+F Repair protein KO #

  DNA Repair and Recombination Proteins - Azospirillum brasilense Az39

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ABAZ39_14090 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ABAZ39_05020 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ABAZ39_22155 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ABAZ39_20075 DNA lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E ABAZ39_14300 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E ABAZ39_04240 Fe-S cluster assembly protein HesB K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ABAZ39_00915 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABAZ39_30935 phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABAZ39_00190 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ABAZ39_14090 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D ABAZ39_14290 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D ABAZ39_05020 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E ABAZ39_15900 DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E ABAZ39_25335 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E ABAZ39_20845 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E ABAZ39_11160 DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E ABAZ39_22155 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ABAZ39_08295 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E ABAZ39_14575 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E ABAZ39_20075 DNA lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E ABAZ39_14300 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E ABAZ39_04240 Fe-S cluster assembly protein HesB K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ABAZ39_16660 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E ABAZ39_13875 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E ABAZ39_07690 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ABAZ39_02750 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E ABAZ39_16825 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E ABAZ39_19740 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E ABAZ39_06895 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E ABAZ39_15785 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E ABAZ39_02675 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ABAZ39_02750 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ABAZ39_03590 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ABAZ39_03595 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ABAZ39_08700 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ABAZ39_17770 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ABAZ39_05660 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] F ABAZ39_26185 hypothetical protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ABAZ39_13745 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E ABAZ39_10570 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ABAZ39_18675 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ABAZ39_08250 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ABAZ39_14600 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ABAZ39_19710 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E ABAZ39_14040 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ABAZ39_06690 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ABAZ39_07345 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ABAZ39_01025 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ABAZ39_01075 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ABAZ39_12435 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ABAZ39_14100 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ABAZ39_14740 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ABAZ39_05240 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ABAZ39_01975 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ABAZ39_02750 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ABAZ39_02675 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ABAZ39_16830 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ABAZ39_11530 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ABAZ39_10145 recombinase RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ABAZ39_04005 recombinase RecA K03553 recA; recombination protein RecA E ABAZ39_04765 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ABAZ39_04770 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ABAZ39_04760 crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ABAZ39_07265 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ABAZ39_02080 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ABAZ39_15920 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E ABAZ39_15925 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ABAZ39_04005 recombinase RecA K03553 recA; recombination protein RecA E ABAZ39_06225 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E ABAZ39_14605 recombinase RecF K03629 recF; DNA replication and repair protein RecF E ABAZ39_05725 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ABAZ39_07690 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ABAZ39_22690 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E ABAZ39_01985 recombinase RecR K06187 recR; recombination protein RecR E ABAZ39_02725 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E ABAZ39_04765 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ABAZ39_04770 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ABAZ39_04760 crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ABAZ39_07265 hypothetical protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E ABAZ39_00675 helicase I K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E ABAZ39_15920 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E ABAZ39_15925 metallophosphatase K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ABAZ39_16865 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ABAZ39_14610 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ABAZ39_19465 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F ABAZ39_17305 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ABAZ39_06815 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta F ABAZ39_23605 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta F ABAZ39_23665 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta F ABAZ39_08405 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ABAZ39_07355 hypothetical protein K07455 recT; recombination protein RecT F ABAZ39_07690 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ABAZ39_22690 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F ABAZ39_01985 recombinase RecR K06187 recR; recombination protein RecR F ABAZ39_02750 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F ABAZ39_05970 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F ABAZ39_01210 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F ABAZ39_00910 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ABAZ39_16825 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F ABAZ39_19740 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ABAZ39_21855 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D ABAZ39_04005 recombinase RecA K03553 recA; recombination protein RecA D ABAZ39_08125 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D ABAZ39_02725 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D ABAZ39_01830 hypothetical protein K14160 imuA; protein ImuA D ABAZ39_01855 DNA polymerase K14161 imuB; protein ImuB D ABAZ39_01850 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D ABAZ39_16830 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ABAZ39_15385 regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D ABAZ39_12170 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D ABAZ39_05035 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D ABAZ39_00915 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABAZ39_30935 phosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ABAZ39_00190 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ABAZ39_10450 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D ABAZ39_22760 ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D ABAZ39_16240 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024