+F Repair protein KO
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DNA Repair and Recombination Proteins - Agaricus bisporus var. burnettii JB137-S8
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AGABI1DRAFT45427 AGABI1DRAFT_45427; hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AGABI1DRAFT38863 AGABI1DRAFT_38863; hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AGABI1DRAFT32274 AGABI1DRAFT_32274; hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AGABI1DRAFT75054 AGABI1DRAFT_75054; hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AGABI1DRAFT69564 AGABI1DRAFT_69564; hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E AGABI1DRAFT64172 AGABI1DRAFT_64172; hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AGABI1DRAFT78639 AGABI1DRAFT_78639; hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E AGABI1DRAFT24137 AGABI1DRAFT_24137; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AGABI1DRAFT69456 AGABI1DRAFT_69456; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AGABI1DRAFT33588 AGABI1DRAFT_33588; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AGABI1DRAFT111155 AGABI1DRAFT_111155; hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E AGABI1DRAFT131644 AGABI1DRAFT_131644; hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E AGABI1DRAFT70906 AGABI1DRAFT_70906; hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F AGABI1DRAFT55049 AGABI1DRAFT_55049; hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F AGABI1DRAFT118391 AGABI1DRAFT_118391; hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F AGABI1DRAFT126056 AGABI1DRAFT_126056; hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F AGABI1DRAFT83087 AGABI1DRAFT_83087; hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F AGABI1DRAFT61718 AGABI1DRAFT_61718; hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F AGABI1DRAFT99739 AGABI1DRAFT_99739; hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F AGABI1DRAFT132823 AGABI1DRAFT_132823; hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F AGABI1DRAFT113914 AGABI1DRAFT_113914; hypothetical protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E AGABI1DRAFT115487 AGABI1DRAFT_115487; hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E AGABI1DRAFT114134 AGABI1DRAFT_114134; hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E AGABI1DRAFT62861 AGABI1DRAFT_62861; hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E AGABI1DRAFT51454 AGABI1DRAFT_51454; hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E AGABI1DRAFT45345 AGABI1DRAFT_45345; hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E AGABI1DRAFT122637 AGABI1DRAFT_122637; hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E AGABI1DRAFT125354 AGABI1DRAFT_125354; hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E AGABI1DRAFT122771 AGABI1DRAFT_122771; hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F AGABI1DRAFT40343 AGABI1DRAFT_40343; hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F AGABI1DRAFT112618 AGABI1DRAFT_112618; hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F AGABI1DRAFT130185 AGABI1DRAFT_130185; hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AGABI1DRAFT69105 AGABI1DRAFT_69105; hypothetical protein K10609 CUL4; cullin 4
F AGABI1DRAFT39860 AGABI1DRAFT_39860; hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F AGABI1DRAFT69486 AGABI1DRAFT_69486; hypothetical protein K15082 RAD7; DNA repair protein RAD7
F AGABI1DRAFT123009 AGABI1DRAFT_123009; hypothetical protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F AGABI1DRAFT65857 AGABI1DRAFT_65857; hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F AGABI1DRAFT117576 AGABI1DRAFT_117576; hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F AGABI1DRAFT112673 AGABI1DRAFT_112673; hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F AGABI1DRAFT114282 AGABI1DRAFT_114282; hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F AGABI1DRAFT31547 AGABI1DRAFT_31547; hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F AGABI1DRAFT111877 AGABI1DRAFT_111877; hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F AGABI1DRAFT117227 AGABI1DRAFT_117227; hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F AGABI1DRAFT85962 AGABI1DRAFT_85962; hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F AGABI1DRAFT86027 AGABI1DRAFT_86027; hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F AGABI1DRAFT115317 AGABI1DRAFT_115317; hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
E Cul4-CSA complex
F AGABI1DRAFT130185 AGABI1DRAFT_130185; hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AGABI1DRAFT69105 AGABI1DRAFT_69105; hypothetical protein K10609 CUL4; cullin 4
F AGABI1DRAFT39860 AGABI1DRAFT_39860; hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E Other TCR factor
F AGABI1DRAFT68485 AGABI1DRAFT_68485; hypothetical protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E AGABI1DRAFT121098 AGABI1DRAFT_121098; hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E AGABI1DRAFT118129 AGABI1DRAFT_118129; hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E AGABI1DRAFT119267 AGABI1DRAFT_119267; hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E AGABI1DRAFT71744 AGABI1DRAFT_71744; hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E AGABI1DRAFT119282 AGABI1DRAFT_119282; hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E AGABI1DRAFT114851 AGABI1DRAFT_114851; hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E AGABI1DRAFT115178 AGABI1DRAFT_115178; hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E AGABI1DRAFT54850 AGABI1DRAFT_54850; hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E AGABI1DRAFT124090 AGABI1DRAFT_124090; hypothetical protein K06634 CCNH; cyclin H
E AGABI1DRAFT118290 AGABI1DRAFT_118290; hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E AGABI1DRAFT114047 AGABI1DRAFT_114047; hypothetical protein K07466 RFA1; replication factor A1
E AGABI1DRAFT111214 AGABI1DRAFT_111214; hypothetical protein K10739 RFA2; replication factor A2
E AGABI1DRAFT115241 AGABI1DRAFT_115241; hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E AGABI1DRAFT123773 AGABI1DRAFT_123773; hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells
E AGABI1DRAFT71740 AGABI1DRAFT_71740; hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E AGABI1DRAFT109572 AGABI1DRAFT_109572; hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E AGABI1DRAFT122321 AGABI1DRAFT_122321; hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E AGABI1DRAFT61094 AGABI1DRAFT_61094; hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E AGABI1DRAFT51454 AGABI1DRAFT_51454; hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E AGABI1DRAFT118749 AGABI1DRAFT_118749; hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E AGABI1DRAFT40898 AGABI1DRAFT_40898; hypothetical protein K03869 CUL3; cullin 3
E AGABI1DRAFT115023 AGABI1DRAFT_115023; hypothetical protein K03872 ELOC; elongin-C
E AGABI1DRAFT68147 AGABI1DRAFT_68147; hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AGABI1DRAFT131867 AGABI1DRAFT_131867; hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E AGABI1DRAFT34226 AGABI1DRAFT_34226; hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E AGABI1DRAFT78171 AGABI1DRAFT_78171; hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E AGABI1DRAFT132042 AGABI1DRAFT_132042; hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E AGABI1DRAFT19077 AGABI1DRAFT_19077; hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E AGABI1DRAFT127557 AGABI1DRAFT_127557; hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E AGABI1DRAFT55049 AGABI1DRAFT_55049; hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E AGABI1DRAFT118391 AGABI1DRAFT_118391; hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E AGABI1DRAFT126056 AGABI1DRAFT_126056; hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E AGABI1DRAFT83087 AGABI1DRAFT_83087; hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E AGABI1DRAFT114047 AGABI1DRAFT_114047; hypothetical protein K07466 RFA1; replication factor A1
E AGABI1DRAFT111214 AGABI1DRAFT_111214; hypothetical protein K10739 RFA2; replication factor A2
E AGABI1DRAFT115241 AGABI1DRAFT_115241; hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E AGABI1DRAFT119115 AGABI1DRAFT_119115; hypothetical protein K10754 RFC1; replication factor C subunit 1
E AGABI1DRAFT110722 AGABI1DRAFT_110722; hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E AGABI1DRAFT69120 AGABI1DRAFT_69120; hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E AGABI1DRAFT114403 AGABI1DRAFT_114403; hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E AGABI1DRAFT35783 AGABI1DRAFT_35783; hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E AGABI1DRAFT115487 AGABI1DRAFT_115487; hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E AGABI1DRAFT78182 AGABI1DRAFT_78182; hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E AGABI1DRAFT51454 AGABI1DRAFT_51454; hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E AGABI1DRAFT118083 AGABI1DRAFT_118083; hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E AGABI1DRAFT129478 AGABI1DRAFT_129478; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E AGABI1DRAFT129478 AGABI1DRAFT_129478; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D BRCA complex
E AGABI1DRAFT104048 AGABI1DRAFT_104048; hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein
D RecA family proteins
E AGABI1DRAFT40760 AGABI1DRAFT_40760; hypothetical protein K10871 RAD51L3; RAD51-like protein 3
E AGABI1DRAFT124116 AGABI1DRAFT_124116; hypothetical protein K10879 XRCC2; DNA-repair protein XRCC2
D Rad52 family proteins
D Rad54 family proteins
E AGABI1DRAFT118061 AGABI1DRAFT_118061; hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AGABI1DRAFT71424 AGABI1DRAFT_71424; hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E AGABI1DRAFT78494 AGABI1DRAFT_78494; hypothetical protein K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E AGABI1DRAFT46203 AGABI1DRAFT_46203; hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AGABI1DRAFT107841 AGABI1DRAFT_107841; hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E AGABI1DRAFT114047 AGABI1DRAFT_114047; hypothetical protein K07466 RFA1; replication factor A1
E AGABI1DRAFT111214 AGABI1DRAFT_111214; hypothetical protein K10739 RFA2; replication factor A2
E AGABI1DRAFT115241 AGABI1DRAFT_115241; hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E AGABI1DRAFT56885 AGABI1DRAFT_56885; hypothetical protein K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E AGABI1DRAFT125235 AGABI1DRAFT_125235; hypothetical protein K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E AGABI1DRAFT125508 AGABI1DRAFT_125508; hypothetical protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E AGABI1DRAFT72653 AGABI1DRAFT_72653; hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E AGABI1DRAFT113080 AGABI1DRAFT_113080; hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E AGABI1DRAFT58628 AGABI1DRAFT_58628; hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E AGABI1DRAFT113976 AGABI1DRAFT_113976; hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E AGABI1DRAFT112760 AGABI1DRAFT_112760; hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E AGABI1DRAFT114937 AGABI1DRAFT_114937; hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E AGABI1DRAFT124641 AGABI1DRAFT_124641; hypothetical protein K10991 SWI5; DNA repair protein Swi5/Sae3
E AGABI1DRAFT126840 AGABI1DRAFT_126840; hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E AGABI1DRAFT9336 AGABI1DRAFT_9336; hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E AGABI1DRAFT80803 AGABI1DRAFT_80803; hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E AGABI1DRAFT109018 AGABI1DRAFT_109018; hypothetical protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E AGABI1DRAFT16911 AGABI1DRAFT_16911; hypothetical protein K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E AGABI1DRAFT41369 AGABI1DRAFT_41369; hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E AGABI1DRAFT121627 AGABI1DRAFT_121627; hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E AGABI1DRAFT96384 AGABI1DRAFT_96384; hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E AGABI1DRAFT129478 AGABI1DRAFT_129478; hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E AGABI1DRAFT70360 AGABI1DRAFT_70360; hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E AGABI1DRAFT119018 AGABI1DRAFT_119018; hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E AGABI1DRAFT122771 AGABI1DRAFT_122771; hypothetical protein K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E AGABI1DRAFT36756 AGABI1DRAFT_36756; hypothetical protein K03513 POLM; DNA polymerase mu [EC:2.7.7.7]
D Other NHEJ factors
E AGABI1DRAFT122637 AGABI1DRAFT_122637; hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E AGABI1DRAFT69756 AGABI1DRAFT_69756; hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E AGABI1DRAFT79280 AGABI1DRAFT_79280; hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E AGABI1DRAFT24727 AGABI1DRAFT_24727; hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E AGABI1DRAFT114351 AGABI1DRAFT_114351; hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E AGABI1DRAFT46203 AGABI1DRAFT_46203; hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AGABI1DRAFT107841 AGABI1DRAFT_107841; hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
E AGABI1DRAFT104048 AGABI1DRAFT_104048; hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein
D Other FA pathway factors
E AGABI1DRAFT104411 AGABI1DRAFT_104411; hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E AGABI1DRAFT69024 AGABI1DRAFT_69024; hypothetical protein K11137 TELO2; telomere length regulation protein
E AGABI1DRAFT77625 AGABI1DRAFT_77625; hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E AGABI1DRAFT122533 AGABI1DRAFT_122533; hypothetical protein K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
D Ubiquitin ligases
D Others
E AGABI1DRAFT109839 AGABI1DRAFT_109839; hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E AGABI1DRAFT31889 AGABI1DRAFT_31889; hypothetical protein K11684 BDF1; bromodomain-containing factor 1
E AGABI1DRAFT118083 AGABI1DRAFT_118083; hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AGABI1DRAFT121111 AGABI1DRAFT_121111; hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D AGABI1DRAFT55621 AGABI1DRAFT_55621; hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D AGABI1DRAFT118512 AGABI1DRAFT_118512; hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D AGABI1DRAFT32464 AGABI1DRAFT_32464; hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D AGABI1DRAFT116462 AGABI1DRAFT_116462; hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D AGABI1DRAFT67033 AGABI1DRAFT_67033; hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D AGABI1DRAFT67507 AGABI1DRAFT_67507; hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D AGABI1DRAFT112306 AGABI1DRAFT_112306; hypothetical protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D AGABI1DRAFT115008 AGABI1DRAFT_115008; hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D AGABI1DRAFT115487 AGABI1DRAFT_115487; hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
D AGABI1DRAFT123986 AGABI1DRAFT_123986; hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D AGABI1DRAFT80842 AGABI1DRAFT_80842; hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D AGABI1DRAFT77581 AGABI1DRAFT_77581; hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D AGABI1DRAFT40267 AGABI1DRAFT_40267; hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D AGABI1DRAFT129999 AGABI1DRAFT_129999; hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D AGABI1DRAFT110722 AGABI1DRAFT_110722; hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D AGABI1DRAFT69120 AGABI1DRAFT_69120; hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D AGABI1DRAFT114403 AGABI1DRAFT_114403; hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D AGABI1DRAFT35783 AGABI1DRAFT_35783; hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D AGABI1DRAFT40267 AGABI1DRAFT_40267; hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D AGABI1DRAFT101031 AGABI1DRAFT_101031; hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D AGABI1DRAFT125103 AGABI1DRAFT_125103; hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D AGABI1DRAFT128101 AGABI1DRAFT_128101; hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D AGABI1DRAFT69024 AGABI1DRAFT_69024; hypothetical protein K11137 TELO2; telomere length regulation protein
D AGABI1DRAFT117556 AGABI1DRAFT_117556; hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D AGABI1DRAFT130498 AGABI1DRAFT_130498; hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D AGABI1DRAFT114859 AGABI1DRAFT_114859; hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D AGABI1DRAFT120011 AGABI1DRAFT_120011; hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D AGABI1DRAFT70197 AGABI1DRAFT_70197; hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D AGABI1DRAFT122426 AGABI1DRAFT_122426; hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D AGABI1DRAFT132921 AGABI1DRAFT_132921; hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D AGABI1DRAFT34393 AGABI1DRAFT_34393; hypothetical protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D AGABI1DRAFT84435 AGABI1DRAFT_84435; hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D AGABI1DRAFT37595 AGABI1DRAFT_37595; hypothetical protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D AGABI1DRAFT108483 AGABI1DRAFT_108483; hypothetical protein K20780 MDC1; mediator of DNA damage checkpoint protein 1
D AGABI1DRAFT56372 AGABI1DRAFT_56372; hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D AGABI1DRAFT115434 AGABI1DRAFT_115434; hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D AGABI1DRAFT114289 AGABI1DRAFT_114289; hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D AGABI1DRAFT118424 AGABI1DRAFT_118424; hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D AGABI1DRAFT70037 AGABI1DRAFT_70037; hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D AGABI1DRAFT124352 AGABI1DRAFT_124352; hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D AGABI1DRAFT51014 AGABI1DRAFT_51014; hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D AGABI1DRAFT116259 AGABI1DRAFT_116259; hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D AGABI1DRAFT63554 AGABI1DRAFT_63554; hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D AGABI1DRAFT50668 AGABI1DRAFT_50668; hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D AGABI1DRAFT111461 AGABI1DRAFT_111461; hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D AGABI1DRAFT103644 AGABI1DRAFT_103644; hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D AGABI1DRAFT115900 AGABI1DRAFT_115900; hypothetical protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D AGABI1DRAFT108808 AGABI1DRAFT_108808; hypothetical protein K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D AGABI1DRAFT113618 AGABI1DRAFT_113618; hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AGABI1DRAFT58613 AGABI1DRAFT_58613; hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D AGABI1DRAFT39266 AGABI1DRAFT_39266; hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D AGABI1DRAFT113579 AGABI1DRAFT_113579; hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AGABI1DRAFT45427 AGABI1DRAFT_45427; hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AGABI1DRAFT38863 AGABI1DRAFT_38863; hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AGABI1DRAFT32274 AGABI1DRAFT_32274; hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AGABI1DRAFT75054 AGABI1DRAFT_75054; hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AGABI1DRAFT71586 AGABI1DRAFT_71586; hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AGABI1DRAFT64172 AGABI1DRAFT_64172; hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AGABI1DRAFT24137 AGABI1DRAFT_24137; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AGABI1DRAFT69456 AGABI1DRAFT_69456; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AGABI1DRAFT33588 AGABI1DRAFT_33588; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AGABI1DRAFT104902 AGABI1DRAFT_104902; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E AGABI1DRAFT104902 AGABI1DRAFT_104902; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D AGABI1DRAFT113618 AGABI1DRAFT_113618; hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024