+F Repair protein KO #

  DNA Repair and Recombination Proteins - Paracholeplasma brassicae

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BN85309620 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BN85312040 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BN85313430 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BN85307600 mutY; A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BN85303570 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E BN85311930 Helicase c2 domain-containing protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BN85305040 mutT; Mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BN85311940 mutT; NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BN85313320 dut; DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BN85309620 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BN85312040 phrB; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BN85313430 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BN85307600 mutY; A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BN85306410 mutM; Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BN85303570 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BN85311120 nfo; Endodeoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E BN85315970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BN85306400 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BN85312900 putative excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E BN85315960 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E BN85312710 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E BN85305940 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E BN85315980 ATP-dependent DNA helicase, UvrD/REP K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN85315990 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN85306400 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BN85315970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BN85303060 rpoB; DNA-directed RNA polymerase, subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BN85303070 rpoC; DNA-directed RNA polymerase, subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BN85302600 rpoA; DNA-directed RNA polymerase, subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BN85316450 rpoE; Putative DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F BN85305930 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BN85300180 mfd; Transcription-repair coupling factor (Superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BN85310080 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E BN85309020 mutS; DNA mismatch repair protein MutS, truncated K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BN85310070 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BN85311220 xseA; Exodeoxyribonuclease 7 large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BN85311210 xseB; putative exodeoxyribonuclease 7 small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BN85312810 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BN85305120 polC; DNA polymerase III polC-type (PolIII) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E BN85300020 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BN85310190 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BN85302720 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BN85310180 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BN85316500 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BN85315970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BN85315980 ATP-dependent DNA helicase, UvrD/REP K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN85315990 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN85303170 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BN85307770 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BN85312180 recD; ATP-dependent exoDNAse (Exonuclease V), alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BN85310150 recA; Recombinase A K03553 recA; recombination protein RecA E BN85308280 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BN85308290 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BN85306140 priA; DNA replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BN85300230 sbcC; DNA repair exonuclease, subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BN85309430 conserved hypothetical protein (DUF2357) K03546 sbcC; DNA repair protein SbcC/Rad50 E BN85300220 sbcD; DNA repair exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BN85310150 recA; Recombinase A K03553 recA; recombination protein RecA E BN85300040 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E BN85303530 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN85307150 recO; Recombination repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) E BN85316480 recR; Recombination protein RecR K06187 recR; recombination protein RecR E BN85311180 recN; DNA repair protein, ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) E BN85307860 recU; Holliday junction resolvase RecU K03700 recU; recombination protein U E BN85308280 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BN85308290 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E BN85300200 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BN85300230 sbcC; DNA repair exonuclease, subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BN85309430 conserved hypothetical protein (DUF2357) K03546 sbcC; DNA repair protein SbcC/Rad50 E BN85300220 sbcD; DNA repair exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BN85300060 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BN85300050 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BN85306350 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BN85309980 DNA binding protein, histone-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BN85307150 recO; Recombination repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) F BN85316480 recR; Recombination protein RecR K06187 recR; recombination protein RecR F BN85315970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BN85312900 putative excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F BN85315960 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F BN85312710 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BN85311170 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BN85310520 DNA-damage repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D BN85310150 recA; Recombinase A K03553 recA; recombination protein RecA D BN85311180 recN; DNA repair protein, ATPase K03631 recN; DNA repair protein RecN (Recombination protein N) D BN85303170 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BN85307770 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BN85306250 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D BN85305040 mutT; Mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BN85311940 mutT; NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BN85313320 dut; DeoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BN85316230 nrdE; Ribonucleoside-diphosphate reductase, alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BN85316630 nrdA; Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BN85316640 nrdB; Ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BN85316550 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D BN85316560 Phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024