+D GENES KO
#
KEGG Orthology (KO) - Acidithiobacillus ferridurans
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:afj00010]
D AFERRID_07920 N-acetyl-D-glucosamine kinase K25026 glk; glucokinase [EC:2.7.1.2]
D AFERRID_08720 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D AFERRID_27760 ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D AFERRID_12190 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D AFERRID_15370 Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D AFERRID_15420 Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_24640 putative fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_27730 Fructose-bisphosphate aldolase class 1 K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11]
D AFERRID_05880 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D AFERRID_15390 Glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D AFERRID_15400 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D AFERRID_17550 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AFERRID_27840 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AFERRID_07540 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_20840 Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_15410 Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_19840 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_27720 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_27850 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AFERRID_10170 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_27820 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_10160 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27810 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27800 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_19310 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_27350 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_02290 putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D AFERRID_20810 Aldehyde reductase YahK K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D AFERRID_29640 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AFERRID_03990 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D AFERRID_00660 Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
C 00020 Citrate cycle (TCA cycle) [PATH:afj00020]
D AFERRID_10130 Citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D AFERRID_16590 2,3-dimethylmalate dehydratase large subunit K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D AFERRID_16600 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_16630 Succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AFERRID_16610 Succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AFERRID_06340 Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AFERRID_10170 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_27820 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_10160 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27810 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27800 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:afj00030]
D AFERRID_08720 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D AFERRID_00640 Glucose-6-phosphate 1-dehydrogenase 1 K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_01200 Glucose-6-phosphate 1-dehydrogenase 1 K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_30130 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_07850 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D AFERRID_00630 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D AFERRID_30120 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D AFERRID_15430 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D AFERRID_00620 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D AFERRID_15380 Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D AFERRID_16500 Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D AFERRID_18610 Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D AFERRID_00550 Xylulose-5-phosphate phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D AFERRID_03990 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D AFERRID_07160 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D AFERRID_00840 Glucose 1-dehydrogenase 1 K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47]
D AFERRID_29480 Glucose 1-dehydrogenase 1 K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47]
D AFERRID_15420 Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_24640 putative fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_27730 Fructose-bisphosphate aldolase class 1 K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11]
D AFERRID_12190 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D AFERRID_15370 Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D AFERRID_27760 ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:afj00040]
D AFERRID_18500 UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_22330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_07300 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_16810 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_06030 L-fuculose phosphate aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D AFERRID_15430 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:afj00051]
D AFERRID_23680 Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D AFERRID_09100 Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D AFERRID_14940 Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D AFERRID_21610 Phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D AFERRID_09210 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D AFERRID_14950 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D AFERRID_27760 ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D AFERRID_12190 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D AFERRID_15370 Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D AFERRID_15420 Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_24640 putative fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_27730 Fructose-bisphosphate aldolase class 1 K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11]
D AFERRID_05880 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D AFERRID_14960 GDP-6-deoxy-D-mannose reductase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D AFERRID_09660 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:afj00052]
D AFERRID_03970 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D AFERRID_04590 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D AFERRID_07300 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_16810 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_03990 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D AFERRID_07920 N-acetyl-D-glucosamine kinase K25026 glk; glucokinase [EC:2.7.1.2]
D AFERRID_27760 ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
C 00053 Ascorbate and aldarate metabolism [PATH:afj00053]
D AFERRID_18500 UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_22330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_18400 UDP-N-acetylglucosamine 4-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D AFERRID_29610 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D AFERRID_06030 L-fuculose phosphate aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:afj00500]
D AFERRID_23690 Mannosylfructose-phosphate synthase K00696 sps; sucrose-phosphate synthase [EC:2.4.1.14]
D AFERRID_23700 Mannosylfructose-phosphate synthase K00695 SUS; sucrose synthase [EC:2.4.1.13]
D AFERRID_07300 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_16810 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_07890 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D AFERRID_06390 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D AFERRID_07880 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D AFERRID_17560 Maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D AFERRID_27700 Glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D AFERRID_00830 Glucoamylase K01178 SGA1; glucoamylase [EC:3.2.1.3]
D AFERRID_29490 Glucoamylase K01178 SGA1; glucoamylase [EC:3.2.1.3]
D AFERRID_07910 Alpha-amylase 1 K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25]
D AFERRID_03990 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D AFERRID_07920 N-acetyl-D-glucosamine kinase K25026 glk; glucokinase [EC:2.7.1.2]
D AFERRID_08720 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D AFERRID_23680 Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00620 Pyruvate metabolism [PATH:afj00620]
D AFERRID_29640 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AFERRID_10170 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_27820 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_10160 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27810 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27800 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_02290 putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D AFERRID_19310 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_27350 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_20810 Aldehyde reductase YahK K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D AFERRID_00540 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_27790 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_15410 Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_19840 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_27720 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_22850 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D AFERRID_12120 Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D AFERRID_12130 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D AFERRID_02140 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D AFERRID_16070 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D AFERRID_16400 Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D AFERRID_16350 Hydroxyacylglutathione hydrolase GloB K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D AFERRID_18990 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AFERRID_06340 Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D AFERRID_28520 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AFERRID_27850 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AFERRID_05560 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D AFERRID_29820 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D AFERRID_23260 2-isopropylmalate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:afj00630]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AFERRID_10130 Citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D AFERRID_16590 2,3-dimethylmalate dehydratase large subunit K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D AFERRID_29640 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AFERRID_24520 putative FAD-linked oxidoreductase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D AFERRID_24510 putative FAD-linked oxidoreductase K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D AFERRID_24500 Lactate utilization protein A K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D AFERRID_03340 Pyrophosphatase PpaX K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D AFERRID_15440 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D AFERRID_02890 Ribulose bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AFERRID_09990 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AFERRID_24800 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AFERRID_10000 Ribulose bisphosphate carboxylase small chain 1 K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D AFERRID_24790 Ribulose bisphosphate carboxylase small chain 1 K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D AFERRID_17010 3-hydroxylaminophenol mutase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AFERRID_11040 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D AFERRID_21910 putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D AFERRID_21920 putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D AFERRID_21880 Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_05070 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_05090 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_08210 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_21890 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00640 Propanoate metabolism [PATH:afj00640]
D AFERRID_29640 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AFERRID_00540 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_27790 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_22850 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D AFERRID_12120 Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D AFERRID_12130 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D AFERRID_02140 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D AFERRID_16610 Succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AFERRID_16630 Succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AFERRID_10130 Citrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D AFERRID_16590 2,3-dimethylmalate dehydratase large subunit K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:afj00650]
D AFERRID_01060 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D AFERRID_23640 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D AFERRID_19790 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AFERRID_19800 Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:afj00660]
D AFERRID_19790 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AFERRID_19800 Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D AFERRID_16610 Succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AFERRID_16630 Succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AFERRID_18570 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D AFERRID_18580 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D AFERRID_02210 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:afj00562]
D AFERRID_15360 Fructose-1,6-bisphosphatase/inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D AFERRID_19090 Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D AFERRID_05880 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00566 Sulfoquinovose metabolism [PATH:afj00566]
D AFERRID_26090 UDP-glucose 4-epimerase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:afj00190]
D AFERRID_00680 NAD(P)H-quinone oxidoreductase subunit 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D AFERRID_05860 NAD(P)H-quinone oxidoreductase subunit 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D AFERRID_00690 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D AFERRID_05850 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D AFERRID_05840 NADH-quinone oxidoreductase chain 5 K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D AFERRID_05830 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D AFERRID_00700 NADH-quinone oxidoreductase subunit C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D AFERRID_00710 NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D AFERRID_05820 NADH-quinone oxidoreductase subunit 2 K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D AFERRID_00720 NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D AFERRID_05800 NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D AFERRID_00730 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D AFERRID_05790 NADH-quinone oxidoreductase chain 3 K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D AFERRID_00740 NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D AFERRID_05780 NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D AFERRID_00750 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D AFERRID_05770 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D AFERRID_00760 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D AFERRID_05760 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D AFERRID_00770 NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D AFERRID_05750 NADH-quinone oxidoreductase subunit 11 K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D AFERRID_00780 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D AFERRID_05740 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D AFERRID_00790 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D AFERRID_05730 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D AFERRID_00800 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D AFERRID_05720 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D AFERRID_29450 NADH dehydrogenase-like protein YjlD K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D AFERRID_06830 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D AFERRID_13980 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D AFERRID_06840 Cytochrome b/c1 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D AFERRID_13990 Cytochrome b/c1 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D AFERRID_06850 Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D AFERRID_14000 hypothetical protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D AFERRID_14320 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D AFERRID_18750 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D AFERRID_18740 hypothetical protein K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D AFERRID_14370 hypothetical protein K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D AFERRID_14380 Quinol oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D AFERRID_14390 Alternative cytochrome c oxidase subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D AFERRID_18730 Cytochrome bo(3) ubiquinol oxidase subunit 3 K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D AFERRID_18720 Cytochrome bo(3) ubiquinol oxidase subunit 1 K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D AFERRID_18710 Cytochrome bo(3) ubiquinol oxidase subunit 2 K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D AFERRID_18640 Cytochrome bd-I ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D AFERRID_21720 Cytochrome bd ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D AFERRID_18650 Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D AFERRID_21710 Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D AFERRID_20540 Cytochrome c-552 K08738 CYC; cytochrome c
D AFERRID_29570 Cytochrome c-552 K08738 CYC; cytochrome c
D AFERRID_16010 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D AFERRID_16030 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D AFERRID_16020 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D AFERRID_16000 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D AFERRID_16040 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D AFERRID_19910 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D AFERRID_15970 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D AFERRID_15990 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D AFERRID_15980 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D AFERRID_00560 Calcium-transporting ATPase K01535 PMA1; H+-transporting ATPase [EC:7.1.2.1]
D AFERRID_16250 Calcium-transporting ATPase 1 K01535 PMA1; H+-transporting ATPase [EC:7.1.2.1]
D AFERRID_20580 Calcium-transporting ATPase 1 K01535 PMA1; H+-transporting ATPase [EC:7.1.2.1]
D AFERRID_20630 putative cation-transporting ATPase F K01535 PMA1; H+-transporting ATPase [EC:7.1.2.1]
D AFERRID_17260 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D AFERRID_28450 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D AFERRID_28610 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:afj00710]
D AFERRID_02890 Ribulose bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AFERRID_09990 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AFERRID_24800 Ribulose bisphosphate carboxylase large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AFERRID_10000 Ribulose bisphosphate carboxylase small chain 1 K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D AFERRID_24790 Ribulose bisphosphate carboxylase small chain 1 K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D AFERRID_15400 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D AFERRID_15390 Glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D AFERRID_15420 Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_24640 putative fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_12190 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D AFERRID_15370 Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D AFERRID_00620 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D AFERRID_15380 Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D AFERRID_18610 Ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D AFERRID_17640 Phosphoribulokinase, chromosomal K28462 prkA_B; phosphoribulokinase [EC:2.7.1.19]
D AFERRID_05880 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D AFERRID_15430 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D AFERRID_16500 Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D AFERRID_28520 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AFERRID_18990 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:afj00720]
D AFERRID_27850 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AFERRID_28520 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AFERRID_06340 Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D AFERRID_16630 Succinate--CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AFERRID_16610 Succinate--CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AFERRID_16600 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D AFERRID_16590 2,3-dimethylmalate dehydratase large subunit K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D AFERRID_22850 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D AFERRID_12120 Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D AFERRID_12130 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D AFERRID_02140 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D AFERRID_28460 Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D AFERRID_17630 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D AFERRID_00540 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_27790 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_29640 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:afj00680]
D AFERRID_19300 Glutathione-dependent formaldehyde-activating enzyme K03396 gfa; S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22]
D AFERRID_19310 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_27350 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_19320 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D AFERRID_27340 S-formylglutathione hydrolase FrmB K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D AFERRID_11040 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D AFERRID_07540 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_20840 Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_28520 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AFERRID_15420 Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_24640 putative fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D AFERRID_27730 Fructose-bisphosphate aldolase class 1 K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11]
D AFERRID_12190 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D AFERRID_15370 Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D AFERRID_27760 ATP-dependent 6-phosphofructokinase isozyme 2 K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D AFERRID_00540 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_27790 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_29640 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AFERRID_27850 Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AFERRID_17550 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AFERRID_27840 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AFERRID_21180 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D AFERRID_10390 Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:afj00910]
D AFERRID_20980 Nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D AFERRID_20940 Nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D AFERRID_20960 Nitrite reductase [NAD(P)H] K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D AFERRID_20950 Assimilatory nitrite reductase [NAD(P)H] small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4]
D AFERRID_23410 Nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
D AFERRID_23400 Nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D AFERRID_23420 Nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D AFERRID_24450 Hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D AFERRID_06800 hypothetical protein K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D AFERRID_17010 3-hydroxylaminophenol mutase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AFERRID_19650 Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D AFERRID_19640 Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D AFERRID_11110 Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D AFERRID_25430 Beta-carbonic anhydrase 1 K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D AFERRID_24760 hypothetical protein K28955 csoS3; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:afj00920]
D AFERRID_14150 Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D AFERRID_14140 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D AFERRID_17670 putative bifunctional SAT/APS kinase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D AFERRID_14130 Thioredoxin-dependent 5'-adenylylsulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D AFERRID_14110 Sulfite reductase [NADPH] flavoprotein alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D AFERRID_14120 Sulfite reductase [NADPH] hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D AFERRID_00190 Sulfide-quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D AFERRID_05600 Sulfide-quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D AFERRID_11380 Sulfide-quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D AFERRID_14070 Sulfide-quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D AFERRID_27630 Sulfide-quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D AFERRID_13740 hypothetical protein K05908 doxDA; thiosulfate dehydrogenase (quinone) [EC:1.8.5.2]
D AFERRID_13780 hypothetical protein K05908 doxDA; thiosulfate dehydrogenase (quinone) [EC:1.8.5.2]
D AFERRID_13930 Outer membrane protein assembly factor BamB K27925 tetH; tetrathionate hydrolase [EC:3.12.1.2]
D AFERRID_19110 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D AFERRID_23250 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D AFERRID_11060 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D AFERRID_02100 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D AFERRID_23190 Toluene-4-monooxygenase system ferredoxin subunit K15762 tmoC; toluene monooxygenase system ferredoxin subunit
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:afj00061]
D AFERRID_22850 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D AFERRID_12120 Biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D AFERRID_12130 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D AFERRID_02140 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D AFERRID_20340 Acyl carrier protein K02078 acpP; acyl carrier protein
D AFERRID_28780 Acyl carrier protein K02078 acpP; acyl carrier protein
D AFERRID_28750 Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D AFERRID_28740 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D AFERRID_20330 3-oxoacyl-[acyl-carrier-protein] synthase 2 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D AFERRID_28790 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D AFERRID_20310 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_28770 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_22780 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D AFERRID_16510 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D AFERRID_11890 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:afj00071]
D AFERRID_11890 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D AFERRID_21020 Putidaredoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D AFERRID_19310 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_27350 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_02290 putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:afj00074]
D AFERRID_22320 Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D AFERRID_20340 Acyl carrier protein K02078 acpP; acyl carrier protein
D AFERRID_28780 Acyl carrier protein K02078 acpP; acyl carrier protein
D AFERRID_28750 Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:afj00561]
D AFERRID_20810 Aldehyde reductase YahK K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D AFERRID_28730 Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D AFERRID_12980 putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D AFERRID_05430 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D AFERRID_13640 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D AFERRID_22480 Alpha-monoglucosyldiacylglycerol synthase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D AFERRID_26090 UDP-glucose 4-epimerase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
C 00564 Glycerophospholipid metabolism [PATH:afj00564]
D AFERRID_02600 Glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D AFERRID_12980 putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D AFERRID_05430 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D AFERRID_13640 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D AFERRID_06920 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D AFERRID_18260 Ribosomal RNA small subunit methyltransferase A K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D AFERRID_22720 Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D AFERRID_19830 Phosphatidylcholine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D AFERRID_19820 Phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D AFERRID_20890 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D AFERRID_21470 Phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D AFERRID_11270 Major cardiolipin synthase ClsA K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D AFERRID_28680 Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase 2 K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
D AFERRID_05040 hypothetical protein K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:afj00230]
D AFERRID_03990 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D AFERRID_07160 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D AFERRID_02110 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D AFERRID_03710 Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D AFERRID_28650 Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D AFERRID_30100 Formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D AFERRID_04260 Phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D AFERRID_28660 Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D AFERRID_11320 N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D AFERRID_11330 N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D AFERRID_04270 Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D AFERRID_04280 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D AFERRID_03700 Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D AFERRID_17030 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D AFERRID_16680 Laccase domain protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D AFERRID_10430 Hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D AFERRID_25670 Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D AFERRID_28960 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D AFERRID_04120 dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D AFERRID_07440 Putative xanthine dehydrogenase YagS FAD-binding subunit K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D AFERRID_07460 Carbon monoxide dehydrogenase small chain K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D AFERRID_04900 hypothetical protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AFERRID_25680 GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AFERRID_20040 Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D AFERRID_17880 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D AFERRID_05940 Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AFERRID_05950 Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D AFERRID_06730 Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D AFERRID_19670 Deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D AFERRID_17900 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D AFERRID_22650 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D AFERRID_28590 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D AFERRID_17590 Adenosine kinase K00856 ADK; adenosine kinase [EC:2.7.1.20]
D AFERRID_20050 Adenine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D AFERRID_02700 hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D AFERRID_10580 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D AFERRID_03120 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D AFERRID_14150 Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D AFERRID_14140 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D AFERRID_17670 putative bifunctional SAT/APS kinase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:afj00240]
D AFERRID_18790 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D AFERRID_18800 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D AFERRID_10060 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D AFERRID_10050 Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D AFERRID_22870 Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D AFERRID_24590 Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D AFERRID_03740 Dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D AFERRID_21290 Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D AFERRID_21280 Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D AFERRID_22690 Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D AFERRID_28960 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D AFERRID_09030 Maf-like protein YhdE K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D AFERRID_20820 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D AFERRID_21240 Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D AFERRID_17030 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D AFERRID_10070 Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D AFERRID_02700 hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D AFERRID_06730 Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D AFERRID_06210 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D AFERRID_05940 Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AFERRID_05950 Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D AFERRID_28820 Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D AFERRID_10510 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:afj00250]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_22200 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D AFERRID_16410 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D AFERRID_15100 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D AFERRID_28590 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D AFERRID_04280 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D AFERRID_10060 Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D AFERRID_01060 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D AFERRID_23640 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D AFERRID_19650 Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D AFERRID_19640 Glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D AFERRID_11130 Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D AFERRID_17010 3-hydroxylaminophenol mutase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AFERRID_18790 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D AFERRID_18800 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D AFERRID_16060 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D AFERRID_02110 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:afj00260]
D AFERRID_16440 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AFERRID_02200 Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AFERRID_17090 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D AFERRID_16170 Homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D AFERRID_17100 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D AFERRID_11040 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D AFERRID_17550 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AFERRID_27840 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AFERRID_21180 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D AFERRID_10390 Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D AFERRID_21910 putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D AFERRID_21920 putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D AFERRID_21880 Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_05070 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_05090 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_08210 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_21890 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_19830 Phosphatidylcholine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D AFERRID_19570 L-threonine dehydratase biosynthetic IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D AFERRID_02150 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D AFERRID_02160 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:afj00270]
D AFERRID_19110 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D AFERRID_23250 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D AFERRID_11700 Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D AFERRID_11100 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D AFERRID_17610 S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D AFERRID_12530 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D AFERRID_12540 Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D AFERRID_12600 Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D AFERRID_29920 Acyl-homoserine-lactone synthase K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184]
D AFERRID_16680 Laccase domain protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D AFERRID_27950 5-methylthioadenosine/S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D AFERRID_10420 S-methyl-5'-thioinosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D AFERRID_21160 Methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D AFERRID_16720 Methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D AFERRID_16700 2,3-diketo-5-methylthiopentyl-1-phosphate enolase K08965 mtnW; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [EC:5.3.2.5]
D AFERRID_16710 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87]
D AFERRID_16690 Acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D AFERRID_01410 Modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_25830 Modification methylase AplI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_17620 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AFERRID_16440 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AFERRID_02200 Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AFERRID_17090 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D AFERRID_11060 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D AFERRID_02100 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D AFERRID_17750 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AFERRID_10120 hypothetical protein K01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_09490 L-lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AFERRID_07840 Cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D AFERRID_21180 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:afj00280]
D AFERRID_17750 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:afj00290]
D AFERRID_19570 L-threonine dehydratase biosynthetic IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D AFERRID_18570 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D AFERRID_18580 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D AFERRID_02210 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D AFERRID_19790 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AFERRID_19800 Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D AFERRID_19810 Ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D AFERRID_19010 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D AFERRID_24600 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D AFERRID_17750 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AFERRID_05560 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D AFERRID_29820 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:afj00300]
D AFERRID_17090 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D AFERRID_16440 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AFERRID_02200 Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AFERRID_04300 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D AFERRID_06240 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D AFERRID_27890 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D AFERRID_16430 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D AFERRID_27900 LL-diaminopimelate aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D AFERRID_27880 Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D AFERRID_06950 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D AFERRID_15080 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D AFERRID_11960 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D AFERRID_11970 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:afj00310]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_23640 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D AFERRID_19540 D-amino acid dehydrogenase 1 K26064 amaD; D-lysine oxidase
C 00220 Arginine biosynthesis [PATH:afj00220]
D AFERRID_16420 Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D AFERRID_16410 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D AFERRID_15100 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D AFERRID_17010 3-hydroxylaminophenol mutase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AFERRID_18790 Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D AFERRID_18800 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_19040 Amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D AFERRID_11840 Arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D AFERRID_11520 Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D AFERRID_10200 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D AFERRID_16430 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:afj00330]
D AFERRID_22930 Biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D AFERRID_04860 N-carbamoyl-D-amino acid hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D AFERRID_15650 (R)-stereoselective amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D AFERRID_12540 Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D AFERRID_12600 Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D AFERRID_12530 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D AFERRID_11460 Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D AFERRID_11130 Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D AFERRID_03550 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D AFERRID_11230 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D AFERRID_27520 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D AFERRID_16900 Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D AFERRID_14280 hypothetical protein K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:afj00340]
D AFERRID_09880 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D AFERRID_28580 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D AFERRID_09950 Phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D AFERRID_09930 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D AFERRID_09920 Imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D AFERRID_09940 Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D AFERRID_09910 Histidine biosynthesis bifunctional protein HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D AFERRID_09900 Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_21200 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_19890 Phosphoserine phosphatase SerB1 K28842 E3.1.3.15; histidinol-phosphatase [EC:3.1.3.15]
D AFERRID_09890 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D AFERRID_10120 hypothetical protein K01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]
C 00350 Tyrosine metabolism [PATH:afj00350]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_09900 Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_21200 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_19310 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_27350 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_02290 putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D AFERRID_23640 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D AFERRID_22950 Fumarylpyruvate hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:afj00360]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_09900 Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_21200 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_21020 Putidaredoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:afj00400]
D AFERRID_06330 Phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D AFERRID_21210 Phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D AFERRID_22060 Phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D AFERRID_19680 3-dehydroquinate synthase K13829 aroKB; shikimate kinase / 3-dehydroquinate synthase [EC:2.7.1.71 4.2.3.4]
D AFERRID_27730 Fructose-bisphosphate aldolase class 1 K16305 K16305; fructose-bisphosphate aldolase / 6-deoxy-5-ketofructose 1-phosphate synthase [EC:4.1.2.13 2.2.1.11]
D AFERRID_12110 3-dehydroquinate dehydratase 1 K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D AFERRID_12280 Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D AFERRID_19690 Shikimate kinase 1 K00891 aroK; shikimate kinase [EC:2.7.1.71]
D AFERRID_21230 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D AFERRID_29670 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D AFERRID_15450 Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D AFERRID_15460 Aminodeoxychorismate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D AFERRID_15470 Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D AFERRID_02170 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D AFERRID_15480 Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D AFERRID_02150 Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D AFERRID_02160 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D AFERRID_21190 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D AFERRID_21220 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_09900 Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_21200 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_20270 3-hydroxybenzoate synthase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:afj00410]
D AFERRID_16240 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D AFERRID_01060 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D AFERRID_25600 Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:afj00430]
D AFERRID_01060 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D AFERRID_00540 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D AFERRID_27790 Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D AFERRID_22030 Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:afj00450]
D AFERRID_11700 Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D AFERRID_11100 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D AFERRID_10320 Glucosaminate ammonia-lyase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D AFERRID_14150 Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D AFERRID_14140 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D AFERRID_17670 putative bifunctional SAT/APS kinase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D AFERRID_06320 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D AFERRID_11040 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:afj00470]
D AFERRID_07710 Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D AFERRID_12040 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D AFERRID_07930 Glutamate racemase 2 K01776 murI; glutamate racemase [EC:5.1.1.3]
D AFERRID_11990 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D AFERRID_06950 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D AFERRID_15080 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:afj00480]
D AFERRID_10120 hypothetical protein K01919 gshA; glutamate---cysteine ligase [EC:6.3.2.2]
D AFERRID_10110 Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D AFERRID_03190 Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D AFERRID_28420 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D AFERRID_05540 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_11080 Stringent starvation protein A K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_22970 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_25060 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_26830 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_10410 Glutathione amide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D AFERRID_25020 Glutathione amide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D AFERRID_26790 Glutathione amide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D AFERRID_16600 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D AFERRID_00630 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D AFERRID_30120 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D AFERRID_00640 Glucose-6-phosphate 1-dehydrogenase 1 K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_01200 Glucose-6-phosphate 1-dehydrogenase 1 K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_30130 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_10400 Hybrid peroxiredoxin hyPrx5 K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D AFERRID_12540 Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D AFERRID_12600 Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:afj00520]
D AFERRID_12290 Anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D AFERRID_27930 Phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D AFERRID_09800 hypothetical protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D AFERRID_09790 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D AFERRID_16050 Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D AFERRID_09870 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D AFERRID_12030 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D AFERRID_07770 Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D AFERRID_05900 Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D AFERRID_16060 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D AFERRID_23680 Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D AFERRID_08720 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D AFERRID_09100 Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D AFERRID_14940 Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D AFERRID_18400 UDP-N-acetylglucosamine 4-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D AFERRID_29610 dTDP-glucose 4,6-dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D AFERRID_07920 N-acetyl-D-glucosamine kinase K25026 glk; glucokinase [EC:2.7.1.2]
D AFERRID_00660 Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D AFERRID_03990 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D AFERRID_07300 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_16810 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_18500 UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_22330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_26090 UDP-glucose 4-epimerase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D AFERRID_03970 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D AFERRID_04590 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D AFERRID_09660 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D AFERRID_21610 Phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D AFERRID_07890 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D AFERRID_14920 Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00541 Biosynthesis of various nucleotide sugars [PATH:afj00541]
D AFERRID_16050 Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D AFERRID_09760 Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D AFERRID_20830 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D AFERRID_09750 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D AFERRID_17250 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D AFERRID_19480 Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D AFERRID_05420 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D AFERRID_22340 D-beta-D-heptose 7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D AFERRID_29620 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D AFERRID_07300 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_16810 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D AFERRID_18500 UDP-glucose 6-dehydrogenase YwqF K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_22330 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AFERRID_11580 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D AFERRID_21030 Phenol hydroxylase P5 protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D AFERRID_14920 Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AFERRID_16770 dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D AFERRID_14930 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D AFERRID_16780 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D AFERRID_09100 Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D AFERRID_14940 Alginate biosynthesis protein AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D AFERRID_09210 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D AFERRID_14950 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D AFERRID_14960 GDP-6-deoxy-D-mannose reductase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:afj00540]
D AFERRID_22790 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D AFERRID_11870 UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D AFERRID_22770 UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D AFERRID_29800 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D AFERRID_22820 Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D AFERRID_17230 Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D AFERRID_06380 hypothetical protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D AFERRID_11720 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D AFERRID_11710 Lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D AFERRID_02360 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D AFERRID_24980 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D AFERRID_26750 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D AFERRID_11740 Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D AFERRID_12840 ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis
C 00550 Peptidoglycan biosynthesis [PATH:afj00550]
D AFERRID_09870 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D AFERRID_12030 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D AFERRID_12020 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D AFERRID_11990 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D AFERRID_11960 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D AFERRID_12040 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D AFERRID_11970 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D AFERRID_22710 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D AFERRID_18770 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D AFERRID_11980 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D AFERRID_12010 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D AFERRID_03390 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D AFERRID_12000 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_05270 Peptidoglycan glycosyltransferase MrdB K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_02740 Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D AFERRID_05260 Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D AFERRID_08470 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D AFERRID_11950 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D AFERRID_04210 D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_05280 D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_08710 D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_29550 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D AFERRID_02960 Putative penicillin-binding protein PbpX K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:afj00552]
D AFERRID_18770 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D AFERRID_22480 Alpha-monoglucosyldiacylglycerol synthase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:afj00543]
D AFERRID_19110 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D AFERRID_23250 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:afj00730]
D AFERRID_21650 Phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D AFERRID_14820 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D AFERRID_00210 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_19130 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23270 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23550 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_29510 Hydrogen cyanide synthase subunit HcnC K03153 thiO; glycine oxidase [EC:1.4.3.19]
D AFERRID_29690 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D AFERRID_18830 Thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D AFERRID_14830 Thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D AFERRID_21460 Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D AFERRID_10580 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:afj00740]
D AFERRID_11000 Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D AFERRID_11020 Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D AFERRID_29880 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D AFERRID_10990 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D AFERRID_11010 Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D AFERRID_17840 Riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D AFERRID_18860 Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:afj00750]
D AFERRID_18600 Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D AFERRID_12450 4-hydroxythreonine-4-phosphate dehydrogenase 1 K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D AFERRID_22310 Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D AFERRID_17100 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:afj00760]
D AFERRID_22200 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D AFERRID_13650 Quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D AFERRID_03240 Nicotinate-nucleotide pyrophosphorylase [carboxylating] K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D AFERRID_17030 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D AFERRID_08980 putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D AFERRID_16640 Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D AFERRID_21480 Nicotinamide-nucleotide amidohydrolase PncC K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D AFERRID_16870 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D AFERRID_23640 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:afj00770]
D AFERRID_19790 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AFERRID_19800 Acetolactate synthase isozyme 3 small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D AFERRID_19810 Ketol-acid reductoisomerase (NADP(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D AFERRID_19010 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D AFERRID_24600 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D AFERRID_25610 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D AFERRID_25600 Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D AFERRID_16880 Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D AFERRID_10500 Coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D AFERRID_07070 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D AFERRID_12220 Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D AFERRID_22320 Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D AFERRID_17750 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AFERRID_16240 Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:afj00780]
D AFERRID_11650 Malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D AFERRID_20330 3-oxoacyl-[acyl-carrier-protein] synthase 2 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D AFERRID_28790 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D AFERRID_20310 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_28770 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_22780 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D AFERRID_16510 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D AFERRID_11660 Pimeloyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D AFERRID_28900 L-Lysine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D AFERRID_11640 ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D AFERRID_24630 ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D AFERRID_11490 Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D AFERRID_16890 Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:afj00785]
D AFERRID_05300 Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D AFERRID_05310 Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D AFERRID_05060 hypothetical protein K09711 lipS1; lipoyl synthase
D AFERRID_05030 Biotin synthase K24689 lipS2; lipoyl synthase
D AFERRID_05050 Lipoate-protein ligase LplJ K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D AFERRID_06760 Octanoyltransferase LipM K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_10170 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_27820 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D AFERRID_10160 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27810 2-oxoisovalerate dehydrogenase subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D AFERRID_27800 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D AFERRID_21910 putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D AFERRID_21920 putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D AFERRID_21880 Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D AFERRID_05070 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_05090 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_08210 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_21890 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:afj00790]
D AFERRID_29680 GTP cyclohydrolase FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D AFERRID_12970 Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D AFERRID_25630 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D AFERRID_05910 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D AFERRID_02130 Dihydrofolate synthase/folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D AFERRID_11000 Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D AFERRID_18020 Aminodeoxychorismate synthase component 1 K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D AFERRID_28800 Aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D AFERRID_20780 Putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D AFERRID_13520 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D AFERRID_13530 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AFERRID_23860 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AFERRID_19860 NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D AFERRID_05190 GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D AFERRID_05210 Cyclic pyranopterin monophosphate synthase K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D AFERRID_21850 Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D AFERRID_15890 Molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D AFERRID_02240 Molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D AFERRID_07430 Purine catabolism protein PucB K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D AFERRID_02220 Molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:afj00670]
D AFERRID_28460 Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D AFERRID_11040 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D AFERRID_28650 Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D AFERRID_03700 Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D AFERRID_21880 Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D AFERRID_17630 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D AFERRID_02710 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D AFERRID_17610 S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D AFERRID_17620 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AFERRID_21910 putative glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D AFERRID_21920 putative glycine dehydrogenase (decarboxylating) subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_05070 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_05090 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_08210 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D AFERRID_21890 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:afj00860]
D AFERRID_16530 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AFERRID_14840 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D AFERRID_14890 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D AFERRID_14870 Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D AFERRID_19630 Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D AFERRID_03730 Oxygen-dependent coproporphyrinogen-III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D AFERRID_12870 Oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D AFERRID_17950 Protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D AFERRID_12310 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D AFERRID_14160 Uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D AFERRID_20920 Uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D AFERRID_14320 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D AFERRID_18750 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D AFERRID_14170 hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D AFERRID_20910 hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D AFERRID_20230 hypothetical protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D AFERRID_24700 Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:afj00130]
D AFERRID_18250 Chorismate pyruvate-lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D AFERRID_20270 3-hydroxybenzoate synthase K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
D AFERRID_18240 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D AFERRID_04410 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D AFERRID_18860 Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D AFERRID_04470 2-octaprenylphenol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D AFERRID_06780 putative protease YhbU K24844 ubiU; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]
D AFERRID_06770 hypothetical protein K24845 ubiV; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]
D AFERRID_06790 hypothetical protein K24843 ubiT; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) accessory factor UbiT
D AFERRID_27940 Ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D AFERRID_04460 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D AFERRID_11090 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D AFERRID_15510 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 coq7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D AFERRID_16950 p-benzoquinone reductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D AFERRID_27210 p-benzoquinone reductase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:afj00900]
D AFERRID_29690 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D AFERRID_22730 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D AFERRID_10370 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D AFERRID_07150 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D AFERRID_10360 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D AFERRID_29000 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D AFERRID_15330 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D AFERRID_18860 Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D AFERRID_29700 Farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D AFERRID_08490 Octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D AFERRID_22710 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:afj00909]
D AFERRID_02580 Squalene--hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129]
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:afj00906]
D AFERRID_02590 Dehydrosqualene synthase K10208 crtM; 4,4'-diapophytoene synthase [EC:2.5.1.96]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D AFERRID_00620 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D AFERRID_15380 Transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:afj00523]
D AFERRID_14920 Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AFERRID_16770 dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D AFERRID_14930 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D AFERRID_16780 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D AFERRID_16770 dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:afj00332]
D AFERRID_03550 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D AFERRID_11230 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D AFERRID_27520 Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D AFERRID_16900 Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:afj00261]
D AFERRID_14150 Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D AFERRID_14140 Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D AFERRID_17670 putative bifunctional SAT/APS kinase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D AFERRID_16440 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AFERRID_02200 Aspartate-semialdehyde dehydrogenase 2 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AFERRID_04300 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D AFERRID_06240 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:afj00521]
D AFERRID_07920 N-acetyl-D-glucosamine kinase K25026 glk; glucokinase [EC:2.7.1.2]
D AFERRID_03990 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D AFERRID_15360 Fructose-1,6-bisphosphatase/inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D AFERRID_19090 Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D AFERRID_14920 Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AFERRID_16770 dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D AFERRID_14930 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D AFERRID_16780 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D AFERRID_07920 N-acetyl-D-glucosamine kinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:afj00525]
D AFERRID_14920 Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AFERRID_16770 dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:afj00401]
D AFERRID_21220 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_09900 Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_21200 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D AFERRID_15450 Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D AFERRID_15460 Aminodeoxychorismate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D AFERRID_28750 Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D AFERRID_20310 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_28770 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_16510 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00975 Biosynthesis of various siderophores
C 00998 Biosynthesis of various antibiotics
D AFERRID_20340 Acyl carrier protein K02078 acpP; acyl carrier protein
D AFERRID_28780 Acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:afj00999]
D AFERRID_17610 S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D AFERRID_12280 Shikimate dehydrogenase (NADP(+)) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:afj00362]
D AFERRID_22090 Catechol-2,3-dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D AFERRID_06010 hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D AFERRID_27290 hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D AFERRID_21020 Putidaredoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D AFERRID_19180 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D AFERRID_23590 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
C 00627 Aminobenzoate degradation [PATH:afj00627]
D AFERRID_18860 Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D AFERRID_22080 Phenolic acid decarboxylase subunit C K22958 lpdC; gallate decarboxylase subunit C [EC:4.1.1.59]
C 00364 Fluorobenzoate degradation [PATH:afj00364]
D AFERRID_03270 hypothetical protein K01061 clcD; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:afj00625]
D AFERRID_02290 putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D AFERRID_19310 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_27350 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_23400 Nitrogenase molybdenum-iron protein beta chain K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]
D AFERRID_23420 Nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D AFERRID_23410 Nitrogenase molybdenum-iron protein alpha chain K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:afj00361]
D AFERRID_03270 hypothetical protein K01061 clcD; carboxymethylenebutenolidase [EC:3.1.1.45]
D AFERRID_22090 Catechol-2,3-dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation [PATH:afj00623]
D AFERRID_23190 Toluene-4-monooxygenase system ferredoxin subunit K15762 tmoC; toluene monooxygenase system ferredoxin subunit
D AFERRID_03270 hypothetical protein K01061 clcD; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:afj00622]
D AFERRID_22090 Catechol-2,3-dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00633 Nitrotoluene degradation [PATH:afj00633]
D AFERRID_12630 N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D AFERRID_27180 N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D AFERRID_15010 Hydrogenase-1 large chain K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D AFERRID_15040 Uptake hydrogenase small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D AFERRID_19360 Periplasmic [NiFeSe] hydrogenase large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D AFERRID_19350 Periplasmic [NiFe] hydrogenase small subunit K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
D AFERRID_22090 Catechol-2,3-dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00791 Atrazine degradation [PATH:afj00791]
D AFERRID_20110 Cyanuric acid amidohydrolase K03383 atzD; cyanuric acid amidohydrolase [EC:3.5.2.15]
D AFERRID_20140 Biuret hydrolase K19837 atzE; 1-carboxybiuret hydrolase [EC:3.5.1.131]
C 00930 Caprolactam degradation
D AFERRID_06090 Isonitrile hydratase K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:afj00626]
D AFERRID_02290 putative alcohol dehydrogenase AdhA K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D AFERRID_19310 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D AFERRID_27350 S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:afj03020]
D AFERRID_10850 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D AFERRID_10840 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D AFERRID_10530 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D AFERRID_17890 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:afj03010]
D AFERRID_r00030 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AFERRID_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AFERRID_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AFERRID_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AFERRID_r00010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D AFERRID_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D AFERRID_21250 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D AFERRID_22670 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D AFERRID_10720 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D AFERRID_10540 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D AFERRID_10620 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D AFERRID_07760 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D AFERRID_10820 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D AFERRID_10650 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D AFERRID_10210 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D AFERRID_10790 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D AFERRID_10550 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D AFERRID_10830 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D AFERRID_10560 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D AFERRID_16320 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D AFERRID_08060 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D AFERRID_10690 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D AFERRID_07750 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D AFERRID_10740 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D AFERRID_03080 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D AFERRID_04100 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D AFERRID_10880 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D AFERRID_10750 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D AFERRID_10780 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D AFERRID_10770 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D AFERRID_10660 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D AFERRID_10640 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D AFERRID_07730 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D AFERRID_10870 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D AFERRID_10890 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D AFERRID_10860 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D AFERRID_10220 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D AFERRID_10680 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D AFERRID_10600 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D AFERRID_10710 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D AFERRID_10520 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D AFERRID_10630 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D AFERRID_08030 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D AFERRID_05680 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D AFERRID_11200 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D AFERRID_10730 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D AFERRID_10760 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D AFERRID_10670 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D AFERRID_02750 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D AFERRID_11210 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D AFERRID_06310 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D AFERRID_10700 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D AFERRID_10610 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D AFERRID_18980 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D AFERRID_28720 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D AFERRID_06300 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D AFERRID_13870 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D AFERRID_05690 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
C 00970 Aminoacyl-tRNA biosynthesis [PATH:afj00970]
D AFERRID_t00070 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00180 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00300 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00400 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00130 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00320 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00340 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00470 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00420 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D AFERRID_t00390 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D AFERRID_t00360 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D AFERRID_t00140 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AFERRID_t00150 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AFERRID_t00020 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AFERRID_t00080 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AFERRID_t00090 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AFERRID_t00230 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AFERRID_t00350 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AFERRID_t00160 tRNA-His K14226 tRNA-His; tRNA His
D AFERRID_t00190 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D AFERRID_t00290 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D AFERRID_t00030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00120 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00430 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00450 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00270 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AFERRID_t00460 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AFERRID_t00060 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00200 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00280 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00260 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D AFERRID_t00050 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AFERRID_t00100 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AFERRID_t00170 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AFERRID_t00010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AFERRID_t00330 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AFERRID_t00440 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AFERRID_t00220 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AFERRID_t00310 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AFERRID_t00370 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AFERRID_t00210 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D AFERRID_t00240 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D AFERRID_t00110 tRNA-Val K14237 tRNA-Val; tRNA Val
D AFERRID_t00380 tRNA-Val K14237 tRNA-Val; tRNA Val
D AFERRID_t00410 tRNA-Val K14237 tRNA-Val; tRNA Val
D AFERRID_16530 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AFERRID_03380 Glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D AFERRID_02450 Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D AFERRID_02440 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D AFERRID_02460 Glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D AFERRID_21510 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AFERRID_13660 Aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D AFERRID_05400 Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D AFERRID_05410 Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D AFERRID_05710 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AFERRID_10270 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AFERRID_03370 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AFERRID_06320 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AFERRID_14480 Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D AFERRID_03220 Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AFERRID_16940 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AFERRID_17830 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AFERRID_17140 Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AFERRID_12400 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AFERRID_02620 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AFERRID_29010 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AFERRID_05670 Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AFERRID_05660 Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AFERRID_16260 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AFERRID_27590 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes [PATH:afj03008]
D AFERRID_22280 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D AFERRID_03950 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:afj03060]
D AFERRID_10590 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D AFERRID_10910 Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D AFERRID_05870 Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D AFERRID_02040 hypothetical protein K03072 secD; preprotein translocase subunit SecD
D AFERRID_02030 hypothetical protein K03074 secF; preprotein translocase subunit SecF
D AFERRID_02050 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D AFERRID_13900 Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D AFERRID_11850 Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D AFERRID_02610 Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D AFERRID_08070 Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D AFERRID_07050 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D AFERRID_09960 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D AFERRID_14200 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D AFERRID_09970 Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D AFERRID_09980 Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D AFERRID_22260 Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D AFERRID_17820 Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum [PATH:afj04141]
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D AFERRID_02280 Spore protein SP21 K13993 HSP20; HSP20 family protein
D AFERRID_21130 hypothetical protein K13993 HSP20; HSP20 family protein
D AFERRID_24360 Spore protein SP21 K13993 HSP20; HSP20 family protein
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:afj04122]
D AFERRID_00210 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_19130 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23270 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23550 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_05170 Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D AFERRID_19200 tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D AFERRID_21850 Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D AFERRID_05190 GTP 3',8-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D AFERRID_21840 Molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D AFERRID_18920 Molybdopterin-synthase adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D AFERRID_05210 Cyclic pyranopterin monophosphate synthase K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D AFERRID_15890 Molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D AFERRID_18820 hypothetical protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:afj03018]
D AFERRID_02970 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D AFERRID_03360 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D AFERRID_07540 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_20840 Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_16330 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D AFERRID_22570 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D AFERRID_28600 Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D AFERRID_18210 ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D AFERRID_03130 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D AFERRID_18970 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D AFERRID_06260 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D AFERRID_17690 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D AFERRID_28530 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D AFERRID_28450 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D AFERRID_28610 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D AFERRID_25650 Poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:afj03030]
D AFERRID_16380 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AFERRID_22840 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D AFERRID_28850 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D AFERRID_28830 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D AFERRID_16920 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D AFERRID_03200 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D AFERRID_14790 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D AFERRID_07720 Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D AFERRID_04070 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D AFERRID_07960 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_23820 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_25790 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_16370 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D AFERRID_22830 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D AFERRID_16200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D AFERRID_19900 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:afj03410]
D AFERRID_06420 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AFERRID_09620 Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D AFERRID_07100 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AFERRID_16980 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AFERRID_29400 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D AFERRID_08420 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D AFERRID_12320 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D AFERRID_12360 Exodeoxyribonuclease K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D AFERRID_16200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D AFERRID_17120 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AFERRID_19900 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:afj03420]
D AFERRID_10380 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D AFERRID_07970 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D AFERRID_20790 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D AFERRID_20880 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D AFERRID_16130 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D AFERRID_16200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D AFERRID_19900 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:afj03430]
D AFERRID_25520 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D AFERRID_04080 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D AFERRID_19780 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D AFERRID_28930 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D AFERRID_16130 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D AFERRID_29750 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D AFERRID_29710 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D AFERRID_25560 Exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D AFERRID_17120 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AFERRID_07960 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_23820 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_25790 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_22840 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D AFERRID_14790 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D AFERRID_28850 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D AFERRID_16920 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D AFERRID_28830 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D AFERRID_16380 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AFERRID_03200 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D AFERRID_19900 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D AFERRID_00510 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_23810 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_25780 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:afj03440]
D AFERRID_17120 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AFERRID_07960 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_23820 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_25790 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_14780 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D AFERRID_22300 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D AFERRID_28870 Recombination protein RecR K06187 recR; recombination protein RecR
D AFERRID_21490 Protein RecA K03553 recA; recombination protein RecA
D AFERRID_16200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D AFERRID_13610 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D AFERRID_13600 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AFERRID_13620 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AFERRID_17930 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AFERRID_08820 RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D AFERRID_08800 RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D AFERRID_08830 RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D AFERRID_25960 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D AFERRID_22840 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D AFERRID_14790 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D AFERRID_28850 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D AFERRID_16920 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D AFERRID_28830 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D AFERRID_16380 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AFERRID_03200 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D AFERRID_18230 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus and Alphavirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03273 Virion - Lassa virus and SFTS virus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:afj02010]
D AFERRID_23160 hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D AFERRID_03100 Sulfate transport system permease protein CysW K15496 wtpB; molybdate/tungstate transport system permease protein
D AFERRID_03090 Spermidine/putrescine import ATP-binding protein PotA K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D AFERRID_02350 putative phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D AFERRID_02480 putative phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D AFERRID_12490 putative phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D AFERRID_02650 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D AFERRID_12500 putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D AFERRID_12510 putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D AFERRID_18880 putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D AFERRID_12480 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D AFERRID_12520 putative phospholipid import ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D AFERRID_18870 putative ribonucleotide transport ATP-binding protein mkl K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D AFERRID_22600 Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D AFERRID_29080 Phosphate-binding protein PstS 1 K02040 pstS; phosphate transport system substrate-binding protein
D AFERRID_22610 Phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D AFERRID_29090 Phosphate transport system permease protein PstC 1 K02037 pstC; phosphate transport system permease protein
D AFERRID_22620 Phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D AFERRID_29100 Phosphate transport system permease protein PstA 2 K02038 pstA; phosphate transport system permease protein
D AFERRID_22630 Phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D AFERRID_09130 hypothetical protein K10107 kpsE; capsular polysaccharide transport system permease protein
D AFERRID_09150 Polysialic acid transport protein KpsM K09688 kpsM; capsular polysaccharide transport system permease protein
D AFERRID_09300 Polysialic acid transport ATP-binding protein KpsT K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D AFERRID_15550 Inner membrane transport permease YadH K09694 nodJ; lipooligosaccharide transport system permease protein
D AFERRID_15540 Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D AFERRID_17150 Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E_F; lipoprotein-releasing system permease protein
D AFERRID_17160 Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D AFERRID_03180 Lipopolysaccharide export system permease protein LptF K07091 lptF; lipopolysaccharide export system permease protein
D AFERRID_03170 Lipopolysaccharide export system permease protein LptG K11720 lptG; lipopolysaccharide export system permease protein
D AFERRID_09720 Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D AFERRID_07030 Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D AFERRID_07040 Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D AFERRID_21930 Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D AFERRID_06490 Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D AFERRID_09350 Putative multidrug export ATP-binding/permease protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D AFERRID_22160 ATP-binding/permease protein CydD K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D AFERRID_17790 Vitamin B12 transport ATP-binding protein BacA K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:afj02060]
D AFERRID_09640 Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D AFERRID_09650 HPr-like protein Crh K02784 ptsH; phosphocarrier protein HPr
D AFERRID_09660 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D AFERRID_09690 PTS system fructose-specific EIIABC component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:afj03070]
D AFERRID_04390 Outer membrane protein OprM K12340 tolC; outer membrane protein
D AFERRID_15260 Outer membrane efflux protein BepC K12340 tolC; outer membrane protein
D AFERRID_18010 Outer membrane protein TolC K12340 tolC; outer membrane protein
D AFERRID_06480 Hemolysin secretion protein D, chromosomal K11003 hlyD; membrane fusion protein, hemolysin D
D AFERRID_06490 Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D AFERRID_02040 hypothetical protein K03072 secD; preprotein translocase subunit SecD
D AFERRID_02030 hypothetical protein K03074 secF; preprotein translocase subunit SecF
D AFERRID_10910 Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D AFERRID_05870 Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D AFERRID_10590 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D AFERRID_02050 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D AFERRID_13900 Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D AFERRID_11850 Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D AFERRID_07050 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D AFERRID_02610 Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D AFERRID_08070 Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D AFERRID_09960 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D AFERRID_14200 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D AFERRID_09970 Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D AFERRID_09980 Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D AFERRID_01470 Type IV secretion system protein virB1 K03194 virB1; type IV secretion system protein VirB1
D AFERRID_24880 Type IV secretion system protein virB1 K03194 virB1; type IV secretion system protein VirB1
D AFERRID_26660 Type IV secretion system protein virB1 K03194 virB1; type IV secretion system protein VirB1
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:afj02020]
D AFERRID_22590 Phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D AFERRID_03810 Phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D AFERRID_08870 Phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D AFERRID_22580 Phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D AFERRID_22600 Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D AFERRID_29080 Phosphate-binding protein PstS 1 K02040 pstS; phosphate transport system substrate-binding protein
D AFERRID_03930 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_13100 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_15120 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_03940 Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D AFERRID_13090 Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D AFERRID_15130 Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D AFERRID_06940 hypothetical protein K09476 ompF; outer membrane pore protein F
D AFERRID_08000 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_22240 Periplasmic serine endoprotease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_24340 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_15270 Multidrug resistance protein MdtA K07799 mdtA; membrane fusion protein, multidrug efflux system
D AFERRID_01730 Sensor protein CzcS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D AFERRID_01720 Transcriptional activator protein CzcR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D AFERRID_00140 Cobalt-zinc-cadmium resistance protein CzcC K07796 cusC; outer membrane protein, copper/silver efflux system
D AFERRID_29340 Cobalt-zinc-cadmium resistance protein CzcC K07796 cusC; outer membrane protein, copper/silver efflux system
D AFERRID_00100 hypothetical protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D AFERRID_00130 Cation efflux system protein CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D AFERRID_29330 Cation efflux system protein CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D AFERRID_00120 Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D AFERRID_29320 Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D AFERRID_03450 Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D AFERRID_03460 Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D AFERRID_03440 KDP operon transcriptional regulatory protein KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D AFERRID_03490 Potassium-transporting ATPase potassium-binding subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D AFERRID_03500 Potassium-transporting ATPase ATP-binding subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D AFERRID_03520 Potassium-transporting ATPase KdpC subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit
D AFERRID_14800 Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D AFERRID_16970 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D AFERRID_29590 Delta(12)-fatty-acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D AFERRID_06640 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_08280 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_08330 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_06610 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D AFERRID_08340 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D AFERRID_06600 Type II secretion system protein D K02280 cpaC; pilus assembly protein CpaC
D AFERRID_08350 Type II secretion system protein D K02280 cpaC; pilus assembly protein CpaC
D AFERRID_06580 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D AFERRID_06570 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D AFERRID_08360 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D AFERRID_06560 hypothetical protein K12510 tadB; tight adherence protein B
D AFERRID_08250 hypothetical protein K12510 tadB; tight adherence protein B
D AFERRID_06550 hypothetical protein K12511 tadC; tight adherence protein C
D AFERRID_08240 hypothetical protein K12511 tadC; tight adherence protein C
D AFERRID_06540 Beta-barrel assembly-enhancing protease K27079 tadD; tight adherence protein D
D AFERRID_06520 hypothetical protein K27080 tadG; tight adherence protein G
D AFERRID_21420 Bifunctional uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D AFERRID_16650 Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D AFERRID_08520 Nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D AFERRID_08510 Nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D AFERRID_17010 3-hydroxylaminophenol mutase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AFERRID_14450 Sensor histidine kinase WalK K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D AFERRID_14440 Transcriptional regulatory protein ZraR K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D AFERRID_23460 Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D AFERRID_12260 Sporulation kinase A K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D AFERRID_09710 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D AFERRID_01890 Fimbrial protein K02650 pilA; type IV pilus assembly protein PilA
D AFERRID_01900 Fimbrial protein K02650 pilA; type IV pilus assembly protein PilA
D AFERRID_09070 Sensor histidine kinase GlrK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_16850 Sensor histidine kinase QseE K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_09050 Transcriptional regulatory protein GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D AFERRID_16830 Transcriptional regulatory protein GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D AFERRID_19350 Periplasmic [NiFe] hydrogenase small subunit K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
D AFERRID_19360 Periplasmic [NiFeSe] hydrogenase large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D AFERRID_19340 Hydrogenase transcriptional regulatory protein hupR1 K19641 hupR; two-component system, NtrC family, response regulator HupR/HoxA
D AFERRID_15040 Uptake hydrogenase small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D AFERRID_15010 Hydrogenase-1 large chain K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D AFERRID_00110 putative Ni/Fe-hydrogenase 1 B-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D AFERRID_14260 Sensor histidine kinase RegB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D AFERRID_14270 Photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA
D AFERRID_06830 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D AFERRID_13980 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D AFERRID_06840 Cytochrome b/c1 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D AFERRID_13990 Cytochrome b/c1 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D AFERRID_06850 Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D AFERRID_14000 hypothetical protein K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D AFERRID_20540 Cytochrome c-552 K08738 CYC; cytochrome c
D AFERRID_29570 Cytochrome c-552 K08738 CYC; cytochrome c
D AFERRID_18640 Cytochrome bd-I ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D AFERRID_21720 Cytochrome bd ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D AFERRID_18650 Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D AFERRID_21710 Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D AFERRID_04390 Outer membrane protein OprM K12340 tolC; outer membrane protein
D AFERRID_15260 Outer membrane efflux protein BepC K12340 tolC; outer membrane protein
D AFERRID_18010 Outer membrane protein TolC K12340 tolC; outer membrane protein
D AFERRID_07280 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein
D AFERRID_09110 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein
D AFERRID_29920 Acyl-homoserine-lactone synthase K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184]
D AFERRID_29900 Transcriptional activator protein AnoR K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04082 Neuroactive ligand signaling
C 04081 Hormone signaling
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecule (CAM) interaction
C 04517 IgSF CAM signaling
C 04518 Integrin signaling
C 04519 Cadherin signaling
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagocytosis
C 04142 Lysosome biogenesis
D AFERRID_08790 hypothetical protein K24915 TMEM175; TMEM175 potassium channel family protein
C 04146 Peroxisome [PATH:afj04146]
D AFERRID_11890 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D AFERRID_16600 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D AFERRID_28670 Superoxide dismutase [Fe] K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
C 04149 Peroxisome - yeast
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D AFERRID_06830 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D AFERRID_13980 Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
C 04156 Integrated stress response (ISR) signaling pathway [PATH:afj04156]
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D AFERRID_t00060 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00200 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00280 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_06260 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D AFERRID_17690 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:afj02024]
D AFERRID_28530 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D AFERRID_15450 Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D AFERRID_15460 Aminodeoxychorismate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D AFERRID_29920 Acyl-homoserine-lactone synthase K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184]
D AFERRID_04620 hypothetical protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D AFERRID_09070 Sensor histidine kinase GlrK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_16850 Sensor histidine kinase QseE K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_09050 Transcriptional regulatory protein GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D AFERRID_16830 Transcriptional regulatory protein GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D AFERRID_03440 KDP operon transcriptional regulatory protein KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D AFERRID_01060 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D AFERRID_01080 Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D AFERRID_00310 Type IV secretion system protein VirB11 K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D AFERRID_24240 Type IV secretion system protein VirB11 K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D AFERRID_26430 Type IV secretion system protein VirB11 K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D AFERRID_00280 hypothetical protein K20528 trbC; type IV secretion system protein TrbC
D AFERRID_24250 hypothetical protein K20528 trbC; type IV secretion system protein TrbC
D AFERRID_00270 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D AFERRID_24260 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D AFERRID_26470 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D AFERRID_00260 Type IV secretion system protein virB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D AFERRID_24270 Type IV secretion system protein virB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D AFERRID_26480 Type IV secretion system protein virB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D AFERRID_24290 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D AFERRID_26500 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D AFERRID_30250 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D AFERRID_24310 hypothetical protein K07344 trbL; type IV secretion system protein TrbL
D AFERRID_30230 hypothetical protein K07344 trbL; type IV secretion system protein TrbL
D AFERRID_24830 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D AFERRID_26600 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D AFERRID_30200 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D AFERRID_24840 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_24850 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_26610 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_26620 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_30190 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_24860 Type IV secretion system protein virB10 K20533 trbI; type IV secretion system protein TrbI
D AFERRID_26630 Type IV secretion system protein virB10 K20533 trbI; type IV secretion system protein TrbI
D AFERRID_30180 Type IV secretion system protein PtlG K20533 trbI; type IV secretion system protein TrbI
D AFERRID_29900 Transcriptional activator protein AnoR K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D AFERRID_11890 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D AFERRID_11020 Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D AFERRID_21060 Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D AFERRID_09370 Oligopeptide-binding protein AppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D AFERRID_09440 Oligopeptide-binding protein AppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D AFERRID_09430 Glutathione transport system permease protein GsiC K02033 ABC.PE.P; peptide/nickel transport system permease protein
D AFERRID_09420 Dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D AFERRID_09410 Oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D AFERRID_13900 Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D AFERRID_10910 Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D AFERRID_05870 Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D AFERRID_10590 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D AFERRID_02050 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D AFERRID_11850 Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D AFERRID_07050 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D AFERRID_02610 Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D AFERRID_08070 Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:afj02040]
D AFERRID_04060 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D AFERRID_09710 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D AFERRID_07540 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_20840 Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagosome formation
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04981 Folate transport and metabolism [PATH:afj04981]
D AFERRID_02710 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D AFERRID_11040 Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
C 04382 Cornified envelope formation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:afj01501]
D AFERRID_06940 hypothetical protein K09476 ompF; outer membrane pore protein F
D AFERRID_29560 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D AFERRID_07770 Beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D AFERRID_01670 Cobalt-zinc-cadmium resistance protein CzcB K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01750 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_04380 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_13070 Multidrug resistance protein MdtE K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_28480 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01660 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_01760 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_04370 Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D AFERRID_13060 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_28470 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_21060 Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D AFERRID_04390 Outer membrane protein OprM K12340 tolC; outer membrane protein
D AFERRID_15260 Outer membrane efflux protein BepC K12340 tolC; outer membrane protein
D AFERRID_18010 Outer membrane protein TolC K12340 tolC; outer membrane protein
D AFERRID_03390 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D AFERRID_02740 Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D AFERRID_05260 Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D AFERRID_08470 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D AFERRID_11950 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:afj01502]
D AFERRID_16970 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D AFERRID_12040 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D AFERRID_07710 Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D AFERRID_11970 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D AFERRID_11980 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D AFERRID_12010 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:afj01503]
D AFERRID_04320 N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D AFERRID_10250 putative L,D-transpeptidase YbiS K19236 ldtA_B_C_E; L,D-transpeptidase
D AFERRID_08000 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_22240 Periplasmic serine endoprotease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_24340 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_01670 Cobalt-zinc-cadmium resistance protein CzcB K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01750 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_04380 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_13070 Multidrug resistance protein MdtE K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_28480 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01660 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_01760 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_04370 Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D AFERRID_13060 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_28470 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_04390 Outer membrane protein OprM K12340 tolC; outer membrane protein
D AFERRID_15260 Outer membrane efflux protein BepC K12340 tolC; outer membrane protein
D AFERRID_18010 Outer membrane protein TolC K12340 tolC; outer membrane protein
D AFERRID_22790 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:afj01000]
C 01001 Protein kinases [BR:afj01001]
D AFERRID_22590 Phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D AFERRID_03930 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_13100 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_15120 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_01730 Sensor protein CzcS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D AFERRID_03450 Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D AFERRID_03460 Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D AFERRID_01620 Sensor protein QseC K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D AFERRID_08520 Nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D AFERRID_14450 Sensor histidine kinase WalK K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D AFERRID_12260 Sporulation kinase A K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D AFERRID_09070 Sensor histidine kinase GlrK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_16850 Sensor histidine kinase QseE K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_14260 Sensor histidine kinase RegB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:afj01009]
D AFERRID_17620 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D AFERRID_10390 Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:afj01002]
D AFERRID_17820 Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D AFERRID_12230 Type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D AFERRID_06630 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D AFERRID_15060 Hydrogenase 2 maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D AFERRID_19390 Hydrogenase 2 maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D AFERRID_21530 hypothetical protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D AFERRID_04900 hypothetical protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AFERRID_25680 GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AFERRID_04870 Putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D AFERRID_02110 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D AFERRID_19650 Glutamate synthase [NADPH] large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D AFERRID_16060 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D AFERRID_06090 Isonitrile hydratase K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103]
D AFERRID_10250 putative L,D-transpeptidase YbiS K19236 ldtA_B_C_E; L,D-transpeptidase
D AFERRID_28420 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D AFERRID_06350 Oligoendopeptidase F, plasmid K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D AFERRID_16970 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D AFERRID_03190 Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D AFERRID_27880 Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D AFERRID_21430 Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D AFERRID_07680 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D AFERRID_05920 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D AFERRID_02320 Protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D AFERRID_02330 Protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D AFERRID_11630 Protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D AFERRID_22740 Regulator of sigma-E protease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D AFERRID_08000 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_22240 Periplasmic serine endoprotease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_24340 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_04210 D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_05280 D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_08710 D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_02960 Putative penicillin-binding protein PbpX K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D AFERRID_29550 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D AFERRID_21310 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D AFERRID_21140 Lon protease 2 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D AFERRID_21330 Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D AFERRID_28370 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D AFERRID_00020 LexA repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AFERRID_25990 LexA repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AFERRID_22260 Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D AFERRID_17530 putative CtpA-like serine protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D AFERRID_02260 Protease 4 K04773 sppA; protease IV [EC:3.4.21.-]
D AFERRID_21830 putative protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D AFERRID_06990 ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D AFERRID_06770 hypothetical protein K24845 ubiV; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiV [EC:1.97.1.15]
D AFERRID_06780 putative protease YhbU K24844 ubiU; 2-(all-trans-polyprenyl)phenol 6-hydroxylase (prephenate) UbiU [EC:1.97.1.15]
D AFERRID_18330 Metalloprotease PmbA K03592 pmbA; PmbA protein
D AFERRID_05930 Metalloprotease TldD K03568 tldD; TldD protein
D AFERRID_28560 Modulator of FtsH protease HflC K04087 hflC; modulator of FtsH protease HflC
D AFERRID_28550 Modulator of FtsH protease HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:afj01003]
D AFERRID_22480 Alpha-monoglucosyldiacylglycerol synthase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D AFERRID_06390 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D AFERRID_03390 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D AFERRID_12000 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_05270 Peptidoglycan glycosyltransferase MrdB K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_07290 Glucans biosynthesis glucosyltransferase H K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D AFERRID_21790 Glucans biosynthesis glucosyltransferase H K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D AFERRID_07610 Cellobiose phosphorylase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
D AFERRID_23700 Mannosylfructose-phosphate synthase K00695 SUS; sucrose synthase [EC:2.4.1.13]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:afj01005]
D AFERRID_22790 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D AFERRID_22820 Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D AFERRID_11870 UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D AFERRID_22770 UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D AFERRID_29800 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D AFERRID_17230 Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D AFERRID_11710 Lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D AFERRID_06380 hypothetical protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D AFERRID_11720 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D AFERRID_02360 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D AFERRID_24980 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D AFERRID_26750 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D AFERRID_20830 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D AFERRID_17250 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D AFERRID_09750 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D AFERRID_09760 Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D AFERRID_22340 D-beta-D-heptose 7-phosphate kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D AFERRID_11740 Lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D AFERRID_12840 ADP-heptose--LPS heptosyltransferase 2 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D AFERRID_19480 Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D AFERRID_05420 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D AFERRID_29620 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D AFERRID_04620 hypothetical protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D AFERRID_25660 putative glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:afj01011]
D AFERRID_09870 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D AFERRID_12030 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D AFERRID_12020 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D AFERRID_11990 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D AFERRID_11960 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D AFERRID_12040 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D AFERRID_07710 Alanine racemase, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D AFERRID_07930 Glutamate racemase 2 K01776 murI; glutamate racemase [EC:5.1.1.3]
D AFERRID_11980 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D AFERRID_12010 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D AFERRID_18770 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D AFERRID_17850 putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D AFERRID_03390 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D AFERRID_02740 Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D AFERRID_05260 Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D AFERRID_08470 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D AFERRID_11950 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D AFERRID_04210 D-alanyl-D-alanine carboxypeptidase DacF K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_05280 D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_08710 D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D AFERRID_29550 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D AFERRID_02960 Putative penicillin-binding protein PbpX K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D AFERRID_12000 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_05270 Peptidoglycan glycosyltransferase MrdB K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_10250 putative L,D-transpeptidase YbiS K19236 ldtA_B_C_E; L,D-transpeptidase
D AFERRID_16970 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D AFERRID_21580 Soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D AFERRID_27960 Membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D AFERRID_16520 Membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D AFERRID_28810 Endolytic murein transglycosylase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D AFERRID_08680 Endolytic peptidoglycan transglycosylase RlpA K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D AFERRID_27870 Endolytic peptidoglycan transglycosylase RlpA K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D AFERRID_04320 N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D AFERRID_05500 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:afj01004]
D AFERRID_28750 Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D AFERRID_28740 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D AFERRID_20330 3-oxoacyl-[acyl-carrier-protein] synthase 2 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D AFERRID_28790 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D AFERRID_20310 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_28770 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D AFERRID_22780 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D AFERRID_16510 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D AFERRID_29590 Delta(12)-fatty-acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D AFERRID_29640 Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AFERRID_11890 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D AFERRID_28730 Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D AFERRID_12980 putative glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D AFERRID_05430 hypothetical protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D AFERRID_13640 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:afj01006]
D AFERRID_29700 Farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D AFERRID_08490 Octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D AFERRID_22710 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D AFERRID_02590 Dehydrosqualene synthase K10208 crtM; 4,4'-diapophytoene synthase [EC:2.5.1.96]
D AFERRID_28940 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AFERRID_18240 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D AFERRID_14320 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D AFERRID_18750 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:afj01007]
D AFERRID_16530 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AFERRID_03380 Glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D AFERRID_21450 Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D AFERRID_16260 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AFERRID_27590 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AFERRID_03370 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AFERRID_12400 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AFERRID_06320 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AFERRID_17830 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AFERRID_03220 Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AFERRID_16940 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AFERRID_17140 Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AFERRID_13660 Aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D AFERRID_29010 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AFERRID_05400 Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D AFERRID_05410 Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D AFERRID_10270 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AFERRID_02620 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AFERRID_05710 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AFERRID_21510 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AFERRID_05670 Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AFERRID_05660 Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AFERRID_30090 Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AFERRID_17080 Glutamate-pyruvate aminotransferase AlaC K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D AFERRID_27900 LL-diaminopimelate aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D AFERRID_09900 Histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_21200 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AFERRID_11700 Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D AFERRID_16430 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D AFERRID_28900 L-Lysine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D AFERRID_14840 Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D AFERRID_17750 Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:afj00194]
D AFERRID_16040 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D AFERRID_19910 ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D AFERRID_16030 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D AFERRID_16020 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D AFERRID_16010 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D AFERRID_16000 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D AFERRID_15990 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D AFERRID_15980 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D AFERRID_15970 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:afj03000]
D AFERRID_01410 Modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_25830 Modification methylase AplI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_12860 HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D AFERRID_19330 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D AFERRID_02920 HTH-type transcriptional activator CmpR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D AFERRID_24810 HTH-type transcriptional activator CmpR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D AFERRID_29870 HTH-type transcriptional activator CmpR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D AFERRID_00880 HTH-type transcriptional activator CmpR K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D AFERRID_20620 HTH-type transcriptional activator CmpR K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D AFERRID_29900 Transcriptional activator protein AnoR K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D AFERRID_27430 Transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D AFERRID_13300 Mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D AFERRID_10340 HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AFERRID_11240 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AFERRID_22900 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AFERRID_29500 Peroxide-responsive repressor PerR K09826 irr; Fur family transcriptional regulator, iron response regulator
D AFERRID_24550 HTH-type transcriptional regulator KipR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AFERRID_13030 CRP-like cAMP-activated global transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D AFERRID_21000 Transcriptional activator protein Anr K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D AFERRID_24460 Global nitrogen regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D AFERRID_14300 HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D AFERRID_15500 Putative HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D AFERRID_19120 HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D AFERRID_02420 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AFERRID_08100 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AFERRID_06020 hypothetical protein K10947 K10947; PadR family transcriptional regulator
D AFERRID_16890 Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AFERRID_12160 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D AFERRID_19290 Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D AFERRID_23460 Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D AFERRID_19580 Molybdenum-pterin-binding protein MopA K02019 modE; molybdate transport system regulatory protein
D AFERRID_27500 Antitoxin HigA-2 K07726 K07726; putative transcriptional regulator
D AFERRID_11130 Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D AFERRID_19050 DNA-binding transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D AFERRID_15950 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_25150 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_26950 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_06280 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D AFERRID_06290 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D AFERRID_16730 hypothetical protein K03567 gcvR; glycine cleavage system transcriptional repressor
D AFERRID_10070 Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D AFERRID_29170 hypothetical protein K07733 alpA; prophage regulatory protein
D AFERRID_06100 Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator
D AFERRID_10100 hypothetical protein K07735 algH; putative transcriptional regulator
D AFERRID_22880 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D AFERRID_11030 Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D AFERRID_11920 Transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:afj03021]
D AFERRID_10530 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D AFERRID_10850 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D AFERRID_10840 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D AFERRID_17890 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D AFERRID_04060 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D AFERRID_04110 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D AFERRID_17060 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D AFERRID_20600 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D AFERRID_22210 ECF RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D AFERRID_07020 RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D AFERRID_09710 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D AFERRID_16280 Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D AFERRID_10980 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D AFERRID_10900 Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D AFERRID_11880 Stringent starvation protein A K03599 sspA; stringent starvation protein A
D AFERRID_12180 Stringent starvation protein B K03600 sspB; stringent starvation protein B
D AFERRID_22880 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D AFERRID_18780 Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D AFERRID_18970 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D AFERRID_10260 hypothetical protein K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:afj03019]
D AFERRID_03360 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D AFERRID_09040 Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D AFERRID_22280 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D AFERRID_28600 Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D AFERRID_03950 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D AFERRID_22570 ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D AFERRID_18210 ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D AFERRID_03130 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D AFERRID_07540 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_20840 Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_16330 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D AFERRID_18970 Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D AFERRID_06260 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D AFERRID_17690 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D AFERRID_28530 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D AFERRID_28450 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D AFERRID_28610 hypothetical protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D AFERRID_25650 Poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D AFERRID_02970 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D AFERRID_09670 RNase adapter protein RapZ K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:afj03011]
D AFERRID_21250 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D AFERRID_22670 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D AFERRID_10720 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D AFERRID_10540 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D AFERRID_10620 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D AFERRID_07760 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D AFERRID_10820 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D AFERRID_10650 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D AFERRID_10210 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D AFERRID_10790 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D AFERRID_10550 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D AFERRID_10830 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D AFERRID_10560 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D AFERRID_16320 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D AFERRID_08060 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D AFERRID_10690 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D AFERRID_07750 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D AFERRID_10740 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D AFERRID_03080 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D AFERRID_04100 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D AFERRID_10880 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D AFERRID_10750 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D AFERRID_10780 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D AFERRID_10770 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D AFERRID_10660 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D AFERRID_10640 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D AFERRID_07730 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D AFERRID_10870 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D AFERRID_10890 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D AFERRID_10860 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D AFERRID_10220 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D AFERRID_10680 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D AFERRID_10600 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D AFERRID_10710 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D AFERRID_10520 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D AFERRID_10630 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D AFERRID_08030 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D AFERRID_05680 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D AFERRID_11200 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D AFERRID_10730 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D AFERRID_10760 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D AFERRID_10670 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D AFERRID_11210 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D AFERRID_06310 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D AFERRID_10700 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D AFERRID_10610 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D AFERRID_18980 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D AFERRID_28720 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D AFERRID_06300 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D AFERRID_13870 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D AFERRID_05690 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D AFERRID_02750 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D AFERRID_r00030 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AFERRID_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AFERRID_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AFERRID_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AFERRID_r00010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D AFERRID_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 03009 Ribosome biogenesis [BR:afj03009]
D AFERRID_22280 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D AFERRID_03950 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D AFERRID_22290 GTPase Era K03595 era; GTPase
D AFERRID_11220 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D AFERRID_22880 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D AFERRID_16280 Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D AFERRID_10980 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D AFERRID_10900 Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D AFERRID_02990 Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D AFERRID_12430 Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AFERRID_14470 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AFERRID_07060 Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D AFERRID_15340 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AFERRID_15930 Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AFERRID_11930 Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D AFERRID_12790 Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D AFERRID_22010 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AFERRID_06890 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D AFERRID_09000 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D AFERRID_21150 Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D AFERRID_12340 Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D AFERRID_28970 Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D AFERRID_07800 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AFERRID_04180 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AFERRID_27640 Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AFERRID_03350 Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D AFERRID_16670 Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AFERRID_04760 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase / [ribosomal protein L31]-L-lysine N-acetyltransferase [EC:2.3.1.266 2.3.1.338]
D AFERRID_05440 Ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D AFERRID_08050 Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D AFERRID_12960 Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D AFERRID_12140 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D AFERRID_12370 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D AFERRID_03360 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D AFERRID_09040 Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D AFERRID_10080 Putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D AFERRID_18210 ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D AFERRID_29040 GTPase Der K03977 engA; GTPase
D AFERRID_28540 GTPase HflX K03665 hflX; GTPase
D AFERRID_03720 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AFERRID_24610 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AFERRID_17900 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D AFERRID_16300 30S ribosome-binding factor K02834 rbfA; ribosome-binding factor A
D AFERRID_16270 Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D AFERRID_08990 Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D AFERRID_18300 Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D AFERRID_06900 RNA-binding protein K07574 yhbY; RNA-binding protein
D AFERRID_09700 Ribosome hibernation promotion factor K05808 hpf; ribosome hibernation promoting factor
D AFERRID_02770 Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
D AFERRID_28710 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:afj03016]
D AFERRID_11900 Multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D AFERRID_25640 Multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D AFERRID_16530 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AFERRID_02620 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AFERRID_17830 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AFERRID_16940 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AFERRID_06320 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AFERRID_12400 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AFERRID_17140 Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AFERRID_13660 Aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D AFERRID_21510 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AFERRID_05710 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AFERRID_10270 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AFERRID_03370 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AFERRID_03220 Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AFERRID_29010 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AFERRID_05670 Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AFERRID_05660 Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AFERRID_16260 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AFERRID_27590 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AFERRID_14850 putative HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D AFERRID_18280 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 CDK5RAP1; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D AFERRID_11340 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D AFERRID_02180 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AFERRID_16310 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D AFERRID_10350 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D AFERRID_00210 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_19130 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23270 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23550 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_03720 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AFERRID_24610 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AFERRID_28940 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AFERRID_13910 tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D AFERRID_15920 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D AFERRID_13880 Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D AFERRID_11590 Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D AFERRID_04130 Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D AFERRID_13860 Energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D AFERRID_05400 Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D AFERRID_05410 Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D AFERRID_21450 Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D AFERRID_03380 Glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D AFERRID_19750 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D AFERRID_30150 tRNA-dihydrouridine(20/20a) synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D AFERRID_08040 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D AFERRID_19100 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D AFERRID_11680 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D AFERRID_19200 tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D AFERRID_22350 tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D AFERRID_05170 Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D AFERRID_19150 Iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D AFERRID_22180 tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D AFERRID_02070 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D AFERRID_13530 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AFERRID_23860 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AFERRID_13520 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D AFERRID_19860 NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D AFERRID_05480 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D AFERRID_02060 Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D AFERRID_22860 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D AFERRID_04770 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D AFERRID_13000 tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D AFERRID_28920 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D AFERRID_04440 tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D AFERRID_28600 Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D AFERRID_16330 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D AFERRID_04250 tRNA(fMet)-specific endonuclease VapC K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:afj03012]
D AFERRID_16290 Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D AFERRID_05700 Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D AFERRID_22680 Elongation factor Ts K02357 tsf; elongation factor Ts
D AFERRID_10800 Elongation factor Tu K02358 tuf; elongation factor Tu
D AFERRID_10920 Elongation factor Tu K02358 tuf; elongation factor Tu
D AFERRID_10810 Elongation factor G K02355 fusA; elongation factor G
D AFERRID_07120 Peptide chain release factor RF1 K02835 prfA; peptide chain release factor 1
D AFERRID_22700 Ribosome-recycling factor K02838 frr; ribosome recycling factor
D AFERRID_07110 Release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D AFERRID_02760 Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D AFERRID_10570 Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D AFERRID_20860 Elongation factor P K02356 efp; elongation factor P
D AFERRID_17130 Peptide chain release factor RF2 K02836 prfB; peptide chain release factor 2
D AFERRID_04750 Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:afj03110]
D AFERRID_17490 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D AFERRID_29650 Chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D AFERRID_21320 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D AFERRID_07000 ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D AFERRID_06260 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D AFERRID_19170 Chaperone protein HscA K04044 hscA; molecular chaperone HscA
D AFERRID_17690 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D AFERRID_06250 Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D AFERRID_16120 Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D AFERRID_19160 Co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D AFERRID_22360 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D AFERRID_06270 Protein GrpE K03687 GRPE; molecular chaperone GrpE
D AFERRID_02280 Spore protein SP21 K13993 HSP20; HSP20 family protein
D AFERRID_21130 hypothetical protein K13993 HSP20; HSP20 family protein
D AFERRID_24360 Spore protein SP21 K13993 HSP20; HSP20 family protein
D AFERRID_17700 10 kDa chaperonin K04078 groES; chaperonin GroES
D AFERRID_08000 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_22240 Periplasmic serine endoprotease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_24340 Putative serine protease HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D AFERRID_05920 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D AFERRID_15970 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D AFERRID_02610 Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D AFERRID_15000 hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D AFERRID_19510 hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D AFERRID_14990 Hydrogenase isoenzymes nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D AFERRID_19520 Hydrogenase isoenzymes nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D AFERRID_03040 Tat proofreading chaperone DmsD K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D AFERRID_29790 Peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D AFERRID_21350 Peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D AFERRID_12300 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D AFERRID_17510 putative parvulin-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D AFERRID_09820 Chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D AFERRID_05510 hypothetical protein K03671 TXN; thioredoxin
D AFERRID_18960 Thioredoxin K03671 TXN; thioredoxin
D AFERRID_29740 Putative thioredoxin 2 K03671 TXN; thioredoxin
D AFERRID_04330 Thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D AFERRID_07990 Thioredoxin K05838 ybbN; putative thioredoxin
D AFERRID_04340 Glutaredoxin 3 K03676 grxC; glutaredoxin 3
D AFERRID_20530 hypothetical protein K03676 grxC; glutaredoxin 3
D AFERRID_09860 Glutaredoxin 4 K07390 grxD; monothiol glutaredoxin
D AFERRID_17730 Thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D AFERRID_03590 Thiol:disulfide interchange protein DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
D AFERRID_08970 Thiol:disulfide interchange protein DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
D AFERRID_11300 Thiol:disulfide interchange protein DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
D AFERRID_15220 Thiol:disulfide interchange protein DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
D AFERRID_28410 Thiol:disulfide interchange protein DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
D AFERRID_29130 Thiol:disulfide interchange protein DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
C 04131 Membrane trafficking [BR:afj04131]
D AFERRID_28960 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D AFERRID_15390 Glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D AFERRID_15410 Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_19840 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_27720 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:afj03051]
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:afj03032]
D AFERRID_16370 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D AFERRID_01410 Modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_25830 Modification methylase AplI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_10030 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D AFERRID_21340 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D AFERRID_24010 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_25920 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_26170 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_05650 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_24000 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_24030 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_25940 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_21260 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D AFERRID_14800 Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D AFERRID_07720 Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D AFERRID_23790 DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC
D AFERRID_25760 DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC
D AFERRID_04070 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D AFERRID_07960 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_23820 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_25790 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_22840 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D AFERRID_14790 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D AFERRID_03200 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D AFERRID_16920 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D AFERRID_28830 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D AFERRID_16380 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AFERRID_28850 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D AFERRID_22830 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D AFERRID_16200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D AFERRID_19900 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D AFERRID_00510 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_23810 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_25780 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_28690 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D AFERRID_21170 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D AFERRID_14770 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D AFERRID_01600 DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D AFERRID_01610 DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D AFERRID_00370 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D AFERRID_14530 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D AFERRID_25320 DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D AFERRID_27100 DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:afj03036]
D AFERRID_01410 Modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_25830 Modification methylase AplI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_22280 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D AFERRID_10030 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D AFERRID_21340 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D AFERRID_24010 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_25920 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_26170 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_05650 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_24000 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_24030 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_25940 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_21260 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D AFERRID_16120 Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D AFERRID_16110 Chaperone modulatory protein CbpM K18997 cbpM; chaperone modulatory protein CbpM
D AFERRID_14800 Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D AFERRID_12160 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D AFERRID_28530 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D AFERRID_19870 Chromosome partition protein Smc K03529 smc; chromosome segregation protein
D AFERRID_27600 Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D AFERRID_27610 Segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D AFERRID_12070 Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D AFERRID_20850 Cell division protein FtsB K05589 ftsB; cell division protein FtsB
D AFERRID_07040 Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D AFERRID_08470 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D AFERRID_11950 Peptidoglycan D,D-transpeptidase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D AFERRID_10310 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D AFERRID_11940 Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D AFERRID_12050 Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D AFERRID_12000 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_07030 Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D AFERRID_12080 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D AFERRID_02720 Cell division protein ZapA K09888 zapA; cell division protein ZapA
D AFERRID_12210 Cell division protein ZapD K18778 zapD; cell division protein ZapD
D AFERRID_04320 N-acetylmuramoyl-L-alanine amidase AmiC K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D AFERRID_01670 Cobalt-zinc-cadmium resistance protein CzcB K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01750 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_04380 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_13070 Multidrug resistance protein MdtE K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_28480 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_14560 Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D AFERRID_14570 Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D AFERRID_14580 Cell division topological specificity factor K03608 minE; cell division topological specificity factor
D AFERRID_05220 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D AFERRID_05240 Cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D AFERRID_05250 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D AFERRID_05270 Peptidoglycan glycosyltransferase MrdB K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_15940 Chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D AFERRID_24680 Chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D AFERRID_25160 Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D AFERRID_26960 Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D AFERRID_28440 Chromosome-partitioning ATPase Soj K03496 parA; chromosome partitioning protein
D AFERRID_15950 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_25150 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_26950 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_01600 DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D AFERRID_01610 DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D AFERRID_15920 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D AFERRID_15930 Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AFERRID_06980 Tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D AFERRID_08010 Tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D AFERRID_06220 Iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D AFERRID_16220 putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:afj03400]
D AFERRID_23710 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AFERRID_09620 Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D AFERRID_06420 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AFERRID_11830 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AFERRID_10510 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AFERRID_08420 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D AFERRID_29400 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D AFERRID_07100 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AFERRID_16980 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AFERRID_12320 Exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D AFERRID_12360 Exodeoxyribonuclease K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D AFERRID_17120 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AFERRID_19900 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D AFERRID_16200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D AFERRID_07970 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D AFERRID_20790 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D AFERRID_20880 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D AFERRID_16130 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D AFERRID_10850 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D AFERRID_10840 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D AFERRID_10530 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D AFERRID_17890 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D AFERRID_10380 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D AFERRID_25520 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D AFERRID_04080 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D AFERRID_19780 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D AFERRID_28930 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D AFERRID_29750 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D AFERRID_29710 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D AFERRID_25560 Exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D AFERRID_22840 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D AFERRID_14790 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D AFERRID_03200 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D AFERRID_16920 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D AFERRID_28830 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D AFERRID_16380 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AFERRID_28850 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D AFERRID_07960 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_23820 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_25790 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_00510 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_23810 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_25780 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_08820 RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D AFERRID_08800 RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D AFERRID_08830 RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D AFERRID_25960 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D AFERRID_21490 Protein RecA K03553 recA; recombination protein RecA
D AFERRID_13610 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D AFERRID_13600 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AFERRID_13620 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AFERRID_18230 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D AFERRID_07700 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D AFERRID_14780 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D AFERRID_17930 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AFERRID_22300 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D AFERRID_28870 Recombination protein RecR K06187 recR; recombination protein RecR
D AFERRID_16860 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D AFERRID_21170 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D AFERRID_14770 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D AFERRID_00370 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D AFERRID_14530 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D AFERRID_10030 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D AFERRID_21340 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D AFERRID_24010 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_25920 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_26170 DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta
D AFERRID_12160 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D AFERRID_05650 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_24000 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_24030 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_25940 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D AFERRID_21260 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D AFERRID_03130 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D AFERRID_00030 DNA polymerase IV 1 K03502 umuC; DNA polymerase V
D AFERRID_26000 DNA polymerase IV 1 K03502 umuC; DNA polymerase V
D AFERRID_00020 LexA repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AFERRID_25990 LexA repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AFERRID_28370 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D AFERRID_28390 DNA polymerase IV K14161 imuB; protein ImuB
D AFERRID_28400 Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D AFERRID_21500 Regulatory protein RecX K03565 recX; regulatory protein
D AFERRID_16090 DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X)
D AFERRID_03070 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D AFERRID_04780 putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D AFERRID_05940 Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AFERRID_05950 Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:afj03029]
D AFERRID_06840 Cytochrome b/c1 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D AFERRID_13990 Cytochrome b/c1 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D AFERRID_16290 Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D AFERRID_05700 Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D AFERRID_22680 Elongation factor Ts K02357 tsf; elongation factor Ts
D AFERRID_10800 Elongation factor Tu K02358 tuf; elongation factor Tu
D AFERRID_10920 Elongation factor Tu K02358 tuf; elongation factor Tu
D AFERRID_10810 Elongation factor G K02355 fusA; elongation factor G
D AFERRID_22290 GTPase Era K03595 era; GTPase
D AFERRID_16260 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AFERRID_16940 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AFERRID_13660 Aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D AFERRID_12400 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AFERRID_02450 Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D AFERRID_02440 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D AFERRID_02460 Glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D AFERRID_07960 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_23820 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_25790 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AFERRID_22750 Outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D AFERRID_06260 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D AFERRID_06270 Protein GrpE K03687 GRPE; molecular chaperone GrpE
D AFERRID_17690 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D AFERRID_17700 10 kDa chaperonin K04078 groES; chaperonin GroES
D AFERRID_06250 Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D AFERRID_00210 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_19130 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23270 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23550 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_19160 Co-chaperone protein HscB K04082 hscB; molecular chaperone HscB
D AFERRID_09860 Glutaredoxin 4 K07390 grxD; monothiol glutaredoxin
D AFERRID_06220 Iron-sulfur cluster carrier protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D AFERRID_14320 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D AFERRID_18750 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D AFERRID_13900 Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:afj02000]
D AFERRID_21930 Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D AFERRID_06490 Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D AFERRID_09350 Putative multidrug export ATP-binding/permease protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D AFERRID_18490 Putative multidrug export ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D AFERRID_30070 Multidrug resistance ABC transporter ATP-binding and permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D AFERRID_22160 ATP-binding/permease protein CydD K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D AFERRID_17790 Vitamin B12 transport ATP-binding protein BacA K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D AFERRID_08440 ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D AFERRID_23160 hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D AFERRID_03100 Sulfate transport system permease protein CysW K15496 wtpB; molybdate/tungstate transport system permease protein
D AFERRID_03090 Spermidine/putrescine import ATP-binding protein PotA K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D AFERRID_11600 putative iron export permease protein FetB K02069 STAR2; UDP-glucose/iron transport system permease protein
D AFERRID_02650 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D AFERRID_12500 putative phospholipid ABC transporter-binding protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D AFERRID_12510 putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D AFERRID_18880 putative phospholipid ABC transporter permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D AFERRID_12520 putative phospholipid import ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D AFERRID_18870 putative ribonucleotide transport ATP-binding protein mkl K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D AFERRID_02640 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D AFERRID_02350 putative phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D AFERRID_02480 putative phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D AFERRID_12490 putative phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D AFERRID_12480 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D AFERRID_22600 Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D AFERRID_29080 Phosphate-binding protein PstS 1 K02040 pstS; phosphate transport system substrate-binding protein
D AFERRID_22610 Phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D AFERRID_29090 Phosphate transport system permease protein PstC 1 K02037 pstC; phosphate transport system permease protein
D AFERRID_22620 Phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D AFERRID_29100 Phosphate transport system permease protein PstA 2 K02038 pstA; phosphate transport system permease protein
D AFERRID_22630 Phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D AFERRID_09370 Oligopeptide-binding protein AppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D AFERRID_09440 Oligopeptide-binding protein AppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D AFERRID_09430 Glutathione transport system permease protein GsiC K02033 ABC.PE.P; peptide/nickel transport system permease protein
D AFERRID_09420 Dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D AFERRID_09410 Oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D AFERRID_23120 Vitamin B12-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D AFERRID_23130 putative ABC transporter permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D AFERRID_23110 Fe(3+) dicitrate transport ATP-binding protein FecE K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D AFERRID_18340 Manganese ABC transporter substrate-binding lipoprotein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D AFERRID_18360 High-affinity zinc uptake system membrane protein ZnuB K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D AFERRID_18370 High-affinity zinc uptake system membrane protein ZnuB K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D AFERRID_18350 Iron(3+)-hydroxamate import ATP-binding protein FhuC K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D AFERRID_09150 Polysialic acid transport protein KpsM K09688 kpsM; capsular polysaccharide transport system permease protein
D AFERRID_09130 hypothetical protein K10107 kpsE; capsular polysaccharide transport system permease protein
D AFERRID_09300 Polysialic acid transport ATP-binding protein KpsT K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D AFERRID_03180 Lipopolysaccharide export system permease protein LptF K07091 lptF; lipopolysaccharide export system permease protein
D AFERRID_03170 Lipopolysaccharide export system permease protein LptG K11720 lptG; lipopolysaccharide export system permease protein
D AFERRID_09720 Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D AFERRID_15550 Inner membrane transport permease YadH K09694 nodJ; lipooligosaccharide transport system permease protein
D AFERRID_15540 Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D AFERRID_08150 Inner membrane transport permease YbhR K25180 ybhR; drug efflux transport system permease protein
D AFERRID_08140 Inner membrane transport permease YbhS K25181 ybhS; drug efflux transport system permease protein
D AFERRID_08130 putative ABC transporter ATP-binding protein YbhF K25182 ybhF; drug efflux transport system ATP-binding protein
D AFERRID_08120 Macrolide export protein MacA K25183 ybhG; membrane fusion protein YbhG
D AFERRID_17150 Lipoprotein-releasing system transmembrane protein LolC K09808 lolC_E_F; lipoprotein-releasing system permease protein
D AFERRID_17160 Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D AFERRID_07030 Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D AFERRID_07040 Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D AFERRID_08160 Inner membrane transport permease YbhR K01992 ABC-2.P; ABC-2 type transport system permease protein
D AFERRID_09830 Inner membrane transport permease YadH K01992 ABC-2.P; ABC-2 type transport system permease protein
D AFERRID_09840 Inner membrane transport permease YadH K01992 ABC-2.P; ABC-2 type transport system permease protein
D AFERRID_12470 Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AFERRID_13130 putative ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D AFERRID_18940 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D AFERRID_13140 Lipoprotein-releasing system ATP-binding protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D AFERRID_18950 Lipoprotein-releasing system ATP-binding protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D AFERRID_29660 putative 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D AFERRID_20980 Nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D AFERRID_29560 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D AFERRID_02340 Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_04200 Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_12390 putative multidrug resistance protein EmrY K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_13820 Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_21070 putative multidrug resistance protein EmrY K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_27250 Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_27420 Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_27680 Multidrug export protein EmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D AFERRID_29720 Fosmidomycin resistance protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D AFERRID_04040 Inner membrane transport protein YnfM K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D AFERRID_14910 putative metabolite transport protein CsbC K08368 yaaU; MFS transporter, putative metabolite transport protein
D AFERRID_27780 Inner membrane metabolite transport protein YgcS K08368 yaaU; MFS transporter, putative metabolite transport protein
D AFERRID_09640 Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D AFERRID_09650 HPr-like protein Crh K02784 ptsH; phosphocarrier protein HPr
D AFERRID_09660 hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D AFERRID_09690 PTS system fructose-specific EIIABC component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D AFERRID_12560 Aquaporin Z K06188 aqpZ; aquaporin
D AFERRID_08700 Voltage-gated potassium channel Kch K10716 kch; voltage-gated potassium channel
D AFERRID_16210 Voltage-gated potassium channel Kch K10716 kch; voltage-gated potassium channel
D AFERRID_08580 Ammonia channel K03320 amt; ammonium transporter, Amt family
D AFERRID_08640 Ammonia channel K03320 amt; ammonium transporter, Amt family
D AFERRID_28880 Ammonia channel K03320 amt; ammonium transporter, Amt family
D AFERRID_05540 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_11080 Stringent starvation protein A K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_22970 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_25060 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_26830 Glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D AFERRID_11880 Stringent starvation protein A K03599 sspA; stringent starvation protein A
D AFERRID_25550 Modulator of FtsH protease YccA K19416 yccA; modulator of FtsH protease
D AFERRID_15310 Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D AFERRID_27530 putative MscS family protein.1 K05802 mscK; potassium-dependent mechanosensitive channel
D AFERRID_03800 Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D AFERRID_09520 hypothetical protein K03561 exbB; biopolymer transport protein ExbB
D AFERRID_17190 Biopolymer transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D AFERRID_19990 hypothetical protein K03561 exbB; biopolymer transport protein ExbB
D AFERRID_23080 hypothetical protein K03561 exbB; biopolymer transport protein ExbB
D AFERRID_03790 hypothetical protein K03559 exbD; biopolymer transport protein ExbD
D AFERRID_09530 Biopolymer transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D AFERRID_17200 Biopolymer transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D AFERRID_20000 hypothetical protein K03559 exbD; biopolymer transport protein ExbD
D AFERRID_23090 hypothetical protein K03559 exbD; biopolymer transport protein ExbD
D AFERRID_13580 Biopolymer transport protein ExbB K03562 tolQ; biopolymer transport protein TolQ
D AFERRID_13570 Biopolymer transport protein ExbD K03560 tolR; biopolymer transport protein TolR
D AFERRID_15850 Cobalt/magnesium transport protein CorA K03284 corA; magnesium transporter
D AFERRID_15870 Cobalt/magnesium transport protein CorA K03284 corA; magnesium transporter
D AFERRID_15880 Cobalt/magnesium transport protein CorA K03284 corA; magnesium transporter
D AFERRID_08750 Putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D AFERRID_13290 hypothetical protein K08363 merT; mercuric ion transport protein
D AFERRID_13280 Mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein
D AFERRID_08790 hypothetical protein K24915 TMEM175; TMEM175 potassium channel family protein
D AFERRID_02080 Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family
D AFERRID_06940 hypothetical protein K09476 ompF; outer membrane pore protein F
D AFERRID_10930 Peptidoglycan-binding protein ArfA K03286 TC.OOP; OmpA-OmpF porin, OOP family
D AFERRID_17600 hypothetical protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D AFERRID_05020 47 kDa outer membrane protein K06076 fadL; long-chain fatty acid transport protein
D AFERRID_10290 hypothetical protein K06076 fadL; long-chain fatty acid transport protein
D AFERRID_01700 hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D AFERRID_08880 hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D AFERRID_08890 Vitamin B12 transporter BtuB K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D AFERRID_19960 hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D AFERRID_23060 hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D AFERRID_23070 hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D AFERRID_00140 Cobalt-zinc-cadmium resistance protein CzcC K07796 cusC; outer membrane protein, copper/silver efflux system
D AFERRID_29340 Cobalt-zinc-cadmium resistance protein CzcC K07796 cusC; outer membrane protein, copper/silver efflux system
D AFERRID_04390 Outer membrane protein OprM K12340 tolC; outer membrane protein
D AFERRID_15260 Outer membrane efflux protein BepC K12340 tolC; outer membrane protein
D AFERRID_18010 Outer membrane protein TolC K12340 tolC; outer membrane protein
D AFERRID_21060 Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D AFERRID_07280 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein
D AFERRID_09110 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein
D AFERRID_03620 hypothetical protein K07267 oprB; porin
D AFERRID_04820 hypothetical protein K07267 oprB; porin
D AFERRID_22750 Outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D AFERRID_29030 Outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D AFERRID_16660 Outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D AFERRID_11250 Outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D AFERRID_29530 Translocation and assembly module TamA K07278 tamA; translocation and assembly module TamA
D AFERRID_29520 Translocation and assembly module TamB K09800 tamB; translocation and assembly module TamB
D AFERRID_00430 Autotransporter adhesin BtaE K21449 ata; trimeric autotransporter adhesin
D AFERRID_09730 Lipopolysaccharide export system protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D AFERRID_09740 Lipopolysaccharide export system protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D AFERRID_09810 LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D AFERRID_16930 LPS-assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D AFERRID_18310 Magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D AFERRID_24730 Major carboxysome shell protein 1A K04027 eutM; ethanolamine utilization protein EutM
D AFERRID_01080 Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D AFERRID_00230 Cadmium, cobalt and zinc/H(+)-K(+) antiporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D AFERRID_22540 Cadmium, cobalt and zinc/H(+)-K(+) antiporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D AFERRID_22550 Cadmium, cobalt and zinc/H(+)-K(+) antiporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D AFERRID_00120 Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D AFERRID_29320 Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D AFERRID_01660 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_01760 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_04370 Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D AFERRID_13060 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_28470 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_28160 Multidrug transporter K03297 emrE; small multidrug resistance pump
D AFERRID_18180 Inner membrane protein YrbG K07301 yrbG; cation:H+ antiporter
D AFERRID_03230 Na(+)/H(+) antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D AFERRID_03580 Na(+)/H(+) antiporter NhaG K03316 nhaP; Na+:H+ antiporter
D AFERRID_29630 Glutathione-regulated potassium-efflux system protein KefC K03455 KEA1_2_3; K+:H+ antiporter
D AFERRID_20300 Na(+)/H(+)-K(+) antiporter GerN K26731 CHX; K+:H+ antiporter
D AFERRID_00890 H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D AFERRID_00950 H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D AFERRID_14190 H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D AFERRID_20470 H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D AFERRID_20480 H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D AFERRID_08090 Arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D AFERRID_17850 putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D AFERRID_12570 hypothetical protein K22736 VIT; vacuolar iron transporter family protein
D AFERRID_12000 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D AFERRID_03780 hypothetical protein K03832 tonB; periplasmic protein TonB
D AFERRID_06460 hypothetical protein K03832 tonB; periplasmic protein TonB
D AFERRID_09510 Filamentous hemagglutinin K03832 tonB; periplasmic protein TonB
D AFERRID_20010 Filamentous hemagglutinin K03832 tonB; periplasmic protein TonB
D AFERRID_23100 hypothetical protein K03832 tonB; periplasmic protein TonB
D AFERRID_29730 hypothetical protein K03832 tonB; periplasmic protein TonB
D AFERRID_13500 Peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D AFERRID_13560 hypothetical protein K03646 tolA; colicin import membrane protein
D AFERRID_13540 Dipeptidyl-peptidase 5 K03641 tolB; TolB protein
D AFERRID_11510 Multidrug export protein EmrA K03543 emrA; membrane fusion protein, multidrug efflux system
D AFERRID_13840 putative multidrug resistance protein EmrK K03543 emrA; membrane fusion protein, multidrug efflux system
D AFERRID_21050 Multidrug export protein EmrA K03543 emrA; membrane fusion protein, multidrug efflux system
D AFERRID_00130 Cation efflux system protein CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D AFERRID_29330 Cation efflux system protein CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D AFERRID_06480 Hemolysin secretion protein D, chromosomal K11003 hlyD; membrane fusion protein, hemolysin D
D AFERRID_01670 Cobalt-zinc-cadmium resistance protein CzcB K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01750 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_04380 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_13070 Multidrug resistance protein MdtE K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_28480 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_15270 Multidrug resistance protein MdtA K07799 mdtA; membrane fusion protein, multidrug efflux system
D AFERRID_04830 hypothetical protein K04758 feoA; ferrous iron transport protein A
D AFERRID_04840 Fe(2+) transporter FeoB K04759 feoB; ferrous iron transport protein B
D AFERRID_01110 Inner membrane protein YebS K03808 pqiA; intermembrane transport protein PqiA/LetA
D AFERRID_01120 Paraquat-inducible protein B K06192 pqiB; intermembrane transport protein PqiB/LetB
D AFERRID_01130 hypothetical protein K09857 pqiC; intermembrane transport lipoprotein PqiC
C 02044 Secretion system [BR:afj02044]
D AFERRID_06490 Toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D AFERRID_06480 Hemolysin secretion protein D, chromosomal K11003 hlyD; membrane fusion protein, hemolysin D
D AFERRID_04390 Outer membrane protein OprM K12340 tolC; outer membrane protein
D AFERRID_15260 Outer membrane efflux protein BepC K12340 tolC; outer membrane protein
D AFERRID_18010 Outer membrane protein TolC K12340 tolC; outer membrane protein
D AFERRID_12230 Type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D AFERRID_01890 Fimbrial protein K02650 pilA; type IV pilus assembly protein PilA
D AFERRID_01900 Fimbrial protein K02650 pilA; type IV pilus assembly protein PilA
D AFERRID_12270 putative type II secretion system protein HxcR K02652 pilB; type IV pilus assembly protein PilB
D AFERRID_01860 Type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D AFERRID_28980 Lipopolysaccharide assembly protein B K02656 pilF; type IV pilus assembly protein PilF
D AFERRID_19740 hypothetical protein K02662 pilM; type IV pilus assembly protein PilM
D AFERRID_19730 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D AFERRID_19720 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO
D AFERRID_19710 hypothetical protein K02665 pilP; type IV pilus assembly protein PilP
D AFERRID_19700 Type IV pilus biogenesis and competence protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D AFERRID_11440 Twitching mobility protein K02669 pilT; twitching motility protein PilT
D AFERRID_11410 Twitching mobility protein K02670 pilU; twitching motility protein PilU
D AFERRID_01850 hypothetical protein K02671 pilV; type IV pilus assembly protein PilV
D AFERRID_01820 Type IV pilus biogenesis factor PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D AFERRID_28840 hypothetical protein K02676 pilZ; type IV pilus assembly protein PilZ
D AFERRID_02190 hypothetical protein K08086 fimV; pilus assembly protein FimV
D AFERRID_06630 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D AFERRID_06610 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D AFERRID_08340 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D AFERRID_06600 Type II secretion system protein D K02280 cpaC; pilus assembly protein CpaC
D AFERRID_08350 Type II secretion system protein D K02280 cpaC; pilus assembly protein CpaC
D AFERRID_06580 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D AFERRID_06570 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D AFERRID_08360 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D AFERRID_06560 hypothetical protein K12510 tadB; tight adherence protein B
D AFERRID_08250 hypothetical protein K12510 tadB; tight adherence protein B
D AFERRID_06550 hypothetical protein K12511 tadC; tight adherence protein C
D AFERRID_08240 hypothetical protein K12511 tadC; tight adherence protein C
D AFERRID_06540 Beta-barrel assembly-enhancing protease K27079 tadD; tight adherence protein D
D AFERRID_06620 hypothetical protein K12513 tadE; tight adherence protein E
D AFERRID_06520 hypothetical protein K27080 tadG; tight adherence protein G
D AFERRID_06640 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_08280 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_08330 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_14720 Fimbrial protein K10924 mshA; MSHA pilin protein MshA
D AFERRID_14710 hypothetical protein K10926 mshC; MSHA pilin protein MshC
D AFERRID_14700 hypothetical protein K10927 mshD; MSHA pilin protein MshD
D AFERRID_14740 Type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE
D AFERRID_14730 Type II secretion system protein F K12278 mshG; MSHA biogenesis protein MshG
D AFERRID_14660 hypothetical protein K12279 mshI; MSHA biogenesis protein MshI
D AFERRID_14670 hypothetical protein K12279 mshI; MSHA biogenesis protein MshI
D AFERRID_14650 hypothetical protein K12280 mshJ; MSHA biogenesis protein MshJ
D AFERRID_14610 Type II secretion system protein D K12282 mshL; MSHA biogenesis protein MshL
D AFERRID_14600 hypothetical protein K12283 mshM; MSHA biogenesis protein MshM
D AFERRID_14590 Beta-barrel assembly-enhancing protease K12284 mshN; MSHA biogenesis protein MshN
D AFERRID_14690 hypothetical protein K12285 mshO; MSHA biogenesis protein MshO
D AFERRID_14680 hypothetical protein K12286 mshP; MSHA biogenesis protein MshP
D AFERRID_11470 hypothetical protein K02221 yggT; YggT family protein
D AFERRID_16140 ComE operon protein 1 K02237 comEA; competence protein ComEA
D AFERRID_17180 ComE operon protein 3 K02238 comEC; competence protein ComEC
D AFERRID_01470 Type IV secretion system protein virB1 K03194 virB1; type IV secretion system protein VirB1
D AFERRID_24880 Type IV secretion system protein virB1 K03194 virB1; type IV secretion system protein VirB1
D AFERRID_26660 Type IV secretion system protein virB1 K03194 virB1; type IV secretion system protein VirB1
D AFERRID_00310 Type IV secretion system protein VirB11 K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D AFERRID_24240 Type IV secretion system protein VirB11 K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D AFERRID_26430 Type IV secretion system protein VirB11 K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D AFERRID_00280 hypothetical protein K20528 trbC; type IV secretion system protein TrbC
D AFERRID_24250 hypothetical protein K20528 trbC; type IV secretion system protein TrbC
D AFERRID_00270 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D AFERRID_24260 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D AFERRID_26470 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D AFERRID_00260 Type IV secretion system protein virB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D AFERRID_24270 Type IV secretion system protein virB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D AFERRID_26480 Type IV secretion system protein virB4 K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D AFERRID_24830 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D AFERRID_26600 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D AFERRID_30200 hypothetical protein K20531 trbF; type IV secretion system protein TrbF
D AFERRID_24840 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_24850 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_26610 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_26620 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_30190 hypothetical protein K20532 trbG; type IV secretion system protein TrbG
D AFERRID_24860 Type IV secretion system protein virB10 K20533 trbI; type IV secretion system protein TrbI
D AFERRID_26630 Type IV secretion system protein virB10 K20533 trbI; type IV secretion system protein TrbI
D AFERRID_30180 Type IV secretion system protein PtlG K20533 trbI; type IV secretion system protein TrbI
D AFERRID_24290 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D AFERRID_26500 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D AFERRID_30250 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D AFERRID_24310 hypothetical protein K07344 trbL; type IV secretion system protein TrbL
D AFERRID_30230 hypothetical protein K07344 trbL; type IV secretion system protein TrbL
D AFERRID_11850 Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D AFERRID_02610 Protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D AFERRID_02040 hypothetical protein K03072 secD; preprotein translocase subunit SecD
D AFERRID_10910 Protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D AFERRID_02030 hypothetical protein K03074 secF; preprotein translocase subunit SecF
D AFERRID_05870 Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D AFERRID_10590 Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D AFERRID_08070 Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D AFERRID_07050 Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D AFERRID_02050 hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D AFERRID_13900 Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D AFERRID_09960 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D AFERRID_14200 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D AFERRID_09970 Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D AFERRID_09980 Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:afj02042]
D AFERRID_02080 Magnesium and cobalt efflux protein CorC K03699 tlyC; magnesium and cobalt exporter, CNNM family
D AFERRID_04310 hypothetical protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:afj02022]
D AFERRID_22590 Phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D AFERRID_03810 Phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D AFERRID_08870 Phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D AFERRID_22580 Phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D AFERRID_03930 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_13100 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_15120 Osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D AFERRID_03940 Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D AFERRID_13090 Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D AFERRID_15130 Transcriptional regulatory protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D AFERRID_01730 Sensor protein CzcS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D AFERRID_01720 Transcriptional activator protein CzcR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D AFERRID_03450 Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D AFERRID_03460 Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D AFERRID_03440 KDP operon transcriptional regulatory protein KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D AFERRID_01620 Sensor protein QseC K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D AFERRID_01630 Transcriptional regulatory protein QseB K02483 K02483; two-component system, OmpR family, response regulator
D AFERRID_08520 Nitrogen regulation protein NR(II) K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D AFERRID_08510 Nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D AFERRID_14450 Sensor histidine kinase WalK K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D AFERRID_14440 Transcriptional regulatory protein ZraR K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D AFERRID_12260 Sporulation kinase A K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D AFERRID_09070 Sensor histidine kinase GlrK K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_16850 Sensor histidine kinase QseE K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D AFERRID_09050 Transcriptional regulatory protein GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D AFERRID_16830 Transcriptional regulatory protein GlrR K07715 glrR; two-component system, NtrC family, response regulator GlrR
D AFERRID_19340 Hydrogenase transcriptional regulatory protein hupR1 K19641 hupR; two-component system, NtrC family, response regulator HupR/HoxA
D AFERRID_14260 Sensor histidine kinase RegB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D AFERRID_14270 Photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA
D AFERRID_20990 Bicarbonate transport ATP-binding protein CmpC K22067 nasS; two-component system, oxyanion-binding sensor
D AFERRID_20900 putative transcriptional regulatory protein pdtaR K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
C 02035 Bacterial motility proteins [BR:afj02035]
D AFERRID_12260 Sporulation kinase A K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D AFERRID_11440 Twitching mobility protein K02669 pilT; twitching motility protein PilT
D AFERRID_11410 Twitching mobility protein K02670 pilU; twitching motility protein PilU
D AFERRID_01890 Fimbrial protein K02650 pilA; type IV pilus assembly protein PilA
D AFERRID_01900 Fimbrial protein K02650 pilA; type IV pilus assembly protein PilA
D AFERRID_12270 putative type II secretion system protein HxcR K02652 pilB; type IV pilus assembly protein PilB
D AFERRID_01860 Type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D AFERRID_12230 Type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D AFERRID_28980 Lipopolysaccharide assembly protein B K02656 pilF; type IV pilus assembly protein PilF
D AFERRID_19700 Type IV pilus biogenesis and competence protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D AFERRID_19710 hypothetical protein K02665 pilP; type IV pilus assembly protein PilP
D AFERRID_19720 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO
D AFERRID_19730 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D AFERRID_19740 hypothetical protein K02662 pilM; type IV pilus assembly protein PilM
D AFERRID_28840 hypothetical protein K02676 pilZ; type IV pilus assembly protein PilZ
D AFERRID_01850 hypothetical protein K02671 pilV; type IV pilus assembly protein PilV
D AFERRID_01820 Type IV pilus biogenesis factor PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D AFERRID_06640 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_08280 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_08330 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D AFERRID_06630 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D AFERRID_06610 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D AFERRID_08340 hypothetical protein K02279 cpaB; pilus assembly protein CpaB
D AFERRID_06600 Type II secretion system protein D K02280 cpaC; pilus assembly protein CpaC
D AFERRID_08350 Type II secretion system protein D K02280 cpaC; pilus assembly protein CpaC
D AFERRID_06580 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D AFERRID_06570 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D AFERRID_08360 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:afj04812]
D AFERRID_17980 hypothetical protein K06990 MEMO1; MEMO1 family protein
D AFERRID_05220 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D AFERRID_12080 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D AFERRID_12070 Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D AFERRID_14560 Septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D AFERRID_14570 Septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D AFERRID_14580 Cell division topological specificity factor K03608 minE; cell division topological specificity factor
D AFERRID_15940 Chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D AFERRID_24680 Chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D AFERRID_25160 Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D AFERRID_26960 Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D AFERRID_28440 Chromosome-partitioning ATPase Soj K03496 parA; chromosome partitioning protein
D AFERRID_15950 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_25150 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AFERRID_26950 putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:afj04147]
D AFERRID_16080 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D AFERRID_07540 Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_20840 Enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AFERRID_15390 Glyceraldehyde-3-phosphate dehydrogenase 1 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D AFERRID_15400 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D AFERRID_15410 Pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_19840 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_27720 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D AFERRID_21950 putative peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D AFERRID_17690 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D AFERRID_06260 Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D AFERRID_08720 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D AFERRID_25670 Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D AFERRID_10800 Elongation factor Tu K02358 tuf; elongation factor Tu
D AFERRID_10920 Elongation factor Tu K02358 tuf; elongation factor Tu
D AFERRID_14850 putative HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D AFERRID_11890 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D AFERRID_17620 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AFERRID_10580 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D AFERRID_15100 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D AFERRID_16410 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D AFERRID_12190 Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D AFERRID_07880 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D AFERRID_17010 3-hydroxylaminophenol mutase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AFERRID_14890 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D AFERRID_20780 Putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D AFERRID_21180 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D AFERRID_03700 Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D AFERRID_10150 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_21760 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_28620 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D AFERRID_23030 Caffeyl-CoA reductase-Etf complex subunit CarE K03522 fixB; electron transfer flavoprotein alpha subunit
D AFERRID_00640 Glucose-6-phosphate 1-dehydrogenase 1 K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_01200 Glucose-6-phosphate 1-dehydrogenase 1 K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_30130 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D AFERRID_05880 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:afj02048]
D AFERRID_12710 Putative DNA repair helicase RadD K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D AFERRID_15660 Type-1 restriction enzyme R protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D AFERRID_22390 hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D AFERRID_23930 Putative DNA repair helicase RadD K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D AFERRID_28240 hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D AFERRID_12700 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D AFERRID_15680 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D AFERRID_22420 Type-1 restriction enzyme EcoKI specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D AFERRID_23940 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D AFERRID_28070 Type-1 restriction enzyme EcoKI specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D AFERRID_11150 putative type I restriction enzymeP M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D AFERRID_12680 putative type I restriction enzymeP M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D AFERRID_15740 Type I restriction enzyme EcoKI M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D AFERRID_22410 putative type I restriction enzymeP M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D AFERRID_23950 putative type I restriction enzymeP M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D AFERRID_00510 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_23810 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_25780 Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D AFERRID_01410 Modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_25830 Modification methylase AplI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AFERRID_23920 hypothetical protein K07448 mrr; restriction system protein
D AFERRID_09240 Endoribonuclease PemK K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-]
D AFERRID_09230 Antitoxin PemI K18842 chpS; antitoxin ChpS
D AFERRID_07200 Toxin YhaV K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D AFERRID_07210 Antitoxin PrlF K19156 prlF; antitoxin PrlF
D AFERRID_07180 Antitoxin DinJ K07473 dinJ; DNA-damage-inducible protein J
D AFERRID_12640 Antitoxin DinJ K07473 dinJ; DNA-damage-inducible protein J
D AFERRID_24050 Antitoxin DinJ K07473 dinJ; DNA-damage-inducible protein J
D AFERRID_01560 Toxin YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D AFERRID_13450 Toxin YoeB K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D AFERRID_01570 Antitoxin YefM K19159 yefM; antitoxin YefM
D AFERRID_13460 Antitoxin YefM K19159 yefM; antitoxin YefM
D AFERRID_25280 Antitoxin HicB K18843 hicB; antitoxin HicB
D AFERRID_02020 Endoribonuclease HigB K07334 higB-1; toxin HigB-1
D AFERRID_15630 Toxin HigB-1 K07334 higB-1; toxin HigB-1
D AFERRID_20650 Endoribonuclease HigB K07334 higB-1; toxin HigB-1
D AFERRID_02010 putative HTH-type transcriptional regulator YbaQ K21498 higA-1; antitoxin HigA-1
D AFERRID_15620 Antitoxin HigA K21498 higA-1; antitoxin HigA-1
D AFERRID_20640 putative HTH-type transcriptional regulator YbaQ K21498 higA-1; antitoxin HigA-1
D AFERRID_04250 tRNA(fMet)-specific endonuclease VapC K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D AFERRID_04240 hypothetical protein K18829 mvpT; antitoxin VapB
D AFERRID_16480 hypothetical protein K28279 vapC22; ribonuclease VapC22 [EC:3.1.-.-]
D AFERRID_28190 hypothetical protein K28279 vapC22; ribonuclease VapC22 [EC:3.1.-.-]
D AFERRID_16490 hypothetical protein K28280 vapB22; antitoxin VapB22
D AFERRID_28060 Ribonuclease VapC41 K28143 vapC24S; ribonuclease VapC24/25/29/31/33/37/38/39/41/43/44/48 [EC:3.1.-.-]
D AFERRID_28050 Antitoxin VapB41 K28144 vapB24S; antitoxin VapB24/25/29/31/33/37/38/39/41/43/44/48
D AFERRID_03850 Ribonuclease VapC49 K28275 vapC35S; ribonuclease VapC35/45/46/47 [EC:3.1.-.-]
D AFERRID_03840 hypothetical protein K28276 vapB35S; antitoxin VapB35/45/46/47
D AFERRID_13480 Toxin FitB K07062 fitB; toxin FitB [EC:3.1.-.-]
D AFERRID_13470 Antitoxin FitA K21495 fitA; antitoxin FitA
D AFERRID_12080 Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D AFERRID_05220 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D AFERRID_01600 DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D AFERRID_01610 DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D AFERRID_16530 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AFERRID_00210 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_19130 Cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23270 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AFERRID_23550 Cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:afj01504]
D AFERRID_01730 Sensor protein CzcS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D AFERRID_01720 Transcriptional activator protein CzcR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D AFERRID_16970 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D AFERRID_01670 Cobalt-zinc-cadmium resistance protein CzcB K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01750 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_04380 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_13070 Multidrug resistance protein MdtE K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_28480 Multidrug resistance protein MdtA K03585 acrA; membrane fusion protein, multidrug efflux system
D AFERRID_01660 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_01760 Cobalt-zinc-cadmium resistance protein CzcA K18138 acrB; multidrug efflux pump
D AFERRID_04370 Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D AFERRID_13060 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_28470 Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D AFERRID_21060 Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D AFERRID_10340 HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AFERRID_04390 Outer membrane protein OprM K12340 tolC; outer membrane protein
D AFERRID_15260 Outer membrane efflux protein BepC K12340 tolC; outer membrane protein
D AFERRID_18010 Outer membrane protein TolC K12340 tolC; outer membrane protein
D AFERRID_06940 hypothetical protein K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:afj03100]
D AFERRID_t00070 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00180 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00300 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00400 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AFERRID_t00130 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00320 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00340 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00470 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AFERRID_t00420 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D AFERRID_t00390 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D AFERRID_t00360 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D AFERRID_t00140 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AFERRID_t00150 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AFERRID_t00020 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AFERRID_t00080 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AFERRID_t00090 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AFERRID_t00230 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AFERRID_t00350 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AFERRID_t00160 tRNA-His K14226 tRNA-His; tRNA His
D AFERRID_t00190 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D AFERRID_t00290 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D AFERRID_t00030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00120 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00430 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00450 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AFERRID_t00270 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AFERRID_t00460 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AFERRID_t00060 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00200 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00280 tRNA-Met K14230 tRNA-Met; tRNA Met
D AFERRID_t00260 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D AFERRID_t00050 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AFERRID_t00100 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AFERRID_t00170 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AFERRID_t00010 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AFERRID_t00330 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AFERRID_t00440 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AFERRID_t00220 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AFERRID_t00310 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AFERRID_t00370 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AFERRID_t00210 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D AFERRID_t00240 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D AFERRID_t00110 tRNA-Val K14237 tRNA-Val; tRNA Val
D AFERRID_t00380 tRNA-Val K14237 tRNA-Val; tRNA Val
D AFERRID_t00410 tRNA-Val K14237 tRNA-Val; tRNA Val
D AFERRID_r00030 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AFERRID_r00040 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AFERRID_r00020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AFERRID_r00050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AFERRID_r00010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D AFERRID_r00060 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D AFERRID_tm00010 transfer-messenger RNA, SsrA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D AFERRID_02560 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219]
D AFERRID_21680 Coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D AFERRID_20080 Nicotinate dehydrogenase small FeS subunit K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D AFERRID_23020 Electron transfer flavoprotein-ubiquinone oxidoreductase K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-]
D AFERRID_08960 Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D AFERRID_08950 Peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D AFERRID_05130 Ferredoxin--NADP reductase K28385 hdrA; sulfur-oxidizing heterodisulfide reductase-like enzyme system (type I) subunit A [EC:1.8.4.17]
D AFERRID_05100 8-methylmenaquinol:fumarate reductase membrane anchor subunit K28386 hdrB; sulfur-oxidizing heterodisulfide reductase-like enzyme system (type I) subunit B [EC:1.8.4.17]
D AFERRID_05140 Lactate utilization protein A K28386 hdrB; sulfur-oxidizing heterodisulfide reductase-like enzyme system (type I) subunit B [EC:1.8.4.17]
D AFERRID_05460 Lactate utilization protein A K28386 hdrB; sulfur-oxidizing heterodisulfide reductase-like enzyme system (type I) subunit B [EC:1.8.4.17]
D AFERRID_05110 hypothetical protein K28387 hdrC; sulfur-oxidizing heterodisulfide reductase-like enzyme system (type I) subunit C [EC:1.8.4.17]
D AFERRID_05150 hypothetical protein K28387 hdrC; sulfur-oxidizing heterodisulfide reductase-like enzyme system (type I) subunit C [EC:1.8.4.17]
D AFERRID_15600 Disulfide-bond oxidoreductase YghU K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D AFERRID_25370 Disulfide-bond oxidoreductase YghU K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D AFERRID_17460 Cytochrome c551 peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D AFERRID_22910 Putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D AFERRID_15820 Putative quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D AFERRID_27200 Quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D AFERRID_13270 Mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1]
D AFERRID_14420 hypothetical protein K20150 cyc2; iron:rusticyanin reductase [EC:1.16.9.1]
D AFERRID_08110 Glutaredoxin arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D AFERRID_06750 7-carboxy-7-deazaguanine synthase K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D AFERRID_18000 Pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D AFERRID_02790 Hydrogenase-4 component B K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D AFERRID_02840 hypothetical protein K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D AFERRID_02850 NADH-quinone oxidoreductase subunit M K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D AFERRID_02660 Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D AFERRID_17040 Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D AFERRID_17050 Protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D AFERRID_00610 putative fatty acid methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D AFERRID_08780 putative fatty acid methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D AFERRID_18320 Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D AFERRID_19620 1-acyl-sn-glycerol-3-phosphate acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270]
D AFERRID_11620 Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D AFERRID_11610 Putative arginyl-tRNA--protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D AFERRID_19610 hypothetical protein K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30]
D AFERRID_23440 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase K05951 draT; NAD+---dinitrogen-reductase ADP-D-ribosyltransferase [EC:2.4.2.37]
D AFERRID_23620 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D AFERRID_03060 Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D AFERRID_22810 dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose transaminase K20084 gnnB; UDP-N-acetyl-3-dehydro-alpha-D-glucosamine 3-aminotranferase [EC:2.6.1.122]
D AFERRID_17760 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D AFERRID_17480 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D AFERRID_09680 HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D AFERRID_13590 Acyl-CoA thioester hydrolase YbgC K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D AFERRID_21970 5'-3' exoribonuclease K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D AFERRID_03910 hypothetical protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D AFERRID_29070 hypothetical protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D AFERRID_04450 putative metal-dependent hydrolase YjjV K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D AFERRID_22020 putative metal-dependent hydrolase YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D AFERRID_23450 ADP-ribosyl-[dinitrogen reductase] glycohydrolase K05521 draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]
D AFERRID_23850 N-glycosylase/DNA lyase K03653 K03653; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D AFERRID_14490 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D AFERRID_16740 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D AFERRID_17780 2-oxoglutaramate amidase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D AFERRID_28510 Maf-like protein YceF K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D AFERRID_18850 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D AFERRID_00180 Copper-exporting P-type ATPase B K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D AFERRID_20670 Copper-exporting P-type ATPase B K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D AFERRID_08940 Calcium-transporting ATPase 1 K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D AFERRID_04010 Magnesium-transporting ATPase, P-type 1 K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D AFERRID_21440 Sugar fermentation stimulation protein A K06206 sfsA; sugar fermentation stimulation protein A
D AFERRID_04940 Acetoin utilization protein AcuC K04768 acuC; acetoin utilization protein AcuC
C 99982 Energy metabolism
D AFERRID_19260 Sulfurtransferase FdhD K02379 fdhD; FdhD protein
D AFERRID_24420 Sulfurtransferase FdhD K02379 fdhD; FdhD protein
D AFERRID_27360 Sulfurtransferase FdhD K02379 fdhD; FdhD protein
D AFERRID_14550 Ferredoxin 1 K05524 fdxA; ferredoxin
D AFERRID_21940 Ferredoxin 1 K05524 fdxA; ferredoxin
D AFERRID_29360 Ferredoxin 1 K05524 fdxA; ferredoxin
D AFERRID_19140 Iron-sulfur cluster assembly scaffold protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D AFERRID_23280 Iron-sulfur cluster assembly scaffold protein IscU K13819 K13819; NifU-like protein
D AFERRID_23310 hypothetical protein K15790 nifQ; nitrogen fixation protein NifQ
D AFERRID_02910 hypothetical protein K02448 norD; nitric oxide reductase NorD protein
D AFERRID_04950 hypothetical protein K02448 norD; nitric oxide reductase NorD protein
D AFERRID_10020 hypothetical protein K02448 norD; nitric oxide reductase NorD protein
D AFERRID_24650 hypothetical protein K02448 norD; nitric oxide reductase NorD protein
D AFERRID_02900 Denitrification regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein
D AFERRID_04960 Denitrification regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein
D AFERRID_10010 Denitrification regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein
D AFERRID_24660 Denitrification regulatory protein NirQ K04748 norQ; nitric oxide reductase NorQ protein
D AFERRID_23350 FeMo cofactor biosynthesis protein NifB K02596 nifX; nitrogen fixation protein NifX
D AFERRID_23560 hypothetical protein K02593 nifT; nitrogen fixation protein NifT
D AFERRID_23530 hypothetical protein K02597 nifZ; nitrogen fixation protein NifZ
D AFERRID_23540 hypothetical protein K02597 nifZ; nitrogen fixation protein NifZ
D AFERRID_23470 FeMo cofactor biosynthesis protein NifB K02585 nifB; nitrogen fixation protein NifB
D AFERRID_23360 Nitrogenase molybdenum-iron protein beta chain K02592 nifN; nitrogenase molybdenum-iron protein NifN
D AFERRID_23370 Nitrogenase molybdenum-iron protein alpha chain K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE
D AFERRID_23040 Caffeyl-CoA reductase-Etf complex subunit CarD K03521 fixA; electron transfer flavoprotein beta subunit
D AFERRID_23010 Ferredoxin-like protein FixX K03855 fixX; ferredoxin like protein
D AFERRID_23240 Nitrogenase-stabilizing/protective protein NifW K02595 nifW; nitrogenase-stabilizing/protective protein
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D AFERRID_11450 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D AFERRID_21270 Lipopolysaccharide assembly protein B K19804 lapB; lipopolysaccharide assembly protein B
D AFERRID_18030 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D AFERRID_20560 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D AFERRID_10940 putative protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D AFERRID_04480 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D AFERRID_02230 Molybdopterin-guanine dinucleotide biosynthesis adapter protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
D AFERRID_27220 Inner membrane protein YphA K15977 K15977; putative oxidoreductase
D AFERRID_21750 Carboxylesterase 2 K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D AFERRID_18220 Cold shock-like protein CspE K03704 cspA; cold shock protein
D AFERRID_01320 hypothetical protein K07741 antB; anti-repressor protein
D AFERRID_03570 Nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2
D AFERRID_08630 Nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2
C 99974 Translation
D AFERRID_06400 Ribonuclease K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D AFERRID_17500 ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D AFERRID_21300 Trigger factor K03545 tig; trigger factor
D AFERRID_11280 SsrA-binding protein K03664 smpB; SsrA-binding protein
D AFERRID_14980 Hydrogenase isoenzymes formation protein HypC K04653 hypC; hydrogenase expression/formation protein HypC
D AFERRID_19470 Hydrogenase-2 operon protein HybG K04653 hypC; hydrogenase expression/formation protein HypC
D AFERRID_14970 Hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D AFERRID_19490 Hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D AFERRID_19500 Hydrogenase isoenzymes formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D AFERRID_19460 Carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF
D AFERRID_01160 hypothetical protein K06191 nrdH; glutaredoxin-like protein NrdH
D AFERRID_04490 Competence protein ComM K07391 comM; magnesium chelatase family protein
D AFERRID_04730 Competence protein ComM K07391 comM; magnesium chelatase family protein
D AFERRID_08530 hypothetical protein K07395 K07395; putative proteasome-type protease
D AFERRID_15490 hypothetical protein K07397 yhfA; putative redox protein
D AFERRID_14010 Cytochrome c biogenesis protein CcsB K07399 resB; cytochrome c biogenesis protein
D AFERRID_20120 putative xanthine dehydrogenase subunit A K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D AFERRID_10490 hypothetical protein K03630 radC; DNA repair protein RadC
D AFERRID_15320 hypothetical protein K09760 rmuC; DNA recombination protein RmuC
D AFERRID_27650 Ultraviolet N-glycosylase/AP lyase K07457 K07457; endonuclease III related protein
D AFERRID_04530 hypothetical protein K07461 K07461; putative endonuclease
D AFERRID_14510 DNA processing protein DprA K04096 smf; DNA processing protein
D AFERRID_10280 Replication-associated recombination protein A K07478 ycaJ; putative ATPase
D AFERRID_29190 DNA primase TraC K06919 K06919; putative DNA primase/helicase
D AFERRID_07810 hypothetical protein K07501 K07501; 3'-5' exonuclease
D AFERRID_26250 hypothetical protein K07481 K07481; transposase, IS5 family
D AFERRID_18160 Insertion element IS6110 uncharacterized 12.0 kDa protein K07483 K07483; transposase
D AFERRID_23910 hypothetical protein K07483 K07483; transposase
D AFERRID_25390 hypothetical protein K07483 K07483; transposase
D AFERRID_26280 hypothetical protein K07483 K07483; transposase
D AFERRID_26580 hypothetical protein K07483 K07483; transposase
D AFERRID_01040 hypothetical protein K07484 K07484; transposase
D AFERRID_04710 hypothetical protein K07484 K07484; transposase
D AFERRID_17350 hypothetical protein K07484 K07484; transposase
D AFERRID_17360 hypothetical protein K07484 K07484; transposase
D AFERRID_18120 hypothetical protein K07484 K07484; transposase
D AFERRID_18130 hypothetical protein K07484 K07484; transposase
D AFERRID_25340 hypothetical protein K07484 K07484; transposase
D AFERRID_25350 hypothetical protein K07484 K07484; transposase
D AFERRID_25460 hypothetical protein K07484 K07484; transposase
D AFERRID_25470 hypothetical protein K07484 K07484; transposase
D AFERRID_26290 hypothetical protein K07484 K07484; transposase
D AFERRID_26300 hypothetical protein K07484 K07484; transposase
D AFERRID_26560 hypothetical protein K07484 K07484; transposase
D AFERRID_26570 hypothetical protein K07484 K07484; transposase
D AFERRID_28290 hypothetical protein K07484 K07484; transposase
D AFERRID_28300 hypothetical protein K07484 K07484; transposase
D AFERRID_00960 hypothetical protein K07486 K07486; transposase
D AFERRID_06150 hypothetical protein K07486 K07486; transposase
D AFERRID_22140 hypothetical protein K07486 K07486; transposase
D AFERRID_01240 hypothetical protein K07497 K07497; putative transposase
D AFERRID_01270 hypothetical protein K07497 K07497; putative transposase
D AFERRID_18110 hypothetical protein K07497 K07497; putative transposase
D AFERRID_18150 hypothetical protein K07497 K07497; putative transposase
D AFERRID_23900 hypothetical protein K07497 K07497; putative transposase
D AFERRID_25400 hypothetical protein K07497 K07497; putative transposase
D AFERRID_27320 hypothetical protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D AFERRID_30020 Phage shock protein A K03969 pspA; phage shock protein A
D AFERRID_28860 Nucleoid-associated protein YbaB K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D AFERRID_20030 hypothetical protein K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
C 99978 Cell growth
D AFERRID_19070 putative intracellular septation protein A K06190 ispZ; intracellular septation protein
D AFERRID_08600 hypothetical protein K06415 spoVR; stage V sporulation protein R
D AFERRID_17540 Murein hydrolase activator EnvC K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D AFERRID_06930 GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D AFERRID_18290 PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D AFERRID_22920 PhoH-like protein K07175 phoH2; PhoH-like ATPase
D AFERRID_08570 hypothetical protein K07180 prkA; serine protein kinase
D AFERRID_21860 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D AFERRID_10300 Outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D AFERRID_07140 Outer-membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D AFERRID_02470 putative phospholipid-binding lipoprotein MlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA
D AFERRID_30260 hypothetical protein K06077 slyB; outer membrane lipoprotein SlyB
D AFERRID_22760 Chaperone protein Skp K06142 hlpA; outer membrane protein
D AFERRID_09590 hypothetical protein K07265 kpsS; capsular polysaccharide export protein
D AFERRID_09580 hypothetical protein K07266 kpsC; capsular polysaccharide export protein
D AFERRID_20440 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D AFERRID_03920 Outer membrane protein slp K07285 slp; outer membrane lipoprotein
D AFERRID_13150 p-hydroxybenzoic acid efflux pump subunit AaeA K02005 ABC.CD.TX; HlyD family secretion protein
D AFERRID_10180 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D AFERRID_28990 Cytoskeleton protein RodZ K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D AFERRID_22640 Phosphate-specific transport system accessory protein PhoU K02039 phoU; phosphate transport system protein
D AFERRID_21770 Glucans biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein
D AFERRID_06910 Protein ApaG K06195 apaG; ApaG protein
D AFERRID_03140 Protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D AFERRID_07530 hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO
B
B 09194 Poorly characterized
C 99996 General function prediction only
D AFERRID_02120 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D AFERRID_19560 hypothetical protein K06886 glbN; hemoglobin
D AFERRID_23650 Group 2 truncated hemoglobin YjbI K06886 glbN; hemoglobin
D AFERRID_19210 putative NTE family protein K07001 K07001; NTE family protein
D AFERRID_03430 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB K07025 K07025; putative hydrolase of the HAD superfamily
D AFERRID_10140 Iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D AFERRID_00420 hypothetical protein K07038 K07038; inner membrane protein
D AFERRID_28700 hypothetical protein K07058 K07058; membrane protein
D AFERRID_16100 Putative phosphoribosyl transferase K07100 K07100; putative phosphoribosyl transferase
D AFERRID_21410 High frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein
D AFERRID_08080 NADPH-dependent FMN reductase ArsH K11811 arsH; arsenical resistance protein ArsH
D AFERRID_14520 Protein Smg K03747 smg; Smg protein
D AFERRID_04880 putative membrane protein K03975 dedA; membrane-associated protein
D AFERRID_20690 hypothetical protein K08982 K08982; putative membrane protein
D AFERRID_02930 hypothetical protein K06193 phnA; protein PhnA
C 99997 Function unknown
D AFERRID_19080 hypothetical protein K06923 K06923; uncharacterized protein
D AFERRID_05370 hypothetical protein K06945 K06945; uncharacterized protein
D AFERRID_18070 hypothetical protein K06945 K06945; uncharacterized protein
D AFERRID_28310 hypothetical protein K06996 K06996; uncharacterized protein
D AFERRID_02520 hypothetical protein K07003 K07003; uncharacterized protein
D AFERRID_15530 hypothetical protein K07018 K07018; uncharacterized protein
D AFERRID_19590 hypothetical protein K07019 K07019; uncharacterized protein
D AFERRID_01800 hypothetical protein K07063 K07063; uncharacterized protein
D AFERRID_13310 hypothetical protein K07063 K07063; uncharacterized protein
D AFERRID_26130 hypothetical protein K07063 K07063; uncharacterized protein
D AFERRID_28230 hypothetical protein K07063 K07063; uncharacterized protein
D AFERRID_03680 hypothetical protein K07090 K07090; uncharacterized protein
D AFERRID_04220 hypothetical protein K07090 K07090; uncharacterized protein
D AFERRID_19980 hypothetical protein K07090 K07090; uncharacterized protein
D AFERRID_20770 hypothetical protein K07090 K07090; uncharacterized protein
D AFERRID_29140 hypothetical protein K07090 K07090; uncharacterized protein
D AFERRID_05080 hypothetical protein K07092 K07092; uncharacterized protein
D AFERRID_10440 hypothetical protein K07092 K07092; uncharacterized protein
D AFERRID_25070 hypothetical protein K07092 K07092; uncharacterized protein
D AFERRID_26840 hypothetical protein K07092 K07092; uncharacterized protein
D AFERRID_27230 hypothetical protein K07092 K07092; uncharacterized protein
D AFERRID_13690 hypothetical protein K07112 K07112; uncharacterized protein
D AFERRID_12800 Penicillin-binding protein activator LpoA K07121 K07121; uncharacterized protein
D AFERRID_04740 hypothetical protein K07126 K07126; uncharacterized protein
D AFERRID_10960 Secretory immunoglobulin A-binding protein EsiB K07126 K07126; uncharacterized protein
D AFERRID_05390 hypothetical protein K07131 K07131; uncharacterized protein
D AFERRID_16390 hypothetical protein K07131 K07131; uncharacterized protein
D AFERRID_21870 hypothetical protein K07131 K07131; uncharacterized protein
D AFERRID_04150 hypothetical protein K07157 K07157; uncharacterized protein
D AFERRID_13890 Putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D AFERRID_07010 hypothetical protein K09004 K09004; uncharacterized protein
D AFERRID_08230 hypothetical protein K09005 K09005; uncharacterized protein
D AFERRID_04090 hypothetical protein K09117 K09117; uncharacterized protein
D AFERRID_07490 hypothetical protein K09131 K09131; uncharacterized protein
D AFERRID_11480 hypothetical protein K09131 K09131; uncharacterized protein
D AFERRID_08760 hypothetical protein K09137 K09137; uncharacterized protein
D AFERRID_17990 hypothetical protein K09141 K09141; uncharacterized protein
D AFERRID_05290 hypothetical protein K09158 K09158; uncharacterized protein
D AFERRID_01390 hypothetical protein K09161 K09161; uncharacterized protein
D AFERRID_04170 hypothetical protein K09700 K09700; uncharacterized protein
D AFERRID_11190 hypothetical protein K09768 K09768; uncharacterized protein
D AFERRID_26150 hypothetical protein K09768 K09768; uncharacterized protein
D AFERRID_19060 hypothetical protein K09780 K09780; uncharacterized protein
D AFERRID_08590 hypothetical protein K09786 K09786; uncharacterized protein
D AFERRID_17240 hypothetical protein K09791 K09791; uncharacterized protein
D AFERRID_25530 hypothetical protein K09794 K09794; uncharacterized protein
D AFERRID_15730 hypothetical protein K09803 K09803; uncharacterized protein
D AFERRID_24480 hypothetical protein K09822 K09822; uncharacterized protein
D AFERRID_06970 hypothetical protein K09921 K09921; uncharacterized protein
D AFERRID_17170 hypothetical protein K09928 K09928; uncharacterized protein
D AFERRID_08430 hypothetical protein K09940 K09940; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: August 7, 2026