+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acidovorax carolinensis P3

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CBP35_09210 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CBP35_14760 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CBP35_01630 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CBP35_03815 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CBP35_10555 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E CBP35_07685 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CBP35_03440 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CBP35_05340 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CBP35_09210 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CBP35_14760 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CBP35_01630 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CBP35_00915 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CBP35_11880 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CBP35_09215 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CBP35_03815 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CBP35_16595 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CBP35_03805 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CBP35_10555 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CBP35_17715 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CBP35_05770 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CBP35_04070 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CBP35_19590 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CBP35_09710 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CBP35_04360 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CBP35_00460 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CBP35_02785 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CBP35_08795 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E CBP35_10350 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CBP35_09015 endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-] E CBP35_04320 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CBP35_08895 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CBP35_19530 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CBP35_04360 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CBP35_09710 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CBP35_16895 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CBP35_16890 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CBP35_01815 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CBP35_03860 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CBP35_10455 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E CBP35_10055 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E CBP35_09825 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CBP35_12790 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CBP35_18940 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CBP35_09885 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E CBP35_01070 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CBP35_08005 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CBP35_19680 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CBP35_18860 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CBP35_02750 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase E CBP35_09710 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CBP35_04320 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CBP35_08895 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CBP35_19530 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CBP35_21325 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CBP35_13480 restriction endonuclease subunit M K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CBP35_00475 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CBP35_00700 recombinase RecA K03553 recA; recombination protein RecA E CBP35_16250 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CBP35_16225 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CBP35_15100 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CBP35_02040 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CBP35_04750 primosomal replication protein N K02686 priB; primosomal replication protein N E CBP35_10055 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E CBP35_00700 recombinase RecA K03553 recA; recombination protein RecA E CBP35_17900 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CBP35_00580 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CBP35_19550 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CBP35_18995 MloB K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CBP35_04070 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CBP35_19590 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CBP35_04615 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CBP35_06190 recombination protein RecR K06187 recR; recombination protein RecR E CBP35_03825 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CBP35_19535 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E CBP35_18825 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E CBP35_16250 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CBP35_16225 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CBP35_15100 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CBP35_10185 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CBP35_18935 DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F CBP35_13395 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F CBP35_21190 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F CBP35_10335 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CBP35_04070 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CBP35_19590 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CBP35_04615 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CBP35_06190 recombination protein RecR K06187 recR; recombination protein RecR F CBP35_09710 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CBP35_14820 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F CBP35_07920 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F CBP35_10215 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F CBP35_10055 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F CBP35_00460 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CBP35_02785 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CBP35_08795 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F CBP35_13755 histone K03746 hns; DNA-binding protein H-NS F CBP35_20095 histone K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CBP35_20885 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D CBP35_09010 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D CBP35_19415 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D CBP35_09020 peptidase K03503 umuD; DNA polymerase V [EC:3.4.21.-] D CBP35_19410 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D CBP35_19035 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D CBP35_00700 recombinase RecA K03553 recA; recombination protein RecA D CBP35_09865 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CBP35_03825 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CBP35_08420 hypothetical protein K14160 imuA; protein ImuA D CBP35_08425 hypothetical protein K14161 imuB; protein ImuB D CBP35_21325 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CBP35_00695 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CBP35_02015 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CBP35_18895 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D CBP35_03440 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CBP35_05340 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CBP35_14940 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CBP35_16705 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CBP35_14945 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024