+F Repair protein KO
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DNA Repair and Recombination Proteins - Haploplasma axanthum
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D NCTC10138_01697 adaB; Methylated-DNA--protein-cysteine methyltransferase, inducible K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NCTC10138_01633 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E NCTC10138_00607 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E NCTC10138_00724 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D NCTC10138_00259 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_00305 nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_00310 mutX_1; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_01106 mutX_2; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_00612 dut; deoxyuridine 5'triphosphate nucleotidohydrolase dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D NCTC10138_01697 adaB; Methylated-DNA--protein-cysteine methyltransferase, inducible K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NCTC10138_01633 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E NCTC10138_00607 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E NCTC10138_00388 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E NCTC10138_00756 mutM; Foramidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E NCTC10138_00724 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E NCTC10138_00993 nfo; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
D DNA ligase
E NCTC10138_00033 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E NCTC10138_00755 polA; DNA polymerase I: 5'-3' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E NCTC10138_00032 uvrA; ABC transporter ATPase K03701 uvrA; excinuclease ABC subunit A
E NCTC10138_01021 uvrB_2; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E NCTC10138_01538 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E NCTC10138_00037 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NCTC10138_00038 pcrA; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NCTC10138_00755 polA; DNA polymerase I: 5'-3' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
E NCTC10138_00033 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F NCTC10138_00557 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F NCTC10138_00558 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F NCTC10138_00473 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F NCTC10138_00421 DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F NCTC10138_01539 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F NCTC10138_00105 uvrB_1; excinuclease ABC subunit B K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E NCTC10138_01066 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
E NCTC10138_01178 mutS2; MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E NCTC10138_01067 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E NCTC10138_00987 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E NCTC10138_00988 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E NCTC10138_00917 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E NCTC10138_00643 polC_1; DNA polymerase III polC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E NCTC10138_00294 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E NCTC10138_01056 holA; DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E NCTC10138_00515 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E NCTC10138_01057 polC_2; DNA polymerase III polC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E NCTC10138_00417 dnaX; DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E NCTC10138_00033 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E NCTC10138_00037 uvrD; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NCTC10138_00038 pcrA; ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NCTC10138_00576 ssb_1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E NCTC10138_01205 ssb_2; Single stranded DNA binding protein (part of ICE) K03111 ssb; single-strand DNA-binding protein
E NCTC10138_00251 dam; adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E NCTC10138_01270 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E NCTC10138_01060 recA; recombinase A K03553 recA; recombination protein RecA
E NCTC10138_01138 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E NCTC10138_01139 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E NCTC10138_01350 Holliday junction resolvase K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E NCTC10138_00879 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E NCTC10138_01060 recA; recombinase A K03553 recA; recombination protein RecA
E NCTC10138_00364 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E NCTC10138_00721 plsX; fatty acid/phospholipid synthesis protein PlsX K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E NCTC10138_01392 recO; Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O)
E NCTC10138_00418 recR; Recombination protein K06187 recR; recombination protein RecR
E NCTC10138_00989 recN; ABC transporter ATP-binding protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E NCTC10138_01195 recU; Holliday junction-specific endonuclease K03700 recU; recombination protein U
E NCTC10138_01138 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E NCTC10138_01139 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E NCTC10138_00978 addA; ATP-dependent DNA helicase UvrD/PcrA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E NCTC10138_00977 Inactivated superfamily I helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F NCTC10138_00366 gyrA_1; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F NCTC10138_00365 gyrB_1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F NCTC10138_00737 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F NCTC10138_01077 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F NCTC10138_01392 recO; Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O)
F NCTC10138_00418 recR; Recombination protein K06187 recR; recombination protein RecR
F NCTC10138_00033 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F NCTC10138_00032 uvrA; ABC transporter ATPase K03701 uvrA; excinuclease ABC subunit A
F NCTC10138_01021 uvrB_2; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D NCTC10138_00991 dinP_2; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D NCTC10138_00902 dinP_1; DNA polymerase IV K03502 umuC; DNA polymerase V
C Other SOS response factors
D NCTC10138_01060 recA; recombinase A K03553 recA; recombination protein RecA
D NCTC10138_00381 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D NCTC10138_00989 recN; ABC transporter ATP-binding protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D NCTC10138_00576 ssb_1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D NCTC10138_01205 ssb_2; Single stranded DNA binding protein (part of ICE) K03111 ssb; single-strand DNA-binding protein
D NCTC10138_00889 recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D NCTC10138_00259 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_00305 nucleoside triphosphatase YtkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_00310 mutX_1; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_01106 mutX_2; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NCTC10138_00612 dut; deoxyuridine 5'triphosphate nucleotidohydrolase dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NCTC10138_00914 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NCTC10138_00915 nrdF2; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D NCTC10138_00413 nrnA_1; Bifunctional oligoribonuclease and PAP phosphatase nrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D NCTC10138_00414 nrnA_2; Bifunctional oligoribonuclease and PAP phosphatase nrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024