+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Amoebophilus asiaticus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Aasi_0813 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Aasi_0400 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Aasi_1011 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Aasi_0155 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Aasi_0620 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Aasi_0292 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Aasi_0076 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Aasi_0286 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Aasi_0813 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Aasi_0400 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Aasi_1011 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Aasi_0155 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Aasi_0057 methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Aasi_0620 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ E Aasi_1422 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Aasi_1926 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Aasi_0323 hypothetical protein K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Aasi_0226 hypothetical protein K03701 uvrA; excinuclease ABC subunit A E Aasi_0942 hypothetical protein K03701 uvrA; excinuclease ABC subunit A E Aasi_0293 hypothetical protein K03702 uvrB; excinuclease ABC subunit B E Aasi_0024 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Aasi_0859 hypothetical protein K03703 uvrC; excinuclease ABC subunit C E Aasi_0038 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Aasi_0323 hypothetical protein K02335 polA; DNA polymerase I [EC:2.7.7.7] E Aasi_1926 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Aasi_1396 hypothetical protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Aasi_1395 hypothetical protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Aasi_0170 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Aasi_0272 hypothetical protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Aasi_0767 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS E Aasi_0467 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS E Aasi_0916 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Aasi_1174 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E Aasi_0650 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Aasi_0152 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Aasi_1447 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Aasi_0634 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Aasi_0331 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Aasi_1926 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Aasi_0038 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Aasi_0156 single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Aasi_1324 hypothetical protein K03553 recA; recombination protein RecA E Aasi_1446 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E Aasi_0299 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Aasi_0769 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Aasi_0524 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E Aasi_1324 hypothetical protein K03553 recA; recombination protein RecA E Aasi_1168 hypothetical protein K04485 radA; DNA repair protein RadA/Sms E Aasi_0498 hypothetical protein K03629 recF; DNA replication and repair protein RecF E Aasi_0311 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Aasi_1422 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Aasi_1674 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E Aasi_0625 hypothetical protein K06187 recR; recombination protein RecR E Aasi_1446 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E Aasi_0299 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Aasi_0769 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Aasi_0828 hypothetical protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Aasi_1109 hypothetical protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Aasi_1150 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Aasi_0154 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Aasi_1422 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Aasi_1674 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F Aasi_0625 hypothetical protein K06187 recR; recombination protein RecR F Aasi_1926 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Aasi_1309 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Aasi_1165 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Aasi_0226 hypothetical protein K03701 uvrA; excinuclease ABC subunit A F Aasi_0942 hypothetical protein K03701 uvrA; excinuclease ABC subunit A F Aasi_0293 hypothetical protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D Aasi_1324 hypothetical protein K03553 recA; recombination protein RecA D Aasi_0156 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Aasi_1167 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D Aasi_1597 hypothetical protein K02347 polX; DNA polymerase (family X) C DNA helicases C Modulation of nucleotide pools D Aasi_0292 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Aasi_0076 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Aasi_0536 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Aasi_0535 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D Aasi_0601 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024