+F Repair protein KO #

  DNA Repair and Recombination Proteins - Anaerolineaceae bacterium oral taxon 439

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BEQ56_05815 6-O-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BEQ56_04365 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BEQ56_12715 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BEQ56_10465 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BEQ56_03460 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BEQ56_09485 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BEQ56_05815 6-O-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BEQ56_01480 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BEQ56_06415 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BEQ56_04365 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BEQ56_12030 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BEQ56_12715 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BEQ56_09450 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E BEQ56_11645 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BEQ56_07140 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BEQ56_03570 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BEQ56_04990 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BEQ56_07845 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BEQ56_10770 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BEQ56_01585 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BEQ56_04360 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BEQ56_09715 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BEQ56_03570 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BEQ56_07140 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BEQ56_08490 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BEQ56_12400 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BEQ56_03225 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BEQ56_05900 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BEQ56_02295 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BEQ56_12370 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BEQ56_12590 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BEQ56_12595 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BEQ56_10760 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BEQ56_12115 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BEQ56_01075 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BEQ56_02130 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BEQ56_09050 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BEQ56_07140 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BEQ56_04360 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BEQ56_09715 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BEQ56_01135 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BEQ56_05130 recombinase RecA K03553 recA; recombination protein RecA E BEQ56_07850 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BEQ56_08665 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BEQ56_07860 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BEQ56_11555 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BEQ56_03905 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E BEQ56_03895 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BEQ56_05130 recombinase RecA K03553 recA; recombination protein RecA E BEQ56_01065 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BEQ56_09755 hypothetical protein K03629 recF; DNA replication and repair protein RecF E BEQ56_04285 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_04460 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_00575 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_13020 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_01785 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_03020 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_03625 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_04480 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BEQ56_11645 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BEQ56_03000 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BEQ56_09060 recombination protein RecR K06187 recR; recombination protein RecR E BEQ56_02715 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BEQ56_07850 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BEQ56_08665 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BEQ56_07860 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E BEQ56_02865 subtype I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E BEQ56_03905 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E BEQ56_03895 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BEQ56_08505 hypothetical protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BEQ56_02615 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BEQ56_08695 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BEQ56_06625 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BEQ56_11645 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BEQ56_03000 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BEQ56_09060 recombination protein RecR K06187 recR; recombination protein RecR F BEQ56_07140 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BEQ56_04990 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BEQ56_07845 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BEQ56_10770 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BEQ56_05115 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BEQ56_05130 recombinase RecA K03553 recA; recombination protein RecA D BEQ56_00790 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D BEQ56_02190 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BEQ56_02715 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BEQ56_07835 hypothetical protein K02336 polB; DNA polymerase II [EC:2.7.7.7] D BEQ56_01135 hypothetical protein K03111 ssb; single-strand DNA-binding protein D BEQ56_11370 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BEQ56_09675 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BEQ56_10465 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BEQ56_03460 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BEQ56_09485 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BEQ56_02495 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D BEQ56_10805 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024