+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acinetobacter sp. TGL-Y2

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AMD27_03455 glycosyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AMD27_05320 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AMD27_09600 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMD27_15785 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMD27_04725 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AMD27_05235 dGTP triphosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_14160 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_08420 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_02110 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_03615 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AMD27_03455 glycosyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AMD27_05320 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AMD27_09600 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMD27_15785 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMD27_15800 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AMD27_12760 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AMD27_04725 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AMD27_15350 DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AMD27_15250 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AMD27_12580 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AMD27_02830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AMD27_14970 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AMD27_06515 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AMD27_01360 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AMD27_02180 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMD27_02830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AMD27_12580 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AMD27_01240 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AMD27_01245 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AMD27_13955 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AMD27_01580 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AMD27_08785 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AMD27_06230 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E AMD27_09720 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AMD27_06340 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AMD27_08410 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AMD27_06335 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E AMD27_08415 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E AMD27_10670 DNA polymerase III subunit epsilon K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E AMD27_06445 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AMD27_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AMD27_00955 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E AMD27_13545 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AMD27_09645 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AMD27_04925 DNA polymerase III subunit epsilon K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7] E AMD27_07175 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AMD27_12580 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AMD27_02180 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMD27_14940 recombinase RecB K03111 ssb; single-strand DNA-binding protein E AMD27_16710 hypothetical protein K03111 ssb; single-strand DNA-binding protein E AMD27_16895 hypothetical protein K03111 ssb; single-strand DNA-binding protein E AMD27_17125 hypothetical protein K03111 ssb; single-strand DNA-binding protein E AMD27_17130 hypothetical protein K03111 ssb; single-strand DNA-binding protein E AMD27_08500 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E AMD27_13140 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AMD27_14500 exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E AMD27_14505 exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E AMD27_14495 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AMD27_08835 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E AMD27_10580 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMD27_10585 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMD27_09385 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AMD27_14440 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AMD27_03680 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AMD27_03685 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AMD27_08835 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E AMD27_11170 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AMD27_00015 DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF E AMD27_14150 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AMD27_15250 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AMD27_05925 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AMD27_07430 recR; recombination protein RecR K06187 recR; recombination protein RecR E AMD27_01420 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AMD27_10580 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMD27_10585 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMD27_09385 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E AMD27_03680 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AMD27_03685 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E AMD27_14100 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AMD27_11095 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AMD27_00020 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AMD27_02165 DNA topoisomerase I subunit omega K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AMD27_08725 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AMD27_15250 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AMD27_05925 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AMD27_07430 recR; recombination protein RecR K06187 recR; recombination protein RecR F AMD27_12580 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F AMD27_09895 DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F AMD27_02785 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F AMD27_09570 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F AMD27_14970 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AMD27_06515 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F AMD27_17725 hypothetical protein K03746 hns; DNA-binding protein H-NS F AMD27_01145 DNA-binding protein K03746 hns; DNA-binding protein H-NS F AMD27_16265 hypothetical protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AMD27_00820 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AMD27_08585 DNA methylase K03502 umuC; DNA polymerase V D AMD27_08580 DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D AMD27_08835 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D AMD27_01420 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AMD27_14940 recombinase RecB K03111 ssb; single-strand DNA-binding protein D AMD27_16710 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AMD27_16895 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AMD27_17125 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AMD27_17130 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AMD27_08840 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AMD27_03610 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D AMD27_06330 DNA helicase UvrD K03658 helD; DNA helicase IV [EC:5.6.2.4] D AMD27_16445 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D AMD27_16930 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D AMD27_05235 dGTP triphosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_14160 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_08420 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_02110 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMD27_03615 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AMD27_12395 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMD27_12400 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024