+E Transcription factors KO
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Transcription Factors - Acidovorax carolinensis NA2
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D CBP33_09990 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D CBP33_14940 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CBP33_15530 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CBP33_17955 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CBP33_01770 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D CBP33_18935 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D CBP33_16420 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D CBP33_16640 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D CBP33_17005 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CBP33_00430 ArgP/LysG family DNA-binding transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D CBP33_07855 ArgP/LysG family DNA-binding transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D CBP33_07800 transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D CBP33_09345 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D CBP33_09080 transcriptional regulator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D CBP33_18150 LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D CBP33_16820 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D CBP33_10905 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D CBP33_05215 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D CBP33_02815 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D CBP33_18050 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D CBP33_06260 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D CBP33_01085 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
D CBP33_16975 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
C GntR family
D CBP33_01975 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D CBP33_06310 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D CBP33_04485 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CBP33_05910 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CBP33_08135 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D CBP33_04550 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D CBP33_02690 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D CBP33_01890 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D CBP33_02490 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CBP33_10650 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CBP33_11205 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CBP33_15485 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CBP33_18265 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D CBP33_09610 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D CBP33_02150 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D CBP33_05355 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D CBP33_07100 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D CBP33_07040 Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D CBP33_00160 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D CBP33_17635 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D CBP33_16725 hypothetical protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D CBP33_03875 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D CBP33_08930 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CBP33_18605 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CBP33_01735 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CBP33_02090 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CBP33_07650 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CBP33_04585 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D CBP33_16635 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CBP33_10205 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CBP33_07885 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D CBP33_14610 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D CBP33_01550 Cro/Cl family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D CBP33_03260 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D CBP33_17925 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CBP33_03700 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CBP33_11750 antitoxin K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D CBP33_05785 histidine kinase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CBP33_06430 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D CBP33_07475 transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D CBP33_11210 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D CBP33_04720 4Fe-4S binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D CBP33_08705 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D CBP33_00225 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CBP33_07435 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CBP33_14690 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D CBP33_06245 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D CBP33_08980 GNAT family N-acetyltransferase K06140 rnk; regulator of nucleoside diphosphate kinase
D CBP33_00880 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CBP33_03775 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CBP33_14510 hypothetical protein K07733 alpA; prophage regulatory protein
D CBP33_08880 transcriptional regulator K07734 paiB; transcriptional regulator
D CBP33_03765 hypothetical protein K07735 algH; putative transcriptional regulator
D CBP33_06800 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D CBP33_16615 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
D CBP33_02970 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D CBP33_12605 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D CBP33_02990 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0