+F Repair protein KO #

  DNA Repair and Recombination Proteins - Alloalcanivorax dieselolei

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D B5T_00446 ogt; Methylated-DNA-protein-cysteine methyltransferase ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B5T_00449 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B5T_00105 phrB; Deoxyribodipyrimidine photolyase family K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E B5T_01523 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E B5T_00761 mutY; A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E B5T_02968 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E B5T_01391 Helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D B5T_03477 MutT/nudix family protein/thiamine-phosphatepyrophosphorylase, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B5T_00188 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D B5T_00446 ogt; Methylated-DNA-protein-cysteine methyltransferase ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B5T_00449 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B5T_04091 Fused DNA-binding transcriptional dual regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D B5T_00105 phrB; Deoxyribodipyrimidine photolyase family K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E B5T_01523 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E B5T_00448 Transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E B5T_00761 mutY; A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E B5T_00016 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E B5T_00215 mutM; Formamidopyrimidine-DNA glycosylase 2 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E B5T_02968 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E B5T_02664 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E B5T_04236 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E B5T_01518 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E B5T_01775 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E B5T_04329 polA; DNA polymerase I superfamily K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E B5T_03762 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E B5T_01762 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E B5T_02033 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E B5T_04373 uvrD; UvrD/REP helicase domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B5T_04329 polA; DNA polymerase I superfamily K02335 polA; DNA polymerase I [EC:2.7.7.7] E B5T_01775 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F B5T_03802 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F B5T_03801 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F B5T_03770 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F B5T_00166 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F B5T_01837 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E B5T_03134 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E B5T_00772 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E B5T_01202 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E B5T_00868 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E B5T_01936 dnaE; DNA polymerase III, alpha subunit subfamily, putative K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E B5T_00002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E B5T_03684 holC; DNA polymerase III, chi subunit superfamily K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E B5T_01086 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E B5T_02725 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E B5T_00880 Exonuclease superfamily K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E B5T_02366 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E B5T_03009 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E B5T_01775 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E B5T_04373 uvrD; UvrD/REP helicase domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B5T_02139 single-stranded DNA binding protein-like protein K03111 ssb; single-strand DNA-binding protein E B5T_03759 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E B5T_02150 Putative n6 adenine-specific dna methyltransferase protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E B5T_01249 DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E B5T_03148 recB; Exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E B5T_03147 recC; Exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E B5T_03149 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E B5T_03101 recA; Recombinase A K03553 recA; recombination protein RecA E B5T_03232 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E B5T_03231 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E B5T_03233 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E B5T_03988 priA; Replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E B5T_00791 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N E B5T_02330 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E B5T_03101 recA; Recombinase A K03553 recA; recombination protein RecA E B5T_00796 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E B5T_00003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E B5T_00150 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E B5T_03111 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E B5T_01518 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E B5T_01540 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E B5T_03007 recR; Recombination protein recR K06187 recR; recombination protein RecR E B5T_03876 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E B5T_00428 rdgC; Putative exonuclease, RdgC superfamily K03554 rdgC; recombination associated protein RdgC E B5T_03232 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E B5T_03231 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E B5T_03233 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E B5T_03545 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E B5T_02330 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E B5T_00057 Putative ATPase family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F B5T_02980 gyrA; DNA gyrase subunit A-like protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F B5T_00004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F B5T_01820 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F B5T_02378 dbh1; Histone-like bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F B5T_01518 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F B5T_01540 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F B5T_03007 recR; Recombination protein recR K06187 recR; recombination protein RecR F B5T_01775 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F B5T_01010 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F B5T_03198 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F B5T_02973 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F B5T_03250 recQ1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F B5T_03762 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F B5T_01762 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F B5T_00005 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D B5T_03341 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D B5T_03101 recA; Recombinase A K03553 recA; recombination protein RecA D B5T_01817 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D B5T_03876 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D B5T_02449 SOS cell division inhibitor SulA K14160 imuA; protein ImuA D B5T_02450 dinP; Nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D B5T_02452 Error-prone DNA polymerase 2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D B5T_02139 single-stranded DNA binding protein-like protein K03111 ssb; single-strand DNA-binding protein D B5T_03759 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D B5T_03100 recX; Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D B5T_04194 rep; UvrD/REP helicase subfamily K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D B5T_01906 yoaA; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D B5T_03477 MutT/nudix family protein/thiamine-phosphatepyrophosphorylase, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B5T_00188 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D B5T_03277 nrdA; Ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D B5T_03278 nrdB; Ribonucleoside reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024