+E Ribosome biogenesis KO
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Ribosome Biogenesis - Acinetobacter oleivorans
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D AOLE_04565 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D AOLE_16770 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C AOLE_04570 era; GTP-binding protein Era K03595 era; GTPase
C AOLE_04665 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C AOLE_18160 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C AOLE_17755 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C AOLE_00430 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C AOLE_18025 transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D AOLE_06565 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D AOLE_02505 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AOLE_00095 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AOLE_03035 Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D AOLE_14245 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D AOLE_05335 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AOLE_10890 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AOLE_01430 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D AOLE_14100 Tetrapyrrole (Corrin/Porphyrin) Methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D AOLE_16250 putative methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D AOLE_01465 23S ribosomal RNA G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D AOLE_17810 SpoU rRNA Methylase family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AOLE_03830 FtsJ-like methyltransferase family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D AOLE_14190 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D AOLE_02385 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D AOLE_13485 rlmL; 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D AOLE_16930 UPF0063 protein yfgB K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D AOLE_16570 rumA; 23S rRNA 5-methyluridine methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AOLE_04835 dual specificity pseudouridine synthase for 23S rRNA and tRNAphe modification K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AOLE_06580 putative pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AOLE_18880 putative dual specificity pseudouridine synthase for 23S rRNA and tRNAphe modification (RluA-like) protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AOLE_15615 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AOLE_17425 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D AOLE_15485 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AOLE_04760 16S rRNA uridine-516 pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C AOLE_15355 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C AOLE_02415 acetyltransferase, GNAT family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C AOLE_01640 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C AOLE_07305 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C AOLE_13690 YcaO-like fatty acid binding protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AOLE_06235 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C AOLE_10295 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C AOLE_10940 Cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C AOLE_04565 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C AOLE_17430 Ribonuclease E(RNase E) K08300 rne; ribonuclease E [EC:3.1.26.12]
C AOLE_03315 ribonuclease G, endoribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C AOLE_17835 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C AOLE_04570 era; GTP-binding protein Era K03595 era; GTPase
C AOLE_16775 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C AOLE_16895 engA; GTP-binding protein EngA K03977 engA; GTPase
C AOLE_04665 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C AOLE_02530 GTP-binding proten HflX K03665 hflX; GTPase
B Other maturation factors
C AOLE_18525 Protein yrdC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C AOLE_01575 GTP pyrophosphokinase(ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AOLE_17745 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C AOLE_17760 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C AOLE_16605 iojap-like protein K09710 ybeB; ribosome-associated protein
C AOLE_02340 metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C AOLE_03825 putative RNA-binding protein K07574 yhbY; RNA-binding protein
C AOLE_16515 hypothetical protein K09889 yjgA; ribosome-associated protein
C AOLE_16335 Probable sigma(54) modulation protein (ORF95) K05808 hpf; ribosome hibernation promoting factor
C AOLE_11265 GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
C AOLE_15590 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024