_08295 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D NYR89_08935 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_05650 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_10530 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_09515 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_07875 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_06650 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_06635 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_05640 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_08920 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_07865 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_10545 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_09525 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_09535 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_09530 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_05635 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_06630 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_07860 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_08915 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_10550 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:aart00970]
D NYR89_00360 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_06640 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_10540 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_08925 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_09500 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_07785 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_04955 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_07790 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_02105 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NYR89_09425 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NYR89_09415 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NYR89_00325 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NYR89_00330 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NYR89_09540 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NYR89_04210 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D NYR89_00810 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NYR89_00815 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NYR89_05645 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYR89_09520 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYR89_07870 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYR89_09770 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_04205 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_10820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_10805 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_10795 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_09505 tRNA-His K14226 tRNA-His; tRNA His
D NYR89_06645 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NYR89_10535 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NYR89_08930 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NYR89_10800 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_03995 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_00805 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_02565 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_10810 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_10815 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_08100 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYR89_08105 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYR89_08110 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYR89_02790 tRNA-Ile K14230 tRNA-Met; tRNA Met
D NYR89_00800 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYR89_03495 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYR89_02575 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYR89_09410 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D NYR89_09420 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D NYR89_04950 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NYR89_09510 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NYR89_07235 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_07240 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_01970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_07795 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_09760 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NYR89_09775 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NYR89_09790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NYR89_09545 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D NYR89_09765 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D NYR89_00385 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_00380 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_00390 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_00375 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_04145 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_08465 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D NYR89_03730 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NYR89_03580 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NYR89_00925 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYR89_08195 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NYR89_01865 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NYR89_04725 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NYR89_02475 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NYR89_02335 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NYR89_09190 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NYR89_06245 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NYR89_03390 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NYR89_07605 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:aart03060]
D NYR89_08300 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYR89_08675 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYR89_04000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYR89_01835 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D NYR89_01825 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYR89_09990 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYR89_05425 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYR89_10210 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYR89_02530 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D NYR89_07210 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D NYR89_07205 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D NYR89_07200 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D NYR89_04230 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NYR89_09725 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:aart04122]
D NYR89_02410 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYR89_06560 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NYR89_08905 tusB; sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D NYR89_08900 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D NYR89_08895 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D NYR89_05530 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D NYR89_03805 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D NYR89_03790 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D NYR89_03800 moaD; molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D NYR89_10910 rhodanese-like domain-containing protein K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11]
D NYR89_02100 moeB; molybdopterin-synthase adenylyltransferase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D NYR89_09735 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D NYR89_01750 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:aart03018]
D NYR89_07630 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D NYR89_04200 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D NYR89_10330 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NYR89_03085 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NYR89_01535 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NYR89_05690 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NYR89_09595 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYR89_07350 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYR89_00945 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:aart03030]
D NYR89_00320 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYR89_08125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYR89_04750 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYR89_07090 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D NYR89_10190 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYR89_03915 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NYR89_10310 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D NYR89_04105 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYR89_02745 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NYR89_06290 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NYR89_04350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYR89_00235 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:aart03410]
D NYR89_02670 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NYR89_05115 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D NYR89_09395 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NYR89_07185 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NYR89_07695 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D NYR89_05255 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NYR89_05135 nfo; deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D NYR89_04350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYR89_04460 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYR89_00235 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:aart03420]
D NYR89_04100 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D NYR89_04350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYR89_00235 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:aart03430]
D NYR89_01565 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D NYR89_03675 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D NYR89_02570 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NYR89_02515 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D NYR89_04460 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYR89_04105 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYR89_04750 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYR89_08125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYR89_00320 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYR89_10190 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYR89_07090 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D NYR89_00235 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NYR89_01320 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:aart03440]
D NYR89_04460 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYR89_04105 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYR89_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D NYR89_04215 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D NYR89_06445 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D NYR89_00770 recA; recombinase RecA K03553 recA; recombination protein RecA
D NYR89_04350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYR89_05475 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D NYR89_05470 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NYR89_08710 putative DNA binding domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NYR89_07565 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D NYR89_04750 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYR89_08125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYR89_00320 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYR89_10190 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYR89_07090 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D NYR89_06220 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D NYR89_03560 primosomal replication protein K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:aart02010]
D NYR89_10590 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NYR89_10595 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D NYR89_10605 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NYR89_05585 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D NYR89_10375 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D NYR89_10370 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D NYR89_10365 fbpC; ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D NYR89_00935 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein
D NYR89_06945 thiP; thiamine/thiamine pyrophosphate ABC transporter permease ThiP K02063 thiP; thiamine transport system permease protein
D NYR89_06940 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D NYR89_05480 potC; spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein
D NYR89_05485 potB; spermidine/putrescine ABC transporter permease PotB K11071 potB; spermidine/putrescine transport system permease protein
D NYR89_05490 potA; spermidine/putrescine ABC transporter ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D NYR89_06030 malE; maltose/maltodextrin ABC transporter substrate-binding protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D NYR89_06035 malK; maltose/maltodextrin ABC transporter ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D NYR89_00295 mlaC; phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D NYR89_00290 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NYR89_00285 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NYR89_00280 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NYR89_09065 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D NYR89_08480 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D NYR89_09060 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D NYR89_08485 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D NYR89_09055 rbsA; ribose ABC transporter ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D NYR89_09050 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D NYR89_04395 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D NYR89_09955 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D NYR89_09945 mglC; galactose/methyl galactoside ABC transporter permease MglC K10541 mglC; methyl-galactoside transport system permease protein
D NYR89_09950 mglA; galactose/methyl galactoside ABC transporter ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D NYR89_09580 xylF; D-xylose ABC transporter substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D NYR89_09570 gguB; sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein
D NYR89_09575 xylG; D-xylose ABC transporter ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D NYR89_00475 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D NYR89_00485 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NYR89_10675 transporter substrate-binding domain-containing protein K09997 artI; arginine transport system substrate-binding protein
D NYR89_10665 artM; arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein
D NYR89_10670 artQ; arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein
D NYR89_10680 artP; arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D NYR89_09000 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D NYR89_09365 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D NYR89_09370 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D NYR89_02490 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D NYR89_02495 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D NYR89_04650 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06495 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06500 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_07070 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06485 ABC transporter permease subunit K12370 dppC; dipeptide transport system permease protein
D NYR89_06475 ABC transporter ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D NYR89_02925 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D NYR89_02930 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein
D NYR89_02935 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein
D NYR89_02940 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein
D NYR89_05960 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein
D NYR89_03890 nikA; nickel ABC transporter substrate-binding protein K15584 nikA; nickel transport system substrate-binding protein
D NYR89_03885 ABC transporter permease subunit K15585 nikB; nickel transport system permease protein
D NYR89_03880 ABC transporter permease subunit K15586 nikC; nickel transport system permease protein
D NYR89_07050 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D NYR89_07045 fhuB; Fe(3+)-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D NYR89_02835 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein
D NYR89_04475 znuC; zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D NYR89_06295 metal ABC transporter permease K11605 sitC; manganese/iron transport system permease protein
D NYR89_06300 metal ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D NYR89_05540 ATP-binding cassette domain-containing protein K11607 sitB; manganese/iron transport system ATP-binding protein
D NYR89_09205 ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein
D NYR89_09200 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D NYR89_10860 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D NYR89_10870 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D NYR89_07810 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D NYR89_07815 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D NYR89_07820 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D NYR89_07825 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D NYR89_01595 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D NYR89_01590 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D NYR89_02250 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NYR89_00130 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D NYR89_00135 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D NYR89_04530 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D NYR89_04535 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D NYR89_03465 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D NYR89_04020 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:aart02060]
D NYR89_06950 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D NYR89_06960 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D NYR89_06935 sucrose-specific PTS transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D NYR89_09025 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D NYR89_10400 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D NYR89_09015 manZ; PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_10395 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_00715 srlB; PTS glucitol/sorbitol transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D NYR89_09105 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D NYR89_09255 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D NYR89_08685 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D NYR89_09110 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D NYR89_08690 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D NYR89_02290 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D NYR89_02245 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:aart03070]
D NYR89_01835 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D NYR89_08675 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYR89_04000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYR89_08300 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYR89_01825 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYR89_09990 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYR89_05425 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYR89_10210 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYR89_07210 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D NYR89_07205 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D NYR89_07200 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:aart02020]
D NYR89_00495 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NYR89_00490 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NYR89_03280 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D NYR89_03470 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D NYR89_03475 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D NYR89_01815 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYR89_01810 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D NYR89_08200 pentahemic C cytochrome K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D NYR89_08210 torD; molecular chaperone TorD K03533 torD; TorA specific chaperone
D NYR89_02390 ATP-binding protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D NYR89_07000 arcA; two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D NYR89_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NYR89_04305 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D NYR89_04300 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D NYR89_04290 citF; citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D NYR89_04285 citG; triphosphoribosyl-dephospho-CoA synthase CitG K13927 citXG; holo-ACP synthase / triphosphoribosyl-dephospho-CoA synthase [EC:2.7.7.61 2.4.2.52]
D NYR89_06920 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D NYR89_04445 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D NYR89_06670 response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D NYR89_09675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NYR89_09680 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D NYR89_09685 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D NYR89_01655 uhpC; MFS transporter family glucose-6-phosphate receptor UhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D NYR89_01650 uhpB; signal transduction histidine-protein kinase/phosphatase UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D NYR89_01645 response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D NYR89_03575 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D NYR89_03325 glnD; bifunctional uridylyltransferase/uridylyl-removing protein GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D NYR89_09730 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D NYR89_07450 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYR89_07330 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NYR89_09215 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NYR89_09450 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NYR89_09455 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:aart02024]
D NYR89_06130 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D NYR89_07350 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYR89_00860 anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NYR89_00855 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NYR89_01405 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NYR89_03435 aroG; 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NYR89_01815 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYR89_01810 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D NYR89_04865 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NYR89_07330 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NYR89_02430 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D NYR89_09975 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D NYR89_09980 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D NYR89_02030 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NYR89_04615 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NYR89_06815 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NYR89_04620 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D NYR89_06820 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D NYR89_04625 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D NYR89_06825 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D NYR89_03875 ATP-binding cassette domain-containing protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D NYR89_04630 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D NYR89_09990 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYR89_08675 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYR89_04000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYR89_08300 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYR89_01825 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYR89_05425 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYR89_10210 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:aart02030]
D NYR89_06030 malE; maltose/maltodextrin ABC transporter substrate-binding protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D NYR89_09065 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D NYR89_04395 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D NYR89_09955 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D NYR89_04650 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06495 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06500 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_07070 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:aart02040]
D NYR89_09000 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D NYR89_10315 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:aart01501]
D NYR89_00245 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NYR89_01555 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NYR89_03155 TetR/AcrR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D NYR89_03160 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYR89_09295 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NYR89_06900 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:aart01502]
D NYR89_06860 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYR89_05660 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NYR89_06890 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:aart01503]
D NYR89_05985 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D NYR89_02925 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D NYR89_02930 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein
D NYR89_02935 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein
D NYR89_02940 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein
D NYR89_05960 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein
D NYR89_03470 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D NYR89_03475 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D NYR89_01435 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NYR89_03160 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYR89_04815 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:aart01000]
C 01001 Protein kinases [BR:aart01001]
D NYR89_05065 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYR89_08755 HipA N-terminal domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYR89_08760 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYR89_00495 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NYR89_03470 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D NYR89_01815 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYR89_02390 ATP-binding protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D NYR89_05980 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D NYR89_04445 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D NYR89_01650 uhpB; signal transduction histidine-protein kinase/phosphatase UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:aart01009]
D NYR89_05890 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NYR89_06070 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:aart01002]
D NYR89_09725 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D NYR89_02715 prepilin peptidase K02506 hofD; leader peptidase HopD [EC:3.4.23.43]
D NYR89_05130 NlpC/P60 family protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D NYR89_03400 NlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC
D NYR89_03695 filamentous hemagglutinin N-terminal domain-containing protein K26083 ibpA; protein adenylyltransferase / cysteine protease [EC:2.7.7.108 3.4.22.-]
D NYR89_00105 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D NYR89_05925 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D NYR89_07410 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D NYR89_00900 insulinase family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D NYR89_01615 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NYR89_07690 M20/M25/M40 family metallo-hydrolase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D NYR89_07515 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D NYR89_04470 mepM; murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D NYR89_06695 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D NYR89_03625 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D NYR89_03310 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NYR89_05865 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D NYR89_04790 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D NYR89_03275 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D NYR89_09280 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYR89_02730 serine hydrolase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D NYR89_00340 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D NYR89_05005 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D NYR89_07595 AAA family ATPase K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D NYR89_01570 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D NYR89_04230 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NYR89_00435 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D NYR89_00030 sohB; protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D NYR89_04735 pepE; dipeptidase PepE K05995 pepE; dipeptidase E [EC:3.4.13.21]
D NYR89_09380 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D NYR89_01465 yegQ; tRNA 5-hydroxyuridine modification protein YegQ K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D NYR89_01740 hflC; protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D NYR89_01735 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:aart01003]
D NYR89_02320 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D NYR89_08075 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D NYR89_09495 rffM; lipopolysaccharide N-acetylmannosaminouronosyltransferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D NYR89_09485 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D NYR89_09440 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:aart01005]
D NYR89_04815 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D NYR89_00035 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D NYR89_06840 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D NYR89_04805 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D NYR89_08145 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D NYR89_04930 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D NYR89_00700 lpxM; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D NYR89_01455 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D NYR89_05985 phosphoethanolamine--lipid A transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D NYR89_02595 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D NYR89_09230 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NYR89_10880 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D NYR89_06595 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NYR89_09235 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NYR89_07010 HAD-IIIA family hydrolase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D NYR89_00740 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYR89_04915 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYR89_09240 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D NYR89_10035 rfaC; lipopolysaccharide heptosyltransferase RfaC K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D NYR89_04755 glycosyltransferase family 2 protein K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D NYR89_10030 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D NYR89_01460 O-antigen ligase family protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D NYR89_01410 glycosyltransferase family 9 protein K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D NYR89_02915 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D NYR89_04600 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D NYR89_04840 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D NYR89_08715 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D NYR89_09490 wzyE; ECA oligosaccharide polymerase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D NYR89_10235 Wzz/FepE/Etk N-terminal domain-containing protein K05789 wzzB; chain length determinant protein (polysaccharide antigen chain regulator)
D NYR89_09440 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:aart01011]
D NYR89_06865 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NYR89_06895 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NYR89_06860 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NYR89_05660 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NYR89_08435 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D NYR89_08075 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D NYR89_09295 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NYR89_06900 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYR89_09280 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NYR89_02730 serine hydrolase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D NYR89_03275 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D NYR89_05130 NlpC/P60 family protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D NYR89_04470 mepM; murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D NYR89_02580 mltA; murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D NYR89_09405 mltC; membrane-bound lytic murein transglycosylase MltC K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D NYR89_07780 mltF; membrane-bound lytic murein transglycosylase MltF K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D NYR89_08115 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D NYR89_09285 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D NYR89_01435 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NYR89_02130 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:aart01004]
D NYR89_07170 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NYR89_10445 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NYR89_07175 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NYR89_07590 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D NYR89_04810 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NYR89_02950 nitronate monooxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D NYR89_05220 yciA; acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D NYR89_04865 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NYR89_00110 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NYR89_09805 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:aart01006]
D NYR89_02510 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D NYR89_07160 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D NYR89_04510 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:aart01007]
D NYR89_03730 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NYR89_07605 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NYR89_02475 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NYR89_02335 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NYR89_00925 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYR89_06245 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NYR89_08195 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NYR89_04725 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NYR89_01865 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NYR89_03580 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NYR89_03390 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NYR89_03620 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D NYR89_05845 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D NYR89_03840 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_06745 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NYR89_02360 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NYR89_07270 diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D NYR89_02355 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NYR89_06455 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NYR89_03845 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NYR89_09465 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:aart00194]
D NYR89_08950 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NYR89_08955 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NYR89_08970 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NYR89_08975 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NYR89_08980 ATP synthase subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:aart03000]
D NYR89_00650 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYR89_06280 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D NYR89_00885 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D NYR89_10345 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NYR89_06270 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D NYR89_01795 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D NYR89_03825 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D NYR89_04515 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D NYR89_00735 DNA-binding transcriptional repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D NYR89_09120 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D NYR89_09250 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D NYR89_09045 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR89_09630 DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NYR89_06765 LacI family DNA-binding transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D NYR89_02560 purR; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D NYR89_09040 gntR; gluconate operon transcriptional repressor GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D NYR89_03130 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D NYR89_05775 FCD domain-containing protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D NYR89_03065 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D NYR89_03155 TetR/AcrR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D NYR89_07320 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D NYR89_07895 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D NYR89_06050 malT; HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D NYR89_00465 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NYR89_01110 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NYR89_06120 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NYR89_07330 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NYR89_03590 FNR family transcription factor K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D NYR89_02405 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D NYR89_01670 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D NYR89_10620 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NYR89_01430 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYR89_04330 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D NYR89_06990 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D NYR89_00525 helix-turn-helix domain-containing protein K02647 cdaR; carbohydrate diacid regulator
D NYR89_07430 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D NYR89_01965 BolA/IbaG family iron-sulfur metabolism protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D NYR89_00265 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D NYR89_03410 ROK family protein K15545 mlc; transcriptional regulator of PTS gene
D NYR89_08835 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor
D NYR89_02920 sigma 54-interacting transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D NYR89_04845 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NYR89_01950 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D NYR89_00940 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NYR89_03905 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D NYR89_06915 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:aart03021]
D NYR89_08275 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYR89_08060 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NYR89_10315 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D NYR89_04880 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NYR89_07930 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NYR89_07915 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D NYR89_02120 rapA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D NYR89_01365 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D NYR89_08670 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D NYR89_03600 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D NYR89_03595 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D NYR89_04875 RseA family anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA
D NYR89_00940 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NYR89_04920 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D NYR89_05690 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:aart03019]
D NYR89_02900 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NYR89_04225 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NYR89_10330 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NYR89_01445 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D NYR89_04200 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D NYR89_03085 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NYR89_01535 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NYR89_05690 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D NYR89_01495 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D NYR89_09595 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYR89_07350 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYR89_00945 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D NYR89_07630 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D NYR89_03575 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D NYR89_07650 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A
D NYR89_06555 rraB; ribonuclease E inhibitor RraB K09893 rraB; regulator of ribonuclease activity B
D NYR89_02240 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:aart03011]
D NYR89_08380 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D NYR89_08280 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D NYR89_08315 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NYR89_10045 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NYR89_08330 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NYR89_03340 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NYR89_08415 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NYR89_08285 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NYR89_10040 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NYR89_08290 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NYR89_08335 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NYR89_02005 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NYR89_08265 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NYR89_08365 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NYR89_06215 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D NYR89_08390 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NYR89_10305 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NYR89_08660 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NYR89_08395 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NYR89_08410 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NYR89_08405 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D NYR89_08340 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NYR89_08325 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NYR89_03335 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NYR89_08350 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D NYR89_08305 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NYR89_08270 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NYR89_08250 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NYR89_07135 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NYR89_08385 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D NYR89_08400 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D NYR89_07130 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NYR89_07280 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NYR89_08370 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NYR89_08310 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NYR89_02050 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NYR89_08085 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NYR89_10435 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D NYR89_07275 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NYR89_07435 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D NYR89_01885 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D NYR89_08080 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D NYR89_08295 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D NYR89_04275 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D NYR89_09535 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_09530 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_05635 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_06630 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_07860 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_08915 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_10550 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_08935 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_05650 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_10530 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_09515 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_07875 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_06650 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_06635 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_05640 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_08920 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_07865 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_10545 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_09525 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:aart03009]
D NYR89_04225 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NYR89_01445 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D NYR89_04220 era; GTPase Era K03595 era; GTPase
D NYR89_07370 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D NYR89_00940 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NYR89_01365 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D NYR89_08670 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D NYR89_05155 rsuA; 16S rRNA pseudouridine(516) synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NYR89_04855 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NYR89_08450 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NYR89_07095 rsmC; 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D NYR89_00145 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NYR89_01955 rsmE; 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NYR89_08985 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NYR89_06910 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NYR89_07525 class I SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D NYR89_06970 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NYR89_09300 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D NYR89_02135 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D NYR89_06665 rlmKL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D NYR89_03765 rlmM; 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D NYR89_00395 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NYR89_01550 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D NYR89_01935 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NYR89_02125 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NYR89_00875 rluB; 23S rRNA pseudouridine(2605) synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NYR89_07490 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D NYR89_01505 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NYR89_06580 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D NYR89_07085 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D NYR89_04315 RimK family alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D NYR89_08260 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D NYR89_08870 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D NYR89_02845 ycaO; 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D NYR89_09605 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D NYR89_02350 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D NYR89_08245 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D NYR89_02900 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NYR89_03085 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D NYR89_07080 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D NYR89_06285 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D NYR89_04835 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D NYR89_07345 hflX; GTPase HflX K03665 hflX; GTPase
D NYR89_00790 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NYR89_08065 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NYR89_03515 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D NYR89_03500 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D NYR89_09305 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D NYR89_03810 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D NYR89_04760 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D NYR89_03210 ribosome-associated protein K09889 yjgA; ribosome-associated protein
D NYR89_04925 raiA; ribosome-associated translation inhibitor RaiA K05809 raiA; ribosome-associated inhibitor A
D NYR89_06790 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D NYR89_10430 yceD; 23S rRNA accumulation protein YceD K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:aart03016]
D NYR89_02465 multifunctional CCA addition/repair protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D NYR89_02335 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NYR89_03730 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NYR89_00925 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYR89_03580 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NYR89_01865 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NYR89_04725 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NYR89_02475 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NYR89_06245 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NYR89_03390 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NYR89_07605 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NYR89_06305 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NYR89_10450 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D NYR89_10060 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D NYR89_03520 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D NYR89_07730 truD; tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D NYR89_02410 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYR89_00790 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NYR89_09815 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NYR89_08990 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NYR89_02205 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D NYR89_00185 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D NYR89_07440 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D NYR89_04270 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D NYR89_00975 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D NYR89_06690 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D NYR89_04125 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D NYR89_00315 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D NYR89_08195 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NYR89_06105 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D NYR89_05545 YbaK/prolyl-tRNA synthetase associated domain-containing protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D NYR89_03080 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D NYR89_00555 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D NYR89_01425 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D NYR89_05330 dusC; tRNA dihydrouridine(16) synthase DusC K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D NYR89_06965 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D NYR89_02590 cmoB; tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D NYR89_07245 trmA; tRNA (uridine(54)-C5)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D NYR89_04590 trmJ; tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D NYR89_06660 trmL; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D NYR89_07645 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D NYR89_04695 truC; tRNA pseudouridine(65) synthase TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D NYR89_01935 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NYR89_02125 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NYR89_05240 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D NYR89_06560 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NYR89_08905 tusB; sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D NYR89_08900 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D NYR89_08895 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D NYR89_05530 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D NYR89_02420 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D NYR89_06680 folate-binding protein K06980 ygfZ; tRNA-modifying protein YgfZ
D NYR89_04675 mnmC; bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D NYR89_04170 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D NYR89_01625 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NYR89_01620 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NYR89_04595 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NYR89_07165 epoxyqueuosine reductase QueH K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D NYR89_03035 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D NYR89_01750 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D NYR89_09560 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D NYR89_03440 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D NYR89_01515 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D NYR89_01440 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D NYR89_05445 tcdA; tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D NYR89_10330 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NYR89_03635 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:aart03012]
D NYR89_03955 yciH; stress response translation initiation inhibitor YciH K03113 EIF1; translation initiation factor 1
D NYR89_01875 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D NYR89_02085 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D NYR89_10050 fusA; elongation factor G K02355 fusA; elongation factor G
D NYR89_08455 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D NYR89_10905 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D NYR89_03060 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D NYR89_06080 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D NYR89_03715 efp; elongation factor P K02356 efp; elongation factor P
D NYR89_09665 epmA; elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D NYR89_03705 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D NYR89_10710 elongation factor P hydroxylase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D NYR89_04150 ribosome alternative rescue factor ArfA K09890 arfA; alternative ribosome-rescue factor
C 03110 Chaperones and folding catalysts [BR:aart03110]
D NYR89_01685 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D NYR89_00345 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D NYR89_09595 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYR89_05340 djlA; co-chaperone DjlA K05801 djlA; DnaJ like chaperone protein
D NYR89_00165 hslO; Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33
D NYR89_05095 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D NYR89_00170 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D NYR89_05410 co-chaperone GroES K04078 groES; chaperonin GroES
D NYR89_03310 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NYR89_08975 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NYR89_10210 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYR89_08210 torD; molecular chaperone TorD K03533 torD; TorA specific chaperone
D NYR89_09090 dmsD; Tat proofreading chaperone DmsD K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D NYR89_02470 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D NYR89_02015 ppiD; peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D NYR89_08885 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D NYR89_09345 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D NYR89_10080 slyD; peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D NYR89_04850 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D NYR89_01730 trxA; thioredoxin K03671 TXN; thioredoxin
D NYR89_06415 co-chaperone YbbN K05838 ybbN; putative thioredoxin
D NYR89_07025 GrxA family glutaredoxin K03674 grxA; glutaredoxin 1
D NYR89_06450 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D NYR89_02075 dsbB; disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D NYR89_04465 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D NYR89_01020 redoxin family protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D NYR89_09750 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:aart04131]
D NYR89_02330 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NYR89_02810 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NYR89_04560 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NYR89_01415 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:aart03032]
D NYR89_02745 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NYR89_00650 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYR89_06365 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D NYR89_03395 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D NYR89_03975 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D NYR89_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NYR89_03915 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NYR89_10310 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D NYR89_04105 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYR89_10190 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYR89_04750 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYR89_08125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYR89_00320 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYR89_07090 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D NYR89_06290 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NYR89_04350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYR89_00235 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NYR89_01320 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D NYR89_03235 seqA; replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication
D NYR89_07830 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D NYR89_05460 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NYR89_04505 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NYR89_00500 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D NYR89_03820 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:aart03036]
D NYR89_00650 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYR89_04225 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NYR89_04405 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D NYR89_06365 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D NYR89_03395 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D NYR89_03975 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D NYR89_00005 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D NYR89_09835 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D NYR89_01430 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYR89_07350 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D NYR89_03110 mukE; chromosome partition protein MukE K03804 mukE; chromosome partition protein MukE
D NYR89_03105 mukF; chromosome partition protein MukF K03633 mukF; chromosome partition protein MukF
D NYR89_02545 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D NYR89_00135 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D NYR89_06900 penicillin-binding transpeptidase domain-containing protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NYR89_03425 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D NYR89_07530 SPOR domain-containing protein K03591 ftsN; cell division protein FtsN
D NYR89_06855 cell division protein FtsQ/DivIB K03589 ftsQ; cell division protein FtsQ
D NYR89_06875 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D NYR89_00130 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D NYR89_02190 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYR89_06385 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA
D NYR89_03450 zapB; cell division protein ZapB K09892 zapB; cell division protein ZapB
D NYR89_01435 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NYR89_03160 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYR89_07320 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D NYR89_03235 seqA; replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication
D NYR89_02820 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D NYR89_02825 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D NYR89_09290 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D NYR89_00500 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D NYR89_08990 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NYR89_08985 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NYR89_08160 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D NYR89_09550 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D NYR89_02035 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NYR89_04685 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D NYR89_10120 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D NYR89_10885 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D NYR89_06550 yihA; ribosome biogenesis GTP-binding protein YihA/YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:aart03400]
D NYR89_02395 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NYR89_05115 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D NYR89_09395 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NYR89_02670 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NYR89_05415 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NYR89_07315 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NYR89_07695 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D NYR89_07185 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NYR89_05255 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NYR89_05135 nfo; deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D NYR89_04460 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NYR89_00235 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NYR89_04350 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NYR89_04100 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D NYR89_08275 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NYR89_08060 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NYR89_01565 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D NYR89_03675 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D NYR89_02570 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NYR89_02515 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D NYR89_10190 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NYR89_04750 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NYR89_08125 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NYR89_00320 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NYR89_07090 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D NYR89_04105 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYR89_01320 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D NYR89_07565 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D NYR89_00770 recA; recombinase RecA K03553 recA; recombination protein RecA
D NYR89_05475 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D NYR89_05470 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NYR89_06220 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D NYR89_03560 primosomal replication protein K04067 priC; primosomal replication protein N''
D NYR89_02695 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D NYR89_00015 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D NYR89_08710 putative DNA binding domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NYR89_04215 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D NYR89_06445 recR; recombination mediator RecR K06187 recR; recombination protein RecR
D NYR89_06835 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D NYR89_00635 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D NYR89_02890 cas1c; type I-C CRISPR-associated endonuclease Cas1c K15342 cas1; CRISP-associated protein Cas1
D NYR89_05460 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NYR89_04505 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NYR89_03820 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D NYR89_06365 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D NYR89_01430 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NYR89_03395 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D NYR89_03975 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D NYR89_01535 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NYR89_04405 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D NYR89_05860 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D NYR89_01570 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D NYR89_00775 recX; recombination regulator RecX K03565 recX; regulatory protein
D NYR89_04095 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D NYR89_00565 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NYR89_00560 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NYR89_05280 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:aart03029]
D NYR89_01875 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D NYR89_10050 fusA; elongation factor G K02355 fusA; elongation factor G
D NYR89_04220 era; GTPase Era K03595 era; GTPase
D NYR89_00925 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NYR89_04105 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NYR89_04795 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D NYR89_09595 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYR89_05095 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D NYR89_05410 co-chaperone GroES K04078 groES; chaperonin GroES
D NYR89_02410 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NYR89_06450 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D NYR89_02035 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NYR89_09990 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:aart02000]
D NYR89_04530 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D NYR89_04535 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D NYR89_03465 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D NYR89_04020 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D NYR89_05450 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D NYR89_10590 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NYR89_10595 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D NYR89_10605 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NYR89_05585 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D NYR89_10375 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D NYR89_10370 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D NYR89_10365 fbpC; ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D NYR89_00935 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein
D NYR89_06945 thiP; thiamine/thiamine pyrophosphate ABC transporter permease ThiP K02063 thiP; thiamine transport system permease protein
D NYR89_06940 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D NYR89_05480 potC; spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein
D NYR89_05485 potB; spermidine/putrescine ABC transporter permease PotB K11071 potB; spermidine/putrescine transport system permease protein
D NYR89_05490 potA; spermidine/putrescine ABC transporter ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D NYR89_06030 malE; maltose/maltodextrin ABC transporter substrate-binding protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D NYR89_06035 malK; maltose/maltodextrin ABC transporter ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D NYR89_04395 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D NYR89_09955 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D NYR89_09945 mglC; galactose/methyl galactoside ABC transporter permease MglC K10541 mglC; methyl-galactoside transport system permease protein
D NYR89_09950 mglA; galactose/methyl galactoside ABC transporter ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D NYR89_09580 xylF; D-xylose ABC transporter substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D NYR89_09570 gguB; sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein
D NYR89_09575 xylG; D-xylose ABC transporter ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D NYR89_09065 rbsB; ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D NYR89_08480 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D NYR89_09060 rbsC; ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D NYR89_08485 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D NYR89_09055 rbsA; ribose ABC transporter ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D NYR89_00290 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NYR89_00285 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NYR89_00280 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NYR89_00295 mlaC; phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D NYR89_00475 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D NYR89_00485 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NYR89_10675 transporter substrate-binding domain-containing protein K09997 artI; arginine transport system substrate-binding protein
D NYR89_10665 artM; arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein
D NYR89_10670 artQ; arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein
D NYR89_10680 artP; arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D NYR89_09000 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D NYR89_09365 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D NYR89_09370 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D NYR89_02490 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D NYR89_02495 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D NYR89_09325 cysteine ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D NYR89_09335 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D NYR89_09340 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D NYR89_09330 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D NYR89_04650 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06495 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06500 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_07070 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D NYR89_06485 ABC transporter permease subunit K12370 dppC; dipeptide transport system permease protein
D NYR89_06475 ABC transporter ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D NYR89_02925 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D NYR89_02930 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein
D NYR89_02935 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein
D NYR89_02940 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein
D NYR89_05960 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein
D NYR89_03890 nikA; nickel ABC transporter substrate-binding protein K15584 nikA; nickel transport system substrate-binding protein
D NYR89_03885 ABC transporter permease subunit K15585 nikB; nickel transport system permease protein
D NYR89_03880 ABC transporter permease subunit K15586 nikC; nickel transport system permease protein
D NYR89_02030 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NYR89_04615 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NYR89_06815 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NYR89_04620 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D NYR89_06820 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D NYR89_04625 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D NYR89_06825 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D NYR89_03875 ATP-binding cassette domain-containing protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D NYR89_04630 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D NYR89_07050 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D NYR89_07045 fhuB; Fe(3+)-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D NYR89_03930 iron chelate uptake ABC transporter family permease subunit K25283 yclO; iron-siderophore transport system permease protein
D NYR89_03925 iron chelate uptake ABC transporter family permease subunit K25284 yclN; iron-siderophore transport system permease protein
D NYR89_03935 ATP-binding cassette domain-containing protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D NYR89_08235 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D NYR89_08230 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D NYR89_02835 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein
D NYR89_04475 znuC; zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D NYR89_06295 metal ABC transporter permease K11605 sitC; manganese/iron transport system permease protein
D NYR89_06300 metal ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D NYR89_05540 ATP-binding cassette domain-containing protein K11607 sitB; manganese/iron transport system ATP-binding protein
D NYR89_09205 ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein
D NYR89_09200 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D NYR89_01595 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D NYR89_01590 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D NYR89_02250 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NYR89_10860 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D NYR89_10870 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D NYR89_07810 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D NYR89_07815 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D NYR89_07820 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D NYR89_07825 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D NYR89_00130 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D NYR89_00135 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D NYR89_05580 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D NYR89_05575 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D NYR89_05940 DASS family sodium-coupled anion symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D NYR89_05945 SLC13 family permease K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D NYR89_05085 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D NYR89_09565 xylE; D-xylose transporter XylE K08138 xylE; MFS transporter, SP family, xylose:H+ symportor
D NYR89_05290 MFS transporter K02532 lacY; MFS transporter, OHS family, lactose permease
D NYR89_09145 fucP; L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D NYR89_00625 3-phenylpropionate MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D NYR89_05000 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D NYR89_07910 MFS transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D NYR89_01655 uhpC; MFS transporter family glucose-6-phosphate receptor UhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D NYR89_00245 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NYR89_05150 Bcr/CflA family multidrug efflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D NYR89_03120 sugar transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D NYR89_06950 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D NYR89_06960 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D NYR89_06935 sucrose-specific PTS transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D NYR89_00715 srlB; PTS glucitol/sorbitol transporter subunit IIA K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D NYR89_09025 mannose/fructose/sorbose PTS transporter subunit IIA K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D NYR89_10400 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D NYR89_09015 manZ; PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_10395 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D NYR89_09105 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D NYR89_09255 PTS sugar transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D NYR89_08685 PTS sugar transporter subunit IIB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D NYR89_09110 PTS ascorbate-specific subunit IIBC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D NYR89_08690 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D NYR89_02245 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D NYR89_06615 dhaM; dihydroxyacetone kinase phosphoryl donor subunit DhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D NYR89_10070 aqpZ; aquaporin Z K06188 aqpZ; aquaporin Z
D NYR89_00845 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NYR89_01190 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NYR89_09700 glutathione S-transferase N-terminal domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NYR89_03600 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D NYR89_05525 Bax inhibitor-1 family protein K19416 yccA; modulator of FtsH protease
D NYR89_05875 focA; formate transporter FocA K06212 focA; formate transporter
D NYR89_09165 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D NYR89_03245 mscK; mechanosensitive channel MscK K05802 mscK; potassium-dependent mechanosensitive channel
D NYR89_03250 mscK; mechanosensitive channel MscK K05802 mscK; potassium-dependent mechanosensitive channel
D NYR89_07485 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D NYR89_08815 urea transporter K08717 utp; urea transporter
D NYR89_05370 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D NYR89_05365 tolR; colicin uptake protein TolR K03560 tolR; biopolymer transport protein TolR
D NYR89_07230 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter
D NYR89_09650 CrcB family protein K06199 crcB; fluoride exporter
D NYR89_10655 mercuric transporter MerT family protein K08363 merT; mercuric ion transport protein
D NYR89_10660 heavy-metal-associated domain-containing protein K08364 merP; periplasmic mercuric ion binding protein
D NYR89_01930 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D NYR89_10420 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D NYR89_06040 maltoporin K02024 lamB; maltoporin
D NYR89_09960 ompA; porin OmpA K03286 TC.OOP; OmpA-OmpF porin, OOP family
D NYR89_02400 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein
D NYR89_01050 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D NYR89_01870 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D NYR89_02455 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NYR89_04025 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NYR89_05920 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NYR89_07040 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NYR89_09215 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NYR89_04795 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D NYR89_01510 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D NYR89_02770 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D NYR89_04545 autotransporter assembly complex protein TamA K07278 tamA; translocation and assembly module TamA
D NYR89_02255 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D NYR89_02260 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D NYR89_05175 lptD; LPS assembly protein LptD K04744 lptD; LPS-assembly protein
D NYR89_04745 lptE; LPS assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D NYR89_05040 corC; CNNM family magnesium/cobalt transport protein CorC K06189 corC; hemolysin (HlyC) family protein
D NYR89_04090 CidA/LrgA family protein K06518 cidA; holin-like protein
D NYR89_04130 CidA/LrgA family protein K06518 cidA; holin-like protein
D NYR89_01705 basic amino acid/polyamine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D NYR89_01710 basic amino acid/polyamine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D NYR89_06540 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family
D NYR89_08740 SMR family transporter K03297 emrE; small multidrug resistance pump
D NYR89_07475 EamA family transporter K08978 TC.BAT1; bacterial/archaeal transporter family protein
D NYR89_05835 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D NYR89_05840 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D NYR89_02430 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D NYR89_09975 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D NYR89_09980 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D NYR89_05250 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter
D NYR89_00530 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D NYR89_06920 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D NYR89_04410 L-lactate permease K03303 lutP; lactate permease
D NYR89_06155 tehA; dicarboxylate transporter/tellurite-resistance protein TehA K03304 tehA; tellurite resistance protein
D NYR89_06405 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter
D NYR89_05200 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D NYR89_07480 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D NYR89_02070 nhaB; sodium/proton antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D NYR89_01010 monovalent cation:proton antiporter-2 (CPA2) family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D NYR89_09175 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D NYR89_08445 trkA; Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein
D NYR89_01840 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D NYR89_06095 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D NYR89_03315 aromatic amino acid transporter K03834 tyrP; tyrosine-specific transport protein
D NYR89_09995 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein
D NYR89_03680 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D NYR89_08510 TRAP transporter small permease K21394 yiaM; TRAP-type transport system small permease protein
D NYR89_08500 TRAP transporter substrate-binding protein K21395 yiaO; TRAP-type transport system periplasmic protein
D NYR89_02640 dcuC; C4-dicarboxylate transporter DcuC K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D NYR89_09470 wzxE; lipid III flippase WzxE K16693 wzxE; enterobacterial common antigen flippase
D NYR89_08435 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D NYR89_02150 AEC family transporter K13936 mdcF; malonate transporter and related proteins
D NYR89_02635 AEC family transporter K24180 mleP; malate permease and related proteins
D NYR89_04565 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D NYR89_01380 LysE family transporter K05835 rhtC; threonine efflux protein
D NYR89_05965 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D NYR89_05970 AzlD family protein K26606 azlD; branched chain amino acid efflux pump
D NYR89_04160 AI-2E family transporter K03548 perM; putative permease
D NYR89_06700 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter K09125 yhhQ; queuosine precursor transporter
D NYR89_02020 YchE family NAAT transporter K05595 marC; multiple antibiotic resistance protein
D NYR89_02090 MarC family protein K05595 marC; multiple antibiotic resistance protein
D NYR89_06205 MarC family protein K05595 marC; multiple antibiotic resistance protein
D NYR89_06875 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D NYR89_03650 EfeM/EfeO family lipoprotein K07224 efeO; iron uptake system component EfeO
D NYR89_04260 nickel/cobalt transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D NYR89_06435 TonB family protein K03832 tonB; periplasmic protein TonB
D NYR89_05355 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D NYR89_10480 oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D NYR89_10490 oxaloacetate decarboxylase subunit gamma K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D NYR89_09075 dimethyl sulfoxide reductase subunit A K07309 ynfE; Tat-targeted selenate reductase subunit YnfE [EC:1.97.1.9]
D NYR89_09080 dmsB; dimethylsulfoxide reductase subunit B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D NYR89_09085 dimethyl sulfoxide reductase anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D NYR89_08200 pentahemic C cytochrome K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D NYR89_08210 torD; molecular chaperone TorD K03533 torD; TorA specific chaperone
D NYR89_07735 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system
D NYR89_03160 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYR89_04895 efflux RND transporter periplasmic adaptor subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D NYR89_06235 pnuC; nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
C 02044 Secretion system [BR:aart02044]
D NYR89_07735 HlyD family type I secretion periplasmic adaptor subunit K12542 lapC; membrane fusion protein, adhesin transport system
D NYR89_00400 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D NYR89_07585 type II secretion system GspH family protein K02679 ppdA; prepilin peptidase dependent protein A
D NYR89_07580 hypothetical protein K02680 ppdB; prepilin peptidase dependent protein B
D NYR89_07570 DUF5374 domain-containing protein K02681 ppdC; prepilin peptidase dependent protein C
D NYR89_02700 prepilin-type N-terminal cleavage/methylation domain-containing protein K02682 ppdD; prepilin peptidase dependent protein D
D NYR89_02705 GspE/PulE family protein K02504 hofB; protein transport protein HofB
D NYR89_02710 type II secretion system F family protein K02505 hofC; protein transport protein HofC
D NYR89_01360 pilQ; type IV pilus secretin PilQ K02507 hofQ; protein transport protein HofQ
D NYR89_10460 YggT family protein K02221 yggT; YggT family protein
D NYR89_04465 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D NYR89_05425 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NYR89_10210 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NYR89_08675 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D NYR89_01835 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D NYR89_04000 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D NYR89_08300 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D NYR89_01825 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D NYR89_09990 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NYR89_07210 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D NYR89_07205 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D NYR89_07200 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:aart02042]
D NYR89_01930 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D NYR89_10420 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:aart02022]
D NYR89_00495 phoR; phosphate regulon sensor histidine kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NYR89_00490 phoB; phosphate regulon transcriptional regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NYR89_03470 cpxA; envelope stress sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D NYR89_03475 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D NYR89_01815 ATP-binding protein K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D NYR89_01810 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D NYR89_02390 ATP-binding protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D NYR89_07000 arcA; two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D NYR89_05980 ATP-binding protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D NYR89_05975 response regulator K02483 K02483; two-component system, OmpR family, response regulator
D NYR89_04445 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D NYR89_06670 response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D NYR89_01650 uhpB; signal transduction histidine-protein kinase/phosphatase UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D NYR89_01645 response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
C 02035 Bacterial motility proteins [BR:aart02035]
D NYR89_09000 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D NYR89_00400 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:aart04812]
D NYR89_02190 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
C 04147 Exosome [BR:aart04147]
D NYR89_02810 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NYR89_01415 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NYR89_09595 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D NYR89_00825 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NYR89_03300 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NYR89_06305 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NYR89_04865 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NYR89_05890 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NYR89_00255 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NYR89_05565 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NYR89_10355 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NYR89_05305 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D NYR89_02305 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NYR89_07450 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NYR89_07195 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NYR89_03280 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D NYR89_05170 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NYR89_00190 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NYR89_07770 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NYR89_04560 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:aart02048]
D NYR89_02890 cas1c; type I-C CRISPR-associated endonuclease Cas1c K15342 cas1; CRISP-associated protein Cas1
D NYR89_02895 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D NYR89_02850 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D NYR89_02875 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D NYR89_02865 cas8c; type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1
D NYR89_02870 cas7c; type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2
D NYR89_02860 cas5c; type I-C CRISPR-associated protein Cas5c K19119 cas5d; CRISPR-associated protein Cas5d
D NYR89_01320 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D NYR89_00070 DNA adenine methylase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D NYR89_04360 SAM-dependent methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D NYR89_00650 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D NYR89_05065 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYR89_08755 HipA N-terminal domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYR89_08760 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NYR89_08130 type II toxin-antitoxin system ParD family antitoxin K07746 parD1_3_4; antitoxin ParD1/3/4
D NYR89_03635 type II toxin-antitoxin system VapC family toxin K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NYR89_03640 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18829 mvpT; antitoxin VapB
D NYR89_00415 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-]
D NYR89_06185 type II toxin-antitoxin system VapC family toxin K07062 fitB; toxin FitB [EC:3.1.-.-]
D NYR89_02190 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D NYR89_00500 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D NYR89_02410 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:aart04052]
D NYR89_03550 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:aart01504]
D NYR89_03160 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D NYR89_00465 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NYR89_01110 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NYR89_01795 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D NYR89_03825 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:aart00537]
D NYR89_03280 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:aart03100]
D NYR89_00360 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_06640 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_10540 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_08925 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D NYR89_09500 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_07785 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_04955 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_07790 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D NYR89_02105 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NYR89_09425 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NYR89_09415 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D NYR89_00325 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NYR89_00330 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NYR89_09540 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D NYR89_04210 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D NYR89_00810 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NYR89_00815 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D NYR89_05645 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYR89_09520 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYR89_07870 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D NYR89_09770 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_04205 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_10820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_10805 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_10795 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D NYR89_09505 tRNA-His K14226 tRNA-His; tRNA His
D NYR89_06645 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NYR89_10535 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NYR89_08930 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D NYR89_10800 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_03995 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_00805 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_02565 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_10810 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_10815 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D NYR89_08100 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYR89_08105 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYR89_08110 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D NYR89_02790 tRNA-Ile K14230 tRNA-Met; tRNA Met
D NYR89_00800 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYR89_03495 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYR89_02575 tRNA-Met K14230 tRNA-Met; tRNA Met
D NYR89_09410 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D NYR89_09420 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D NYR89_04950 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NYR89_09510 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D NYR89_07235 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_07240 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_01970 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_07795 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D NYR89_09760 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NYR89_09775 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NYR89_09790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D NYR89_09545 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D NYR89_09765 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D NYR89_00385 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_00380 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_00390 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_00375 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_04145 tRNA-Val K14237 tRNA-Val; tRNA Val
D NYR89_08465 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D NYR89_08935 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_05650 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_10530 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_09515 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_07875 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_06650 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D NYR89_06635 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_05640 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_08920 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_07865 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_10545 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_09525 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D NYR89_09535 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_09530 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_05635 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_06630 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_07860 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_08915 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_10550 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D NYR89_02530 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D NYR89_04270 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D NYR89_07905 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D NYR89_07850 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D NYR89_05790 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D NYR89_02805 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D NYR89_06190 yghU; glutathione-dependent disulfide-bond oxidoreductase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D NYR89_07925 msrP; protein-methionine-sulfoxide reductase catalytic subunit MsrP K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D NYR89_10470 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D NYR89_04605 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D NYR89_09810 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D NYR89_01140 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D NYR89_00865 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D NYR89_09830 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D NYR89_01675 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D NYR89_00660 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D NYR89_05055 radical SAM protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D NYR89_05915 pflA; pyruvate formate lyase 1-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D NYR89_09475 hcr; NADH oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D NYR89_00160 tehB; SAM-dependent methyltransferase TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D NYR89_05045 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D NYR89_07620 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D NYR89_07840 four-carbon acid sugar kinase family protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D NYR89_05375 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D NYR89_03665 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D NYR89_01420 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D NYR89_05510 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D NYR89_06005 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D NYR89_08135 YchF/TatD family DNA exonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D NYR89_01485 thermonuclease family protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D NYR89_03230 alpha/beta fold hydrolase K01175 ybfF; esterase [EC:3.1.-.-]
D NYR89_08705 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D NYR89_00780 yqfB; N(4)-acetylcytidine aminohydrolase K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D NYR89_05555 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D NYR89_04710 CYTH domain-containing protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D NYR89_08525 alpha/beta hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D NYR89_01490 cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D NYR89_10360 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D NYR89_10520 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D NYR89_00685 rsxD; electron transport complex subunit RsxD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D NYR89_00670 rsxB; electron transport complex subunit RsxB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D NYR89_00585 NADH:ubiquinone reductase (Na(+)-transporting) subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D NYR89_00595 NADH:ubiquinone reductase (Na(+)-transporting) subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D NYR89_00600 nqrE; NADH:ubiquinone reductase (Na(+)-transporting) subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D NYR89_00605 nqrF; NADH:ubiquinone reductase (Na(+)-transporting) subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
C 99981 Carbohydrate metabolism
D NYR89_09385 sfsA; DNA/RNA nuclease SfsA K06206 sfsA; sugar fermentation stimulation protein A
D NYR89_04415 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D NYR89_04420 LutB/LldF family L-lactate oxidation iron-sulfur protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D NYR89_04425 lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D NYR89_00690 rsxG; electron transport complex subunit RsxG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D NYR89_00695 electron transport complex subunit E K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D NYR89_00665 rsxA; electron transport complex subunit RsxA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D NYR89_08470 mioC; FMN-binding protein MioC K06205 mioC; MioC protein
D NYR89_02415 iscU; Fe-S cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D NYR89_01470 cytochrome b562 K15536 cybC; soluble cytochrome b562
D NYR89_09880 chaperone NapD K02570 napD; periplasmic nitrate reductase NapD
D NYR89_09875 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D NYR89_01025 nrfF; heme lyase NrfEFG subunit NrfF K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF
D NYR89_06115 fldA; flavodoxin FldA K03839 fldA; flavodoxin I
D NYR89_09905 cytochrome c3 family protein K02569 napC; cytochrome c-type protein NapC
D NYR89_09890 napG; ferredoxin-type protein NapG K02573 napG; ferredoxin-type protein NapG
D NYR89_09895 napH; quinol dehydrogenase ferredoxin subunit NapH K02574 napH; ferredoxin-type protein NapH
D NYR89_06515 nrfB; cytochrome c nitrite reductase pentaheme subunit K04013 nrfB; cytochrome c-type protein NrfB
D NYR89_06505 nrfD; cytochrome c nitrite reductase subunit NrfD K04015 nrfD; protein NrfD
D NYR89_01275 FAD-dependent oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D NYR89_00225 cysZ; sulfate transporter CysZ K06203 cysZ; CysZ protein
D NYR89_09390 VOC family protein K08234 yaeR; glyoxylase I family protein
D NYR89_07015 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D NYR89_09360 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K26607 cyuA; putative L-cysteine desulfidase
C 99986 Glycan metabolism
D NYR89_03970 LapA family protein K08992 lapA; lipopolysaccharide assembly protein A
D NYR89_03965 lapB; lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B
D NYR89_05715 glycosyltransferase family 25 protein K07270 K07270; glycosyl transferase, family 25
D NYR89_05810 glycosyltransferase family 25 protein K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D NYR89_01995 heme biosynthesis protein HemY K02498 hemY; HemY protein
D NYR89_07220 SCP2 sterol-binding domain-containing protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D NYR89_00820 accessory factor UbiK family protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
D NYR89_09800 multicopper oxidase domain-containing protein K04753 sufI; suppressor of ftsI
D NYR89_07145 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D NYR89_01210 alpha/beta hydrolase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D NYR89_00725 gutM; transcriptional regulator GutM K02466 gutM; glucitol operon activator protein
D NYR89_03020 cspD; cold shock domain-containing protein CspD K03704 cspA; cold shock protein
D NYR89_06345 cold-shock protein K03704 cspA; cold shock protein
D NYR89_00405 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D NYR89_10200 tig; trigger factor K03545 tig; trigger factor
D NYR89_07920 sulfoxide reductase heme-binding subunit YedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D NYR89_02610 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D NYR89_08790 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D NYR89_08785 urease accessory protein UreF K03188 ureF; urease accessory protein
D NYR89_08780 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D NYR89_08775 urease accessory protein UreD K03190 ureD; urease accessory protein
D NYR89_04720 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D NYR89_00575 nfuA; Fe-S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D NYR89_00755 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D NYR89_00545 ATP-dependent endonuclease K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D NYR89_08700 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein
D NYR89_02830 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D NYR89_00785 topoisomerase DNA-binding C4 zinc finger domain-containing protein K07479 yrdD; putative DNA topoisomerase
D NYR89_06740 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D NYR89_03945 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D NYR89_01315 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D NYR89_04255 alanine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D NYR89_07180 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D NYR89_04900 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D NYR89_05195 putative transporter K07085 K07085; putative transport protein
C 99978 Cell growth
D NYR89_05225 septation protein A K06190 ispZ; intracellular septation protein
D NYR89_04555 envC; murein hydrolase activator EnvC K22719 envC; murein hydrolase activator
C 99993 Cell motility
D NYR89_08420 TfoX/Sxy family DNA transformation protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D NYR89_03585 universal stress protein K06149 uspA; universal stress protein A
D NYR89_07020 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D NYR89_09825 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D NYR89_02060 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D NYR89_03950 TIGR04211 family SH3 domain-containing protein K07184 ygiM; SH3 domain protein
D NYR89_06075 YtjB family periplasmic protein K07186 smp; membrane protein
D NYR89_06065 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D NYR89_04335 lolA; outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein
D NYR89_04075 lolB; lipoprotein insertase outer membrane protein LolB K02494 lolB; outer membrane lipoprotein LolB
D NYR89_07425 MlaA family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D NYR89_09445 transporter K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D NYR89_03090 nlpI; lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D NYR89_09315 capsule biosynthesis protein K07265 kpsS; capsular polysaccharide export protein
D NYR89_09320 capsular polysaccharide biosynthesis protein K07266 kpsC; capsular polysaccharide export protein
D NYR89_10020 GlcNAc transferase K07268 oapA; opacity associated protein
D NYR89_05010 surface lipoprotein assembly modifier K07280 K07280; outer membrane protein
D NYR89_07110 surface lipoprotein assembly modifier K07280 K07280; outer membrane protein
D NYR89_01960 YajG family lipoprotein K07286 yajG; uncharacterized lipoprotein
D NYR89_01475 AI-2E family transporter K11744 tqsA; AI-2 transport protein TqsA
D NYR89_08860 glycine zipper 2TM domain-containing protein K04062 osmB; osmotically inducible lipoprotein OsmB
D NYR89_07805 ccmE; cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D NYR89_09740 ccmI; c-type cytochrome biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D NYR89_09745 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D NYR89_06255 DUF4115 domain-containing protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D NYR89_01530 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D NYR89_06090 DsrE/DsrF/TusD sulfur relay family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D NYR89_02750 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D NYR89_10185 GNAT family N-acetyltransferase K02348 elaA; ElaA protein
D NYR89_05120 grcA; autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor
D NYR89_07550 virulence factor BrkB family protein K07058 K07058; membrane protein
D NYR89_06570 FxsA family protein K07113 fxsA; UPF0716 protein FxsA
D NYR89_00335 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D NYR89_08880 SlyX family protein K03745 slyX; SlyX protein
D NYR89_00425 SprT family zinc-dependent metalloprotease K02742 sprT; SprT protein
D NYR89_05335 DUF2238 domain-containing protein K08984 yjdF; putative membrane protein
D NYR89_05320 YcjF family protein K08990 ycjF; putative membrane protein
D NYR89_09245 DUF1440 domain-containing protein K08996 yagU; putative membrane protein
D NYR89_09005 YchJ family protein K09858 K09858; SEC-C motif domain protein
D NYR89_06045 malM; maltose operon protein MalM K05775 malM; maltose operon periplasmic protein
D NYR89_06470 psiE; phosphate-starvation-inducible protein PsiE K13256 psiE; protein PsiE
D NYR89_10475 zinc ribbon domain-containing protein YjdM K06193 phnA; protein PhnA
C 99997 Function unknown
D NYR89_02270 TPM domain-containing protein K06872 K06872; uncharacterized protein
D NYR89_03365 L-cystine transporter K06956 K06956; uncharacterized protein
D NYR89_05165 N-acetyltransferase K06975 K06975; uncharacterized protein
D NYR89_07060 acetate uptake transporter K07034 K07034; uncharacterized protein
D NYR89_06145 UPF0149 family protein K07039 K07039; uncharacterized protein
D NYR89_00270 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein
D NYR89_09185 TAXI family TRAP transporter solute-binding subunit K07080 K07080; uncharacterized protein
D NYR89_02675 TSUP family transporter K07090 K07090; uncharacterized protein
D NYR89_07625 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D NYR89_01820 YtfJ family protein K07109 K07109; uncharacterized protein
D NYR89_07255 yedE; selenium metabolism membrane protein YedE/FdhT K07112 K07112; uncharacterized protein
D NYR89_10790 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D NYR89_10915 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D NYR89_01125 hypothetical protein K07118 K07118; uncharacterized protein
D NYR89_10720 penicillin-binding protein activator K07121 K07121; uncharacterized protein
D NYR89_01260 ATP-binding protein K07133 K07133; uncharacterized protein
D NYR89_01770 ATP-binding protein K07133 K07133; uncharacterized protein
D NYR89_02960 AAA family ATPase K07133 K07133; uncharacterized protein
D NYR89_02520 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D NYR89_05730 YitT family protein K07149 K07149; uncharacterized protein
D NYR89_03195 DUF554 domain-containing protein K07150 K07150; uncharacterized protein
D NYR89_10465 yggU; DUF167 family protein YggU K09131 K09131; uncharacterized protein
D NYR89_09820 PFL family protein K09157 K09157; uncharacterized protein
D NYR89_09275 ybeD; DUF493 family protein YbeD K09158 K09158; uncharacterized protein
D NYR89_04380 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein
D NYR89_08190 DUF1349 domain-containing protein K09702 K09702; uncharacterized protein
D NYR89_05215 YciI family protein K09780 K09780; uncharacterized protein
D NYR89_02000 DUF808 domain-containing protein K09781 K09781; uncharacterized protein
D NYR89_08155 YbaN family protein K09790 K09790; uncharacterized protein
D NYR89_00355 Trm112 family protein K09791 K09791; uncharacterized protein
D NYR89_00830 YdcH family protein K09794 K09794; uncharacterized protein
D NYR89_04550 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein
D NYR89_05605 RnfH family protein K09801 K09801; uncharacterized protein
D NYR89_03865 DUF496 family protein K09802 K09802; uncharacterized protein
D NYR89_04110 BrnT family toxin K09803 K09803; uncharacterized protein
D NYR89_04490 VirK/YbjX family protein K09824 virK; uncharacterized protein
D NYR89_00615 nqrM; (Na+)-NQR maturation NqrM K05952 K05952; uncharacterized protein
D NYR89_03345 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D NYR89_02725 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D NYR89_06370 DUF416 family protein K09891 K09891; uncharacterized protein
D NYR89_05190 yihI; Der GTPase-activating protein YihI K09894 K09894; uncharacterized protein
D NYR89_06380 UPF0149 family protein K09895 K09895; uncharacterized protein
D NYR89_10745 YihD family protein K09896 K09896; uncharacterized protein
D NYR89_07250 DUF413 domain-containing protein K09897 K09897; uncharacterized protein
D NYR89_07325 YheU family protein K09898 K09898; uncharacterized protein
D NYR89_05235 DUF412 domain-containing protein K09899 K09899; uncharacterized protein
D NYR89_00150 HI1450 family dsDNA-mimic protein K09901 K09901; uncharacterized protein
D NYR89_03910 YcgL domain-containing protein K09902 K09902; uncharacterized protein
D NYR89_03150 YejL family protein K09904 K09904; uncharacterized protein
D NYR89_07380 VOC family protein K09907 K09907; uncharacterized protein
D NYR89_03330 YhcB family protein K09908 K09908; uncharacterized protein
D NYR89_05035 DUF2057 domain-containing protein K09909 K09909; uncharacterized protein
D NYR89_05205 YacL family protein K09910 K09910; uncharacterized protein
D NYR89_07600 matP; macrodomain Ter protein MatP K09911 K09911; uncharacterized protein
D NYR89_04700 YoaH family protein K09917 K09917; uncharacterized protein
D NYR89_02230 hypothetical protein K09924 K09924; uncharacterized protein
D NYR89_03530 DUF1508 domain-containing protein K09946 K09946; uncharacterized protein
D NYR89_08175 hypothetical protein K09968 K09968; uncharacterized protein
D NYR89_01040 hypothetical protein K09979 K09979; uncharacterized protein
D NYR89_03190 hypothetical protein K09979 K09979; uncharacterized protein
D NYR89_03940 TIGR00153 family protein K07220 K07220; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 10, 2024