+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Arcobacter ellisii</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      AELL_2155 ogt; O6-alkylguanine-DNA-alkyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      AELL_1690 phrB; deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        AELL_2785 ung; uracil-DNA glycosylase, family 1	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        AELL_0811 nth; endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
E        AELL_2084 putative Rad52/22 family double-strand break repair protein	K10873 RAD52; DNA repair and recombination protein RAD52 
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      AELL_2508 Nudix domain-containing protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      AELL_0947 putative ADP-ribose pyrophosphatase YjhB, Nudix family	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
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A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      AELL_2155 ogt; O6-alkylguanine-DNA-alkyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      AELL_1849 ada; O6-methylguanine-DNA methyltransferase	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
D      AELL_1690 phrB; deoxyribodipyrimidine photolyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
D      AELL_0760 deoxyribodipyrimidine photolyase-related protein	K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] 
C    BER (base exicision repair)
D      DNA glycosylases
E        AELL_2785 ung; uracil-DNA glycosylase, family 1	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        AELL_0923 uracil-DNA glycosylase, family 4	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] 
E        AELL_0811 nth; endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        AELL_0967 xth; exodeoxyribonuclease III (exonuclease III)	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        AELL_2721 nfo; endonuclease IV	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] 
D      RecJ
E        AELL_2751 recJ; single-stranded DNA-specific exonuclease	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
D      DNA ligase
E        AELL_1596 ligA; DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        AELL_1101 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA	K03701 uvrA; excinuclease ABC subunit A 
E        AELL_0810 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB	K03702 uvrB; excinuclease ABC subunit B 
E        AELL_0934 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC	K03703 uvrC; excinuclease ABC subunit C 
E        AELL_2574 UvrD/REP family helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AELL_0704 rep; ATP-dependent DNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AELL_1596 ligA; DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          AELL_2458 rpoB; DNA-directed RNA polymerase, beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          AELL_2457 rpoC; DNA-directed RNA polymerase, beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          AELL_1725 rpoA; DNA-directed RNA polymerase, alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
F          AELL_0827 rpoZ; DNA-directed RNA polymerase, omega subunit	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          AELL_0548 mfd; transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
E        AELL_0616 mutS; DNA mismatch repair ATPase	K03555 mutS; DNA mismatch repair protein MutS 
E        AELL_1674 mutS2; DNA mismatch binding protein, MutS2 family	K07456 mutS2; DNA mismatch repair protein MutS2 
D      Molecular matchmaker
D      Strand discrimination factor
D      DNA exonucleases
E        AELL_0565 xseA; exodeoxyribonuclease VII, large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
E        AELL_1157 xseB; exodeoxyribonuclease VII, small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] 
E        AELL_1548 DEDDh 3'-5' exonuclease domain family protein	K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] 
D      DNA polymerase III holoenzyme
E        AELL_2757 dnaE; DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        AELL_0002 dnaN; DNA polymerase III, beta subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        AELL_0387 holA; DNA polymerase III, delta subunit	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        AELL_1476 holB; DNA polymerase III, delta prime subunit	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        AELL_0648 dnaQ1; DNA polymerase III, epsilon subunit	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        AELL_0654 dnaQ2; DNA polymerase III, epsilon subunit	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        AELL_0998 dnaQ3; DNA polymerase III, epsilon subunit	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        AELL_1692 DEDDh 3'-5' exonuclease domain family protein	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        AELL_0428 dnaX; DNA polymerase III, gamma and tau subunits	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      DNA ligase
E        AELL_1596 ligA; DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        AELL_2574 UvrD/REP family helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AELL_0704 rep; ATP-dependent DNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        AELL_0389 ssb; single-stranded DNA binding protein	K03111 ssb; single-strand DNA-binding protein 
E        AELL_1324 hypothetical protein	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        AELL_2521 addA; AddAB recombination complex, helicase AddA	K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] 
E        AELL_1146 helicase, RecD/TraA family (non-RecBCD)	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        AELL_2688 recA; recombinase	K03553 recA; recombination protein RecA 
E        AELL_0892 ruvA; RuvABC resolvasome, subunit RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        AELL_2171 ruvB; RuvABC resolvasome, subunit RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        AELL_2853 ruvC; RuvABC resolvasome, subunit RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
E        AELL_1754 priA; primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
E        AELL_1361 SbcCD-like exonuclease, ATPase subunit	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        AELL_1360 SbcCD-like exonuclease, nuclease subunit	K03547 sbcD; DNA repair protein SbcD/Mre11 
D      RecFOR pathway proteins
E        AELL_2688 recA; recombinase	K03553 recA; recombination protein RecA 
E        AELL_1026 radA; DNA repair and recombination protein	K04485 radA; DNA repair protein RadA/Sms 
E        AELL_2751 recJ; single-stranded DNA-specific exonuclease	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        AELL_1580 recR; recombination protein	K06187 recR; recombination protein RecR 
E        AELL_2399 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        AELL_0892 ruvA; RuvABC resolvasome, subunit RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        AELL_2171 ruvB; RuvABC resolvasome, subunit RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        AELL_2853 ruvC; RuvABC resolvasome, subunit RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
D      AddAB pathway proteins
E        AELL_2563 addB; AddAB recombination complex, helicase AddB	K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] 
D      Other HR factor
D      Archaeal homologous recombinant proteins
E        AELL_1361 SbcCD-like exonuclease, ATPase subunit	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        AELL_1360 SbcCD-like exonuclease, nuclease subunit	K03547 sbcD; DNA repair protein SbcD/Mre11 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          AELL_2190 gyrA; DNA gyrase, subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          AELL_0003 gyrB; DNA gyrase, subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          AELL_2695 topA; DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
F          AELL_1263 hup; DNA-binding protein HU	K03530 hupB; DNA-binding protein HU-beta 
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          AELL_2751 recJ; single-stranded DNA-specific exonuclease	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          AELL_1580 recR; recombination protein	K06187 recR; recombination protein RecR 
F          AELL_1596 ligA; DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
E        Supressor
F          AELL_0443 recQ; ATP-dependent DNA helicase	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          AELL_1101 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA	K03701 uvrA; excinuclease ABC subunit A 
F          AELL_0810 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB	K03702 uvrB; excinuclease ABC subunit B 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      AELL_1863 dinP; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
C    Other SOS response factors
D      AELL_2688 recA; recombinase	K03553 recA; recombination protein RecA 
D      AELL_2399 recN; DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      AELL_0389 ssb; single-stranded DNA binding protein	K03111 ssb; single-strand DNA-binding protein 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
C    DNA helicases
C    Modulation of nucleotide pools
D      AELL_2508 Nudix domain-containing protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      AELL_0947 putative ADP-ribose pyrophosphatase YjhB, Nudix family	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      AELL_0063 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      AELL_0064 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
C    Others
D      AELL_2555 nrnA; nanoRNase / pAp phosphatase	K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] 
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#Last updated: March 29, 2024