+D GENES KO #

  KEGG Orthology (KO) - Acidaminococcus fermentans

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:afn00010] D Acfer_0593 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Acfer_0254 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Acfer_1621 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Acfer_0998 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Acfer_0931 triosephosphate isomerase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Acfer_0930 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Acfer_0932 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Acfer_0933 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Acfer_0557 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Acfer_1785 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Acfer_0489 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Acfer_0075 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Acfer_0076 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Acfer_1037 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Acfer_0053 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Acfer_1582 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Acfer_0455 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] C 00020 Citrate cycle (TCA cycle) [PATH:afn00020] D Acfer_0096 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_1971 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_1973 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_0631 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_0606 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Acfer_1968 isocitrate/isopropylmalate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D Acfer_0075 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Acfer_0076 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Acfer_0077 Pyruvate/ketoisovalerate oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Acfer_0074 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Acfer_1838 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Acfer_2053 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Acfer_1582 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Acfer_0489 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:afn00030] D Acfer_0593 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Acfer_1970 putative lactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D Acfer_0318 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Acfer_0461 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Acfer_1397 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Acfer_0424 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Acfer_0364 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Acfer_1445 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Acfer_1604 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Acfer_0998 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Acfer_1621 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Acfer_0254 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:afn00040] D Acfer_1747 SAF domain protein K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7] D Acfer_1746 Altronate dehydratase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D Acfer_0499 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_0569 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_1443 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Acfer_0318 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:afn00051] D Acfer_1942 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Acfer_0254 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Acfer_1621 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Acfer_1034 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D Acfer_0998 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Acfer_0931 triosephosphate isomerase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Acfer_0424 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Acfer_1033 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] C 00052 Galactose metabolism [PATH:afn00052] D Acfer_1941 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Acfer_1022 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Acfer_1443 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Acfer_0731 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Acfer_0254 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00053 Ascorbate and aldarate metabolism [PATH:afn00053] D Acfer_0499 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_0569 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_0500 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Acfer_0071 Glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D Acfer_0082 galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42] C 00500 Starch and sucrose metabolism [PATH:afn00500] D Acfer_0138 phosphotransferase system EIIC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D Acfer_1443 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Acfer_0400 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Acfer_0401 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Acfer_0404 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Acfer_0403 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Acfer_0402 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Acfer_0455 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Acfer_0593 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:afn00520] D Acfer_1474 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Acfer_0455 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Acfer_0136 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Acfer_0925 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Acfer_0924 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Acfer_1446 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Acfer_0137 glucokinase regulatory-like protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D Acfer_1706 UDP-N-acetylglucosamine1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Acfer_0824 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Acfer_1717 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Acfer_1443 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Acfer_0499 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_0569 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_1941 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Acfer_1022 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Acfer_0731 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Acfer_0500 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Acfer_0593 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Acfer_1942 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Acfer_0400 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Acfer_0401 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:afn00620] D Acfer_0489 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Acfer_0075 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Acfer_0076 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Acfer_0789 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Acfer_0053 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Acfer_1400 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Acfer_1471 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Acfer_0557 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Acfer_1838 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Acfer_0244 FAD linked oxidase domain protein K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436] D Acfer_1037 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Acfer_0826 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Acfer_0962 Zn-dependent hydrolase, glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Acfer_1515 beta-lactamase domain-containing protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Acfer_0693 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Acfer_1362 pyruvate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Acfer_1500 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_1834 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_2053 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Acfer_0014 Malate dehydrogenase (oxaloacetate-decarboxylating) K22212 mleA; malolactic enzyme [EC:4.1.1.101] D Acfer_1582 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Acfer_1785 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1341 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:afn00630] D Acfer_0096 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_1971 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_1973 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_0631 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1510 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Acfer_1586 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Acfer_0426 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Acfer_1604 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Acfer_1347 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] D Acfer_1346 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32] D Acfer_1764 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] C 00640 Propanoate metabolism [PATH:afn00640] D Acfer_1400 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Acfer_1471 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Acfer_0789 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Acfer_1477 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Acfer_1974 protein of unknown function DUF453 K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D Acfer_1037 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Acfer_0865 iron-containing alcohol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] C 00650 Butanoate metabolism [PATH:afn00650] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1476 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Acfer_1475 Enoyl-CoA hydratase/isomerase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Acfer_0549 Enoyl-CoA hydratase/isomerase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Acfer_1477 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Acfer_1817 carboxyl transferase K01615 gcdA; glutaconyl-CoA decarboxylase subunit alpha [EC:7.2.4.5] D Acfer_1500 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_1834 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_1835 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Acfer_1836 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Acfer_1819 coenzyme A transferase K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D Acfer_1818 coenzyme A transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D Acfer_1764 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D Acfer_0178 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Acfer_1838 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Acfer_0789 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Acfer_0489 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Acfer_0075 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Acfer_0076 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Acfer_0888 Alcohol dehydrogenase zinc-binding domain protein K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80] D Acfer_0157 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0161 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0156 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Acfer_0162 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:afn00660] D Acfer_0157 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0161 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0156 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Acfer_0162 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Acfer_0152 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Acfer_0153 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Acfer_0154 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:afn00562] D Acfer_0938 oxidoreductase domain protein K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+) [EC:1.1.1.-] D Acfer_0931 triosephosphate isomerase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:afn00190] D Acfer_1712 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Acfer_1710 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Acfer_1711 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Acfer_1709 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Acfer_1715 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Acfer_1713 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Acfer_1714 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Acfer_0186 H(+)-transporting two-sector ATPase K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D Acfer_0187 H(+)-transporting two-sector ATPase K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D Acfer_0184 H+transporting two-sector ATPase C (AC39) subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D Acfer_0188 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D Acfer_0183 H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D Acfer_0185 Vacuolar H+transporting two-sector ATPase F subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D Acfer_0180 conserved hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D Acfer_0181 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D Acfer_0182 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D Acfer_0604 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D Acfer_1331 HAD-superfamily hydrolase, subfamily IA, variant 3 K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1] D Acfer_1858 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:afn00710] D Acfer_0931 triosephosphate isomerase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Acfer_0930 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Acfer_0998 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Acfer_1621 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Acfer_0461 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Acfer_0424 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Acfer_0318 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Acfer_1397 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Acfer_1582 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00720 Other carbon fixation pathways [PATH:afn00720] D Acfer_0489 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Acfer_1785 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Acfer_2053 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_0075 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Acfer_0076 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Acfer_0077 Pyruvate/ketoisovalerate oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Acfer_0074 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Acfer_0606 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Acfer_0096 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_1971 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_1973 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_0631 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Acfer_0236 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Acfer_0120 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Acfer_0237 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D Acfer_1852 Methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Acfer_1471 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Acfer_1400 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:afn00680] D Acfer_0426 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Acfer_1604 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Acfer_0933 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Acfer_0998 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Acfer_1621 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Acfer_0254 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Acfer_1400 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Acfer_1471 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Acfer_1785 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Acfer_0932 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Acfer_0068 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_0073 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2029 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2034 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_0221 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00910 Nitrogen metabolism [PATH:afn00910] D Acfer_1737 nitrite and sulphite reductase 4Fe-4S region K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] D Acfer_0367 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Acfer_1390 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Acfer_0950 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Acfer_1756 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Acfer_1586 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Acfer_2057 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Acfer_1327 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism [PATH:afn00920] D Acfer_0858 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Acfer_0860 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Acfer_0859 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Acfer_1354 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D Acfer_1895 sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A D Acfer_1896 sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B D Acfer_1897 sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C D Acfer_1796 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Acfer_0572 Serine acetyltransferase-like protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Acfer_1797 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Acfer_1731 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Acfer_1763 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:afn00061] D Acfer_1391 acyl carrier protein K02078 acpP; acyl carrier protein D Acfer_1393 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Acfer_1394 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Acfer_1389 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Acfer_1392 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Acfer_1689 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Acfer_0829 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0376 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:afn00071] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1477 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Acfer_0829 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0376 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0053 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:afn00561] D Acfer_1604 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Acfer_0865 iron-containing alcohol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D Acfer_1395 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Acfer_1236 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Acfer_1240 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:afn00564] D Acfer_1235 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Acfer_1986 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Acfer_1236 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Acfer_1240 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Acfer_1376 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Acfer_0770 CDP-diacylglycerol/serineO-phosphatidyl transferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Acfer_0769 phosphatidylserine decarboxylase related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids D Acfer_1804 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:afn00230] D Acfer_0856 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Acfer_0364 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Acfer_1445 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Acfer_1280 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Acfer_1276 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Acfer_1278 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Acfer_0906 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Acfer_1279 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Acfer_1281 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Acfer_1485 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Acfer_0045 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Acfer_1342 IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Acfer_1856 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Acfer_0834 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Acfer_1456 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Acfer_0978 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Acfer_0833 Inosine/uridine-preferring nucleoside hydrolase K01239 E3.2.2.1; purine nucleosidase [EC:3.2.2.1] D Acfer_1597 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Acfer_1275 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Acfer_0691 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Acfer_2090 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Acfer_0670 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Acfer_1420 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Acfer_1203 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Acfer_1808 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Acfer_1517 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Acfer_1860 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Acfer_1859 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Acfer_0935 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D Acfer_0046 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Acfer_1908 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Acfer_1618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Acfer_2068 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Acfer_2007 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9] D Acfer_1369 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9] C 00240 Pyrimidine metabolism [PATH:afn00240] D Acfer_1315 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Acfer_1316 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Acfer_1318 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Acfer_1980 amidohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Acfer_1317 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Acfer_1313 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Acfer_1314 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Acfer_1311 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Acfer_1312 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Acfer_1380 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Acfer_1618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Acfer_1830 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Acfer_1622 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Acfer_1241 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Acfer_0481 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Acfer_0834 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Acfer_1456 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Acfer_0363 purine or other phosphorylase family 1 K00757 udp; uridine phosphorylase [EC:2.4.2.3] D Acfer_0427 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Acfer_1507 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Acfer_0621 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Acfer_1203 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Acfer_1808 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Acfer_0591 Deoxycytidine deaminase-like protein K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Acfer_0428 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Acfer_0636 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Acfer_1198 deoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Acfer_0723 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:afn00250] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0927 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Acfer_2087 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Acfer_0598 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Acfer_0599 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Acfer_0046 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Acfer_0045 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Acfer_1318 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Acfer_0178 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Acfer_2057 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Acfer_1327 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Acfer_1756 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Acfer_1586 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Acfer_1315 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Acfer_1316 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Acfer_0049 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Acfer_0925 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Acfer_1280 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:afn00260] D Acfer_1194 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Acfer_1195 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Acfer_1233 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Acfer_1232 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Acfer_1533 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Acfer_0673 aromatic amino acid beta-eliminating lyase/threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Acfer_0426 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Acfer_1604 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Acfer_0932 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Acfer_0068 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_0073 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2029 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2034 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_0221 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Acfer_0770 CDP-diacylglycerol/serineO-phosphatidyl transferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Acfer_0415 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Acfer_0416 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Acfer_1447 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Acfer_0287 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Acfer_0286 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:afn00270] D Acfer_1796 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Acfer_0572 Serine acetyltransferase-like protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Acfer_1797 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Acfer_2063 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Acfer_1365 Homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10] D Acfer_1850 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Acfer_0308 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Acfer_1468 S-adenosylmethionine decarboxylase related protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Acfer_1889 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Acfer_1486 purine or other phosphorylase family 1 K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Acfer_0978 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Acfer_1329 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Acfer_1330 purine or other phosphorylase family 1 K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D Acfer_0480 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Acfer_0124 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Acfer_1194 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Acfer_1195 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Acfer_1233 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Acfer_1731 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Acfer_1763 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Acfer_0064 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Acfer_1385 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_1037 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Acfer_0415 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Acfer_0416 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Acfer_0068 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_0073 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2029 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2034 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_0221 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:afn00280] D Acfer_1385 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Acfer_1477 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Acfer_0210 6-phosphogluconate dehydrogenase NAD-binding protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:afn00290] D Acfer_1447 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Acfer_0152 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Acfer_0153 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Acfer_0154 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Acfer_0157 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0161 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0156 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Acfer_0162 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Acfer_0158 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Acfer_1425 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Acfer_0078 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Acfer_1385 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Acfer_1341 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:afn00300] D Acfer_1233 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Acfer_1194 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Acfer_1195 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Acfer_1193 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Acfer_2067 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Acfer_1196 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Acfer_0596 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Acfer_1590 dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Acfer_0332 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Acfer_0333 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Acfer_1632 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Acfer_0990 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16] D Acfer_0442 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Acfer_1306 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Acfer_1305 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:afn00310] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_0178 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00220 Arginine biosynthesis [PATH:afn00220] D Acfer_0597 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Acfer_0598 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Acfer_0599 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Acfer_0049 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Acfer_1586 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Acfer_1315 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Acfer_1316 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Acfer_1756 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0595 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Acfer_0785 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Acfer_0596 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:afn00330] D Acfer_2010 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D Acfer_0635 Orn/Lys/Arg decarboxylase major region K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Acfer_1890 Orn/Lys/Arg decarboxylase major region K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Acfer_0216 Arginase/agmatinase/formiminoglutamase K01480 speB; agmatinase [EC:3.5.3.11] D Acfer_1888 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Acfer_2004 Arginase/agmatinase/formiminoglutamase K01480 speB; agmatinase [EC:3.5.3.11] D Acfer_0135 Lysine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Acfer_1889 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Acfer_1468 S-adenosylmethionine decarboxylase related protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Acfer_1886 Orn/DAP/Arg decarboxylase 2 K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D Acfer_0981 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Acfer_0228 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Acfer_0229 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:afn00340] D Acfer_0916 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Acfer_0915 histidyl-tRNA synthetase 2 K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Acfer_0923 phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Acfer_0921 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Acfer_0920 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Acfer_0922 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Acfer_0919 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Acfer_0918 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Acfer_0141 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D Acfer_0917 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Acfer_0243 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Acfer_0241 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Acfer_1845 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Acfer_1844 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Acfer_0235 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] C 00350 Tyrosine metabolism [PATH:afn00350] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0918 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Acfer_0480 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Acfer_0053 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Acfer_0178 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:afn00360] D Acfer_1476 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0918 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Acfer_0480 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00380 Tryptophan metabolism [PATH:afn00380] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_0950 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:afn00400] D Acfer_0908 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Acfer_1613 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Acfer_1611 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Acfer_0294 3-dehydroquinate dehydratase, type I K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D Acfer_1606 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Acfer_1610 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Acfer_1609 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Acfer_0281 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Acfer_0282 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Acfer_0283 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Acfer_0285 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Acfer_0284 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Acfer_0287 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Acfer_0286 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Acfer_1608 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Acfer_1234 amino acid-binding ACT domain protein K06209 pheB; chorismate mutase [EC:5.4.99.5] D Acfer_1612 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0918 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Acfer_0480 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:afn00410] D Acfer_0776 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Acfer_1477 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] C 00430 Taurine and hypotaurine metabolism [PATH:afn00430] D Acfer_2041 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Acfer_1756 Glu/Leu/Phe/Val dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D Acfer_1471 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Acfer_1400 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:afn00450] D Acfer_1763 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Acfer_2063 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Acfer_1850 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Acfer_0452 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Acfer_0192 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Acfer_1489 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Acfer_1438 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:afn00460] D Acfer_0950 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Acfer_2041 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Acfer_2087 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Acfer_0426 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:afn00470] D Acfer_1461 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Acfer_1300 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Acfer_0049 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Acfer_0031 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Acfer_1754 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Acfer_1303 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Acfer_1589 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D Acfer_0332 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Acfer_1632 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Acfer_1540 conserved hypothetical protein K01780 cntK; histidine racemase [EC:5.1.1.24] C 00480 Glutathione metabolism [PATH:afn00480] D Acfer_2041 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Acfer_1870 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Acfer_0296 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Acfer_1749 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Acfer_0606 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Acfer_0135 Lysine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Acfer_1889 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:afn00540] D Acfer_1688 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Acfer_1689 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Acfer_1692 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Acfer_1687 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Acfer_1686 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Acfer_1681 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Acfer_1682 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Acfer_1680 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Acfer_1683 3-deoxy-D-manno-octulosonatecytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Acfer_1684 tetraacyldisaccharide 4'-kinase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Acfer_1690 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Acfer_1655 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Acfer_1654 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Acfer_1652 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Acfer_1653 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Acfer_1651 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Acfer_1650 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Acfer_0993 sulfatase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-] C 00542 O-Antigen repeat unit biosynthesis [PATH:afn00542] D Acfer_1718 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:afn00541] D Acfer_1443 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Acfer_1941 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Acfer_1022 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Acfer_0731 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Acfer_0499 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_0569 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Acfer_0500 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Acfer_0576 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Acfer_0578 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Acfer_0580 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Acfer_0579 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Acfer_1942 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Acfer_1446 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Acfer_1717 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:afn00550] D Acfer_1706 UDP-N-acetylglucosamine1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Acfer_0824 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Acfer_1301 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Acfer_1303 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Acfer_1306 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Acfer_1300 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Acfer_1305 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Acfer_1377 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Acfer_0255 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Acfer_1304 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Acfer_1302 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Acfer_1361 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Acfer_1825 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Acfer_0119 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) C 00552 Teichoic acid biosynthesis [PATH:afn00552] D Acfer_0255 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Acfer_1718 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Acfer_0768 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D Acfer_0288 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D Acfer_0144 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D Acfer_0743 LicD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:afn00543] D Acfer_1718 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Acfer_1796 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Acfer_0572 Serine acetyltransferase-like protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:afn00730] D Acfer_0488 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Acfer_0462 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Acfer_0037 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Acfer_0225 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Acfer_0851 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Acfer_1570 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Acfer_0804 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Acfer_0463 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Acfer_0317 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Acfer_1880 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Acfer_0009 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D Acfer_1908 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:afn00740] D Acfer_0355 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Acfer_0353 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Acfer_0356 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Acfer_0354 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Acfer_1352 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Acfer_0191 nitroreductase K19286 nfrA2; FMN reductase [NAD(P)H] [EC:1.5.1.39] D Acfer_0804 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Acfer_0856 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:afn00750] D Acfer_0794 Phosphomethylpyrimidine kinase type-1 K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D Acfer_0221 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Acfer_1533 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:afn00760] D Acfer_0927 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Acfer_0926 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Acfer_0928 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Acfer_0700 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Acfer_0834 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Acfer_1456 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Acfer_0142 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Acfer_1618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Acfer_0027 NUDIX hydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D Acfer_1534 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Acfer_0133 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Acfer_0853 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Acfer_0178 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:afn00770] D Acfer_0157 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0161 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Acfer_0156 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Acfer_0162 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Acfer_0158 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Acfer_1425 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Acfer_0078 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Acfer_0776 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Acfer_1593 transcriptional activator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Acfer_1418 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Acfer_1618 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Acfer_1403 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Acfer_0445 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Acfer_1629 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Acfer_1385 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00780 Biotin metabolism [PATH:afn00780] D Acfer_1389 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Acfer_1392 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Acfer_0058 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Acfer_0057 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Acfer_1846 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D Acfer_1537 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Acfer_1415 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D Acfer_1595 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:afn00790] D Acfer_1226 protein of unknown function DUF198 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D Acfer_1880 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Acfer_1224 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3] D Acfer_1225 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Acfer_0398 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Acfer_0355 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Acfer_1642 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Acfer_1227 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Acfer_1641 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Acfer_1643 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Acfer_1644 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] C 00670 One carbon pool by folate [PATH:afn00670] D Acfer_0236 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Acfer_0120 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Acfer_0237 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D Acfer_0426 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Acfer_1278 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Acfer_1342 IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Acfer_0235 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2] D Acfer_0311 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Acfer_1850 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Acfer_0723 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Acfer_1852 Methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Acfer_1523 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:afn00860] D Acfer_0484 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Acfer_0302 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Acfer_0303 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D Acfer_0304 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:afn00900] D Acfer_0851 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Acfer_1570 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Acfer_1375 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Acfer_0744 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Acfer_0719 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D Acfer_1450 4-diphosphocytidyl-2C-methyl-D-erythritolkinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Acfer_1373 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Acfer_1239 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1 D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1238 isopentenyl-diphosphate delta-isomerase, type 2 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Acfer_0850 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Acfer_1377 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Acfer_0461 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:afn00523] D Acfer_0576 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Acfer_0578 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Acfer_0580 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Acfer_0579 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D Acfer_0578 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:afn00946] D Acfer_0913 NADH:flavin oxidoreductase/NADH oxidase K26178 fcr; flavanone/flavanol-cleaving reductase D Acfer_0965 hypothetical protein K22906 phy; phloretin hydrolase [EC:3.7.1.4] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Acfer_0879 Beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Acfer_1556 Beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:afn00332] D Acfer_0228 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Acfer_0229 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:afn00261] D Acfer_1194 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Acfer_1195 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Acfer_1193 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Acfer_2067 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Acfer_1196 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:afn00521] D Acfer_0576 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Acfer_0578 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Acfer_0580 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Acfer_0579 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:afn00525] D Acfer_0576 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Acfer_0578 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:afn00401] D Acfer_1612 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0918 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Acfer_0480 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Acfer_0281 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Acfer_0282 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Acfer_1393 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Acfer_1392 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Acfer_1391 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D Acfer_0308 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:afn00362] D Acfer_0537 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Acfer_1817 carboxyl transferase K01615 gcdA; glutaconyl-CoA decarboxylase subunit alpha [EC:7.2.4.5] D Acfer_1500 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_1834 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_1835 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Acfer_1836 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Acfer_1476 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D Acfer_0950 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:afn00625] D Acfer_0053 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:afn00643] D Acfer_0950 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Acfer_1819 coenzyme A transferase K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D Acfer_1818 coenzyme A transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation D Acfer_1559 isochorismatase hydrolase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:afn00626] D Acfer_0053 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:afn03020] D Acfer_0343 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Acfer_0344 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Acfer_1902 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Acfer_1419 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:afn03010] D Acfer_1239 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1 D Acfer_1382 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Acfer_1923 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Acfer_1903 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Acfer_1912 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Acfer_0038 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Acfer_1933 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Acfer_1915 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Acfer_0487 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Acfer_1930 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Acfer_1904 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Acfer_1934 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Acfer_1905 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Acfer_1916 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Acfer_0668 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Acfer_0467 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Acfer_1920 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Acfer_0040 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Acfer_1925 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Acfer_1351 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Acfer_0713 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Acfer_0261 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Acfer_1926 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Acfer_1929 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Acfer_1928 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Acfer_1917 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Acfer_1914 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Acfer_0263 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Acfer_0043 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Acfer_0262 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Acfer_0260 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Acfer_0486 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Acfer_1919 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Acfer_1910 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Acfer_1922 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Acfer_1901 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Acfer_1913 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Acfer_0472 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Acfer_0666 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Acfer_0339 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Acfer_1924 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Acfer_1927 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Acfer_1918 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Acfer_0341 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Acfer_0457 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Acfer_1921 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Acfer_1911 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Acfer_0419 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Acfer_1398 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Acfer_0257 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Acfer_2082 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Acfer_0665 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Acfer_1906 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Acfer_1935 ribosomal protein L7Ae/L30e/S12e/Gadd45 K07590 RP-L7A; large subunit ribosomal protein L7A D Acfer_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0063 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0062 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0006 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0032 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0075 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0033 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0074 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0061 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:afn00970] D Acfer_R0008 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0031 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0076 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0079 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0009 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0019 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Acfer_R0050 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Acfer_R0039 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Acfer_R0052 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Acfer_R0045 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Acfer_R0042 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Acfer_R0048 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Acfer_R0035 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Acfer_R0072 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Acfer_R0073 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Acfer_R0071 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Acfer_R0020 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Acfer_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Acfer_R0028 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0041 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0047 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0053 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0082 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0034 tRNA-His K14226 tRNA-His; tRNA His D Acfer_R0030 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Acfer_R0077 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Acfer_R0043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0036 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Acfer_R0080 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Acfer_R0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Acfer_R0013 tRNA-Met K14230 tRNA-Met; tRNA Met D Acfer_R0070 tRNA-Met K14230 tRNA-Met; tRNA Met D Acfer_R0015 tRNA-Met K14230 tRNA-Met; tRNA Met D Acfer_R0040 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Acfer_R0046 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Acfer_R0056 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Acfer_R0049 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Acfer_R0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Acfer_R0057 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0069 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0067 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0011 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Acfer_R0014 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Acfer_R0004 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Acfer_R0054 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Acfer_R0012 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Acfer_R0081 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_R0021 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_R0064 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_R0038 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_0484 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Acfer_0720 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Acfer_1761 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Acfer_1760 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Acfer_1762 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Acfer_0894 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Acfer_1383 Threonyl/alanyl tRNA synthetase SAD K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Acfer_1512 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Acfer_1780 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Acfer_1779 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Acfer_0989 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Acfer_0134 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Acfer_0721 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Acfer_1438 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Acfer_0311 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Acfer_0397 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Acfer_0634 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Acfer_1495 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Acfer_1427 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Acfer_1623 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Acfer_1372 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Acfer_1513 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Acfer_0885 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Acfer_0886 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Acfer_0828 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Acfer_1268 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:afn03060] D Acfer_1909 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Acfer_0258 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Acfer_0971 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Acfer_1522 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Acfer_1521 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Acfer_1524 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Acfer_2079 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Acfer_0653 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Acfer_0466 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Acfer_R0068 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Acfer_1505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Acfer_1549 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Acfer_0532 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Acfer_0533 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Acfer_0473 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Acfer_1509 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:afn04122] D Acfer_0037 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Acfer_0036 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] C 03050 Proteasome C 03018 RNA degradation [PATH:afn03018] D Acfer_0933 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Acfer_0454 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Acfer_0974 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Acfer_1015 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Acfer_0483 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Acfer_0360 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-] D Acfer_1020 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Acfer_0704 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Acfer_1431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Acfer_1208 RNA chaperone Hfq K03666 hfq; host factor-I protein D Acfer_1858 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] B B 09124 Replication and repair C 03030 DNA replication [PATH:afn03030] D Acfer_0554 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Acfer_1370 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0987 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_1728 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Acfer_0637 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Acfer_1453 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Acfer_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Acfer_0044 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Acfer_1782 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Acfer_0039 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Acfer_0475 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Acfer_1024 ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] D Acfer_0615 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:afn03410] D Acfer_1481 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Acfer_1864 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Acfer_0444 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Acfer_0155 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Acfer_0104 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Acfer_0626 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Acfer_0662 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Acfer_1518 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Acfer_0615 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:afn03420] D Acfer_1620 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Acfer_0683 ABC transporter related protein K03701 uvrA; excinuclease ABC subunit A D Acfer_0516 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Acfer_0515 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Acfer_0517 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Acfer_0614 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Acfer_0615 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:afn03430] D Acfer_1212 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Acfer_1283 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Acfer_1211 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Acfer_0614 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Acfer_0848 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Acfer_0849 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Acfer_1518 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Acfer_0039 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Acfer_0554 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Acfer_1370 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0987 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Acfer_1728 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Acfer_1453 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Acfer_0637 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Acfer_0615 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:afn03440] D Acfer_1518 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Acfer_0039 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Acfer_0005 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Acfer_0624 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Acfer_1726 recombination protein RecR K06187 recR; recombination protein RecR D Acfer_0358 recA protein K03553 recA; recombination protein RecA D Acfer_1529 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Acfer_1528 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Acfer_1530 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Acfer_0458 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Acfer_0497 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Acfer_1467 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Acfer_0554 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Acfer_1370 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0987 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Acfer_1728 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Acfer_1453 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Acfer_0637 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Acfer_0309 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:afn02010] D Acfer_0858 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Acfer_0860 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Acfer_0859 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Acfer_0211 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Acfer_2002 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Acfer_0212 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Acfer_2000 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Acfer_0213 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Acfer_1999 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Acfer_2001 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Acfer_0335 extracellular solute-binding protein family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein D Acfer_0336 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Acfer_0337 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D Acfer_0338 spermidine/putrescine ABC transporter ATPase subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Acfer_1699 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Acfer_1701 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Acfer_1700 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Acfer_1885 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Acfer_1883 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Acfer_1882 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Acfer_0649 extracellular solute-binding protein family 3 K10036 glnH; glutamine transport system substrate-binding protein D Acfer_0650 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein D Acfer_0651 ABC transporter related protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D Acfer_0778 extracellular solute-binding protein family 3 K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D Acfer_0780 polar amino acid ABC transporter, inner membrane subunit K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D Acfer_0779 polar amino acid ABC transporter, inner membrane subunit K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D Acfer_0777 ABC transporter related protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D Acfer_0015 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Acfer_0016 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Acfer_0017 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Acfer_0018 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Acfer_0019 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Acfer_1541 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0694 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0790 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0266 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0265 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Acfer_1180 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Acfer_1179 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Acfer_0264 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Acfer_0087 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Acfer_0085 ABC-3 protein K09816 znuB; zinc transport system permease protein D Acfer_0086 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Acfer_1005 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Acfer_1006 cobalt transport protein K02008 cbiQ; cobalt/nickel transport system permease protein D Acfer_1007 ABC transporter related protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Acfer_0056 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_0301 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_0374 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_1594 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_0350 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Acfer_2045 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Acfer_0348 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_2047 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_0349 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_2046 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_1675 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Acfer_1676 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Acfer_0658 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Acfer_0657 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Acfer_1685 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Acfer_0882 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_0883 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1465 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1045 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1044 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1464 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_0248 ABC transporter domain protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:afn02060] D Acfer_0811 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Acfer_0810 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Acfer_0455 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Acfer_0138 phosphotransferase system EIIC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D Acfer_1033 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Acfer_1034 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:afn03070] D Acfer_1294 Type II secretion system F domain protein K02455 gspF; general secretion pathway protein F D Acfer_1293 Tfp pilus assembly protein PilE-like protein K02456 gspG; general secretion pathway protein G D Acfer_0511 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Acfer_1522 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Acfer_1521 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Acfer_0258 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Acfer_0971 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Acfer_1909 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Acfer_1524 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Acfer_2079 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Acfer_0653 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Acfer_1505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Acfer_0466 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Acfer_0532 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Acfer_0533 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Acfer_1777 filamentous hemagglutinin family outer membrane protein K11016 shlA; hemolysin B B 09132 Signal transduction C 02020 Two-component system [PATH:afn02020] D Acfer_0125 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Acfer_0126 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Acfer_1880 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Acfer_1885 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Acfer_1792 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Acfer_0862 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Acfer_1102 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Acfer_2020 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Acfer_0863 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Acfer_2021 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Acfer_1103 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Acfer_1101 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Acfer_0864 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Acfer_0820 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD D Acfer_0003 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Acfer_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Acfer_0937 integral membrane sensor signal transduction histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D Acfer_0822 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Acfer_0307 citrate lyase ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22] D Acfer_0410 citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D Acfer_0409 Citrate (pro-3S)-lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D Acfer_0408 citrate lyase, alpha subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D Acfer_0412 holo-ACP synthase CitX K13927 citXG; holo-ACP synthase / triphosphoribosyl-dephospho-CoA synthase [EC:2.7.7.61 2.4.2.52] D Acfer_0693 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Acfer_0832 two component transcriptional regulator, LuxR family K07694 vraR; two-component system, NarL family, vancomycin resistance associated response regulator VraR D Acfer_1190 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Acfer_1189 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Acfer_1187 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Acfer_1188 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Acfer_1183 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Acfer_1186 Type II secretion system F domain protein K12510 tadB; tight adherence protein B D Acfer_1182 Type II secretion system F domain protein K12511 tadC; tight adherence protein C D Acfer_1586 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_2062 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Acfer_0291 Tripartite ATP-independent periplasmic transporter DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Acfer_1981 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Acfer_0049 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Acfer_0563 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Acfer_1047 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Acfer_1717 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D Acfer_0135 Lysine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:afn02024] D Acfer_0124 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Acfer_1208 RNA chaperone Hfq K03666 hfq; host factor-I protein D Acfer_0281 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Acfer_0282 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Acfer_0908 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Acfer_0015 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Acfer_0016 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Acfer_0017 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Acfer_0018 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Acfer_0019 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Acfer_0829 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0376 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0353 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Acfer_0937 integral membrane sensor signal transduction histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D Acfer_2079 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Acfer_0258 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Acfer_0971 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Acfer_1909 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Acfer_1524 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Acfer_0653 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Acfer_1505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Acfer_0466 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D Acfer_1262 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:afn02040] D Acfer_1262 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Acfer_1781 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor D Acfer_2062 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Acfer_0933 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Acfer_1850 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:afn01501] D Acfer_1474 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Acfer_0879 Beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Acfer_1556 Beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Acfer_0246 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Acfer_1361 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Acfer_1825 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:afn01502] D Acfer_0822 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Acfer_1300 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Acfer_1461 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Acfer_1305 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Acfer_1304 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Acfer_1302 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:afn01503] D Acfer_1125 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Acfer_1627 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Acfer_1792 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Acfer_0246 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Acfer_1688 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:afn01000] C 01001 Protein kinases [BR:afn01001] D Acfer_0316 serine/threonine protein kinase with PASTA sensor(s) K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Acfer_1840 putative anti-sigma regulatory factor, serine/threonine protein kinase K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D Acfer_0565 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Acfer_0125 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Acfer_0937 integral membrane sensor signal transduction histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:afn01009] D Acfer_0315 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:afn01002] D Acfer_1509 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Acfer_1032 peptidase A24A prepilin type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Acfer_1040 Bleomycin hydrolase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D Acfer_1956 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D Acfer_0670 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Acfer_1849 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Acfer_2092 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Acfer_2061 glutamine amidotransferase-like protein K07010 K07010; putative glutamine amidotransferase D Acfer_0115 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D Acfer_0818 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D Acfer_1280 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Acfer_0925 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Acfer_0808 peptidase U34 dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-] D Acfer_0822 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Acfer_0907 Peptidase M16C associated domain protein K06972 PITRM1; presequence protease [EC:3.4.24.-] D Acfer_1866 peptidase M20 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D Acfer_0206 peptidase dimerization domain protein K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D Acfer_0764 peptidase M20 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D Acfer_1590 dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Acfer_0791 Gly-Xaa carboxypeptidase K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-] D Acfer_2043 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Acfer_2073 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Acfer_0066 peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Acfer_0276 peptidase dimerization domain protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Acfer_0296 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Acfer_1749 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Acfer_1321 amidohydrolase K12940 abgA; aminobenzoyl-glutamate utilization protein A D Acfer_2084 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B D Acfer_1411 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B D Acfer_1809 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B D Acfer_2007 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9] D Acfer_1369 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9] D Acfer_1561 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Acfer_0901 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Acfer_0179 peptidase M29 aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-] D Acfer_1862 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Acfer_1596 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Acfer_1206 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Acfer_1374 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Acfer_1792 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Acfer_0504 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Acfer_0506 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Acfer_1012 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Acfer_0473 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Acfer_0660 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Acfer_2041 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Acfer_0900 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Acfer_1284 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] C 01003 Glycosyltransferases [BR:afn01003] D Acfer_0404 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Acfer_1361 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Acfer_0768 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D Acfer_1718 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:afn01005] D Acfer_1688 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Acfer_1686 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Acfer_1689 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Acfer_1692 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Acfer_1687 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Acfer_1690 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Acfer_1684 tetraacyldisaccharide 4'-kinase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Acfer_1682 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Acfer_1683 3-deoxy-D-manno-octulosonatecytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Acfer_1680 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Acfer_1681 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Acfer_1651 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Acfer_1650 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Acfer_0993 sulfatase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-] D Acfer_1655 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Acfer_1652 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Acfer_1654 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Acfer_1653 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Acfer_0817 glycosyl transferase family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D Acfer_1718 Glycosyl transferase, family 4, conserved region K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:afn01011] D Acfer_1706 UDP-N-acetylglucosamine1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Acfer_0824 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Acfer_1301 UDP-N-acetylmuramate/alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Acfer_1303 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Acfer_1306 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Acfer_1300 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Acfer_1461 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Acfer_0031 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Acfer_1754 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Acfer_1304 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Acfer_1302 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Acfer_0255 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Acfer_1361 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Acfer_1825 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Acfer_0119 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Acfer_0822 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Acfer_0115 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D Acfer_0818 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D Acfer_0446 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Acfer_0899 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Acfer_1527 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Acfer_1125 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Acfer_1627 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:afn01004] D Acfer_1393 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Acfer_1394 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Acfer_1389 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Acfer_1392 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Acfer_1689 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59] D Acfer_1804 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D Acfer_0829 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0376 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_1395 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Acfer_1236 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Acfer_1240 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:afn01006] D Acfer_0850 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Acfer_1377 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Acfer_1209 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:afn01007] D Acfer_0484 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Acfer_0720 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Acfer_0828 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Acfer_1268 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Acfer_0721 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Acfer_1623 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Acfer_1438 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Acfer_1495 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Acfer_0397 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Acfer_0634 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Acfer_1427 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Acfer_1512 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Acfer_1513 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Acfer_1780 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Acfer_1779 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Acfer_0134 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Acfer_1372 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Acfer_0989 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Acfer_0894 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Acfer_1383 Threonyl/alanyl tRNA synthetase SAD K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Acfer_0885 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Acfer_0886 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Acfer_0482 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0715 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Acfer_0480 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Acfer_0333 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Acfer_0918 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Acfer_2063 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Acfer_0596 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Acfer_0058 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Acfer_1385 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Acfer_0221 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:afn00194] D Acfer_1709 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Acfer_1710 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Acfer_1711 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Acfer_1712 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Acfer_1713 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Acfer_1714 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Acfer_1715 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:afn03000] D Acfer_1784 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D Acfer_2065 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Acfer_1104 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Acfer_0189 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Acfer_2036 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D Acfer_1177 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Acfer_0084 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Acfer_1794 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D Acfer_0787 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Acfer_1953 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D Acfer_1547 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Acfer_0390 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Acfer_0674 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Acfer_0328 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Acfer_0809 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Acfer_0175 transcriptional regulator, PadR-like family K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator D Acfer_0819 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D Acfer_1595 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Acfer_0755 plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Acfer_1448 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D Acfer_1995 sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Acfer_0116 sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Acfer_1247 GTP-sensing pleiotropic transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor D Acfer_1118 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Acfer_1494 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Acfer_2071 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Acfer_0717 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Acfer_0854 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism D Acfer_0702 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Acfer_0892 transcriptional repressor, CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D Acfer_0929 transcriptional regulator, DeoR family K05311 cggR; central glycolytic genes regulator D Acfer_1507 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Acfer_1295 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Acfer_1309 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:afn03021] D Acfer_1902 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Acfer_0343 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Acfer_0344 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Acfer_1419 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Acfer_1781 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor D Acfer_0252 RNA polymerase, sigma-24 subunit, ECF subfamily K27000 sigH; RNA polymerase sigma-H factor D Acfer_2062 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Acfer_1359 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Acfer_0846 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Acfer_0259 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Acfer_1840 putative anti-sigma regulatory factor, serine/threonine protein kinase K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D Acfer_1428 GreA/GreB family elongation factor K03624 greA; transcription elongation factor GreA C 03019 Messenger RNA biogenesis [BR:afn03019] D Acfer_1821 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Acfer_1388 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Acfer_1020 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Acfer_0360 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-] D Acfer_0974 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Acfer_0815 metal dependent phosphohydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D Acfer_1015 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Acfer_0483 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Acfer_0933 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Acfer_0454 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Acfer_0704 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Acfer_1431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Acfer_1208 RNA chaperone Hfq K03666 hfq; host factor-I protein D Acfer_1858 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Acfer_0543 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:afn03011] D Acfer_1239 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1 D Acfer_1382 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Acfer_1923 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Acfer_1903 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Acfer_1912 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Acfer_0038 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Acfer_1933 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Acfer_1915 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Acfer_0487 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Acfer_1930 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Acfer_1904 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Acfer_1934 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Acfer_1905 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Acfer_1916 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Acfer_0668 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Acfer_0467 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Acfer_1920 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Acfer_0040 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Acfer_1925 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Acfer_1351 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Acfer_0713 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Acfer_0261 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Acfer_1926 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Acfer_1929 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Acfer_1928 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Acfer_1917 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Acfer_1914 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Acfer_0043 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Acfer_0262 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Acfer_0260 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Acfer_0263 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Acfer_0486 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Acfer_1919 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Acfer_1910 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Acfer_1922 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Acfer_1901 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Acfer_1913 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Acfer_0472 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Acfer_0666 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Acfer_0339 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Acfer_1924 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Acfer_1927 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Acfer_1918 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Acfer_0341 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Acfer_0457 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Acfer_1921 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Acfer_1911 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Acfer_0419 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Acfer_1398 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Acfer_0257 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Acfer_2082 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Acfer_0665 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Acfer_1906 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Acfer_1935 ribosomal protein L7Ae/L30e/S12e/Gadd45 K07590 RP-L7A; large subunit ribosomal protein L7A D Acfer_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0033 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0074 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0061 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0063 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0062 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0006 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0032 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0075 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:afn03009] D Acfer_1388 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Acfer_0622 GTP-binding protein Era K03595 era; GTPase D Acfer_0227 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Acfer_1359 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Acfer_0846 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Acfer_0259 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Acfer_1434 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Acfer_0313 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Acfer_1404 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Acfer_0710 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Acfer_2075 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Acfer_1308 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Acfer_0640 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Acfer_1210 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D Acfer_0852 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D Acfer_0251 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Acfer_1791 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Acfer_1273 methyltransferase small K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Acfer_0314 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Acfer_1736 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Acfer_1243 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Acfer_0999 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Acfer_1508 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Acfer_0792 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Acfer_1579 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Acfer_0470 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Acfer_1017 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Acfer_0709 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Acfer_1821 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Acfer_0897 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Acfer_0722 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D Acfer_1015 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Acfer_0483 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Acfer_0317 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Acfer_1237 ribosome-associated GTPase EngA K03977 engA; GTPase D Acfer_0474 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A D Acfer_1014 GTP-binding proten HflX K03665 hflX; GTPase D Acfer_0423 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Acfer_1517 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Acfer_1355 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Acfer_1360 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Acfer_0145 iojap-like protein K09710 ybeB; ribosome-associated protein D Acfer_0620 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Acfer_0652 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D Acfer_0140 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Acfer_1399 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:afn03016] D Acfer_1338 conserved hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Acfer_1820 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Acfer_0484 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Acfer_1372 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Acfer_1495 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Acfer_0634 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Acfer_1438 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Acfer_1623 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Acfer_1427 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Acfer_1512 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Acfer_0894 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Acfer_1383 Threonyl/alanyl tRNA synthetase SAD K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Acfer_0989 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Acfer_0134 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Acfer_0721 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Acfer_0397 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Acfer_1513 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Acfer_0885 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Acfer_0886 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Acfer_0828 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Acfer_1268 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Acfer_1516 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Acfer_0712 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Acfer_0117 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Acfer_0379 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Acfer_0351 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Acfer_1353 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Acfer_0037 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Acfer_0423 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Acfer_1209 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Acfer_2077 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Acfer_2076 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Acfer_2081 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Acfer_R0051 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Acfer_1780 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Acfer_1779 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Acfer_0720 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Acfer_1730 CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Acfer_1592 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Acfer_1213 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Acfer_0711 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Acfer_1249 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Acfer_0471 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Acfer_0813 protein of unknown function DUF633 K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D Acfer_1228 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Acfer_1496 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family D Acfer_0036 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Acfer_1336 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Acfer_1526 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Acfer_1643 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Acfer_1642 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Acfer_1227 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Acfer_1641 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Acfer_1644 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Acfer_1758 domain of unknown function DUF1730 K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Acfer_1525 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Acfer_1598 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Acfer_1580 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Acfer_1578 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Acfer_1581 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Acfer_1401 protein of unknown function DUF795 K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-] D Acfer_0974 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Acfer_0454 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:afn03012] D Acfer_1356 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Acfer_0664 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Acfer_1940 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Acfer_1381 translation elongation factor Ts K02357 tsf; elongation factor Ts D Acfer_0256 translation elongation factor Tu K02358 tuf; elongation factor Tu D Acfer_1931 translation elongation factor Tu K02358 tuf; elongation factor Tu D Acfer_1932 translation elongation factor G K02355 fusA; elongation factor G D Acfer_0459 translation elongation factor G K02355 fusA; elongation factor G D Acfer_0421 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Acfer_1379 ribosome recycling factor K02838 frr; ribosome recycling factor D Acfer_0422 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Acfer_1444 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Acfer_1907 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Acfer_0902 translation elongation factor P K02356 efp; elongation factor P D Acfer_0654 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D Acfer_0767 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:afn03110] D Acfer_1961 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Acfer_0505 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Acfer_0704 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Acfer_1431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Acfer_0705 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Acfer_0357 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Acfer_0703 GrpE protein K03687 GRPE; molecular chaperone GrpE D Acfer_2050 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Acfer_1432 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Acfer_1792 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Acfer_1862 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Acfer_1596 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Acfer_1715 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Acfer_1490 Thioredoxin domain protein K03671 TXN; thioredoxin D Acfer_0816 thioredoxin K03671 TXN; thioredoxin D Acfer_1009 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:afn04131] D Acfer_1549 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Acfer_0930 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Acfer_0557 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:afn03032] D Acfer_1617 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Acfer_0003 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Acfer_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Acfer_0044 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Acfer_1782 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Acfer_0039 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Acfer_0554 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Acfer_1370 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0987 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Acfer_1453 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Acfer_0637 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Acfer_1728 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Acfer_0475 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Acfer_1024 ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] D Acfer_0615 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Acfer_0011 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Acfer_0008 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Acfer_1250 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:afn03036] D Acfer_1388 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Acfer_1617 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Acfer_0003 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Acfer_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Acfer_1208 RNA chaperone Hfq K03666 hfq; host factor-I protein D Acfer_1177 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Acfer_1506 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Acfer_1245 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A D Acfer_1244 chromosome segregation and condensation protein, ScpB K06024 scpB; segregation and condensation protein B D Acfer_1616 Septum formation initiator K13052 divIC; cell division protein DivIC D Acfer_0657 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Acfer_1019 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Acfer_1307 Septum formation initiator K03586 ftsL; cell division protein FtsL D Acfer_1299 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ D Acfer_0118 cell cycle protein K03588 ftsW; cell division protein FtsW D Acfer_0658 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Acfer_1296 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Acfer_1125 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Acfer_1627 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Acfer_0246 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Acfer_0980 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF D Acfer_1705 cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins D Acfer_1828 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Acfer_1827 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Acfer_1826 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Acfer_1824 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Acfer_2072 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Acfer_2071 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Acfer_2076 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Acfer_2075 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Acfer_1249 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Acfer_1248 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D Acfer_1207 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Acfer_1615 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Acfer_0507 ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein D Acfer_0545 protein of unknown function DUF199 K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:afn03400] D Acfer_0164 methylated-DNA/protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Acfer_1864 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Acfer_1481 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Acfer_1865 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Acfer_1109 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Acfer_1198 deoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Acfer_0104 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Acfer_0155 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Acfer_0444 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Acfer_0626 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Acfer_0662 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Acfer_1518 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Acfer_0615 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Acfer_0683 ABC transporter related protein K03701 uvrA; excinuclease ABC subunit A D Acfer_0516 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Acfer_0515 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Acfer_0517 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Acfer_0614 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Acfer_0343 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Acfer_0344 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Acfer_1902 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Acfer_1419 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Acfer_1620 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Acfer_1212 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Acfer_1283 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Acfer_1211 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Acfer_0848 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Acfer_0849 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Acfer_0554 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Acfer_1370 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0987 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Acfer_0004 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Acfer_1453 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Acfer_0637 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Acfer_1728 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Acfer_0039 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Acfer_1467 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Acfer_0358 recA protein K03553 recA; recombination protein RecA D Acfer_1529 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Acfer_1528 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Acfer_1530 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Acfer_0309 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Acfer_1640 DNA repair ATPase-like protein protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Acfer_1639 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D Acfer_0893 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Acfer_0005 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Acfer_0458 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Acfer_0497 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Acfer_0624 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Acfer_1726 recombination protein RecR K06187 recR; recombination protein RecR D Acfer_0855 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Acfer_1332 Exodeoxyribonuclease V K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Acfer_0761 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Acfer_0011 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Acfer_0008 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Acfer_1250 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Acfer_1617 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Acfer_0062 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Acfer_0783 UMUC domain protein DNA-repair protein K03502 umuC; DNA polymerase V D Acfer_1012 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Acfer_0359 regulatory protein RecX K03565 recX; regulatory protein D Acfer_0797 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Acfer_1354 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:afn03029] D Acfer_1356 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Acfer_0664 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Acfer_1381 translation elongation factor Ts K02357 tsf; elongation factor Ts D Acfer_0256 translation elongation factor Tu K02358 tuf; elongation factor Tu D Acfer_1931 translation elongation factor Tu K02358 tuf; elongation factor Tu D Acfer_1932 translation elongation factor G K02355 fusA; elongation factor G D Acfer_0459 translation elongation factor G K02355 fusA; elongation factor G D Acfer_0622 GTP-binding protein Era K03595 era; GTPase D Acfer_0828 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Acfer_0634 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Acfer_1512 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Acfer_1623 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Acfer_1761 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Acfer_1760 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Acfer_1762 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Acfer_0039 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Acfer_1696 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Acfer_0704 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Acfer_0703 GrpE protein K03687 GRPE; molecular chaperone GrpE D Acfer_1431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Acfer_1432 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Acfer_0705 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Acfer_0037 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Acfer_1615 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Acfer_2079 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:afn02000] D Acfer_1685 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Acfer_0882 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_0883 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1465 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1045 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1044 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_1464 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D Acfer_0248 ABC transporter domain protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D Acfer_0858 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Acfer_0860 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Acfer_0859 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Acfer_0211 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Acfer_2002 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Acfer_0212 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Acfer_2000 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Acfer_0213 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Acfer_1999 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Acfer_2001 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Acfer_0335 extracellular solute-binding protein family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein D Acfer_0336 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Acfer_0337 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D Acfer_0338 spermidine/putrescine ABC transporter ATPase subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Acfer_1699 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Acfer_1701 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Acfer_1700 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Acfer_1885 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Acfer_1883 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Acfer_1882 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Acfer_0649 extracellular solute-binding protein family 3 K10036 glnH; glutamine transport system substrate-binding protein D Acfer_0650 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein D Acfer_0651 ABC transporter related protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D Acfer_0778 extracellular solute-binding protein family 3 K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein D Acfer_0780 polar amino acid ABC transporter, inner membrane subunit K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D Acfer_0779 polar amino acid ABC transporter, inner membrane subunit K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein D Acfer_0777 ABC transporter related protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1] D Acfer_0015 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Acfer_0016 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Acfer_0017 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Acfer_0018 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Acfer_0019 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Acfer_1541 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0694 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0790 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0266 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Acfer_0265 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Acfer_1180 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Acfer_1179 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Acfer_0264 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Acfer_1635 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Acfer_1636 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Acfer_1634 inner-membrane translocator K05832 K05832; putative tryptophan/tyrosine transport system permease protein D Acfer_1633 ABC transporter related protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D Acfer_1457 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Acfer_0648 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Acfer_1787 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Acfer_0320 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein D Acfer_0321 ABC transporter related protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D Acfer_0087 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Acfer_0085 ABC-3 protein K09816 znuB; zinc transport system permease protein D Acfer_0086 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Acfer_1006 cobalt transport protein K02008 cbiQ; cobalt/nickel transport system permease protein D Acfer_1005 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Acfer_1007 ABC transporter related protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Acfer_0056 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_0301 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_0374 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_1594 BioY protein K03523 bioY; biotin transport system substrate-specific component D Acfer_1223 hypothetical protein K16928 mtaT; energy-coupling factor transport system substrate-specific component D Acfer_0350 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Acfer_2045 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Acfer_0348 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_2047 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_0349 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_2046 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Acfer_1675 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Acfer_1676 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Acfer_0275 ABC-2 type transporter K25187 pltK; pyoluteorin transport system permease protein D Acfer_0274 ABC-2 type transporter K25188 pltJ; pyoluteorin transport system permease protein D Acfer_0273 ABC transporter related protein K25189 pltI; pyoluteorin transport system ATP-binding protein D Acfer_0272 secretion protein HlyD family protein K25190 pltH; membrane fusion protein PltH D Acfer_0658 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Acfer_0657 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Acfer_0232 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Acfer_1877 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Acfer_0231 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Acfer_1878 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Acfer_0449 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Acfer_1066 sodium/sulphate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Acfer_1987 Citrate transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Acfer_2028 Citrate transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Acfer_1335 Citrate transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Acfer_0432 sodium/sulphate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Acfer_1721 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Acfer_0677 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_1847 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_0065 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_1426 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_0866 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_0643 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_0798 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_1267 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Acfer_0944 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Acfer_0811 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Acfer_0810 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Acfer_0455 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Acfer_0138 phosphotransferase system EIIC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D Acfer_1033 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D Acfer_1150 MIP family channel protein K06188 aqpZ; aquaporin Z D Acfer_0052 formate/nitrite transporter K21993 fdhC; formate transporter D Acfer_0827 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Acfer_1605 MscS Mechanosensitive ion channel K16052 ynaI; MscS family membrane protein D Acfer_1271 magnesium transporter K06213 mgtE; magnesium transporter D Acfer_1262 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Acfer_0322 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Acfer_1735 Camphor resistance CrcB protein K06199 crcB; fluoride exporter D Acfer_1000 CrcB protein K06199 crcB; fluoride exporter D Acfer_1558 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Acfer_0623 CBS domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D Acfer_0199 hypothetical protein K16079 omp31; outer membrane immunogenic protein D Acfer_1325 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Acfer_0352 TonB-dependent receptor K16092 btuB; vitamin B12 transporter D Acfer_1899 TonB-dependent receptor K16092 btuB; vitamin B12 transporter D Acfer_0385 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Acfer_0271 RND efflux system, outer membrane lipoprotein, NodT family K18308 opmD; outer membrane protein, multidrug efflux system D Acfer_0563 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Acfer_1696 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Acfer_1697 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Acfer_2039 YadA domain protein K21449 ata; trimeric autotransporter adhesin D Acfer_1151 S-layer domain protein K21449 ata; trimeric autotransporter adhesin D Acfer_1872 S-layer domain protein K21449 ata; trimeric autotransporter adhesin D Acfer_0035 S-layer domain protein K21449 ata; trimeric autotransporter adhesin D Acfer_1678 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC D Acfer_0204 LrgA family protein K06518 cidA; holin-like protein D Acfer_0366 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D Acfer_0242 Na+/H+ antiporter NhaC-like protein K07084 yuiF; putative amino acid transporter D Acfer_0448 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Acfer_0072 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Acfer_1625 sodium/proline symporter K11928 putP; sodium/proline symporter D Acfer_1269 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter D Acfer_0047 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Acfer_1205 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Acfer_2009 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Acfer_1452 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Acfer_2030 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Acfer_0222 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Acfer_0083 Na+/H+ antiporter NhaC-like protein K03315 nhaC; Na+:H+ antiporter, NhaC family D Acfer_0440 Na+/H+ antiporter NhaC-like protein K18218 tet35; tetracycline resistance efflux pump D Acfer_1498 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Acfer_0561 cation transporter K03498 trkH; trk/ktr system potassium uptake protein D Acfer_1497 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Acfer_0560 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Acfer_0669 uracil-xanthine permease K02824 uraA; uracil permease D Acfer_0613 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Acfer_1631 Cl-channel voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Acfer_1719 Chromate transporter K07240 chrA; chromate transporter D Acfer_1720 Chromate transporter K07240 chrA; chromate transporter D Acfer_0675 Chromate transporter K07240 chrA; chromate transporter D Acfer_0676 Chromate transporter K07240 chrA; chromate transporter D Acfer_2064 putative transporter K03322 mntH; manganese transport protein D Acfer_2066 putative transporter K03322 mntH; manganese transport protein D Acfer_2005 natural resistance-associated macrophage protein K03322 mntH; manganese transport protein D Acfer_0291 Tripartite ATP-independent periplasmic transporter DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Acfer_1981 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Acfer_1982 Tripartite ATP-independent periplasmic transporter DctQ component K21394 yiaM; TRAP-type transport system small permease protein D Acfer_2014 Tripartite ATP-independent periplasmic transporter DctQ component K21394 yiaM; TRAP-type transport system small permease protein D Acfer_2013 TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Acfer_0293 Extracellular solute-binding protein, family 7 K21395 yiaO; TRAP-type transport system periplasmic protein D Acfer_0490 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter D Acfer_1549 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Acfer_1551 arsenical-resistance protein K03325 ACR3; arsenite transporter D Acfer_0327 arsenical-resistance protein K03325 ACR3; arsenite transporter D Acfer_0169 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B D Acfer_1619 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B D Acfer_1739 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Acfer_0996 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Acfer_1854 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Acfer_0219 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Acfer_0218 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Acfer_1855 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Acfer_0862 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Acfer_1102 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Acfer_2020 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Acfer_0863 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Acfer_2021 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Acfer_1103 conserved hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D Acfer_1101 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Acfer_0864 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D Acfer_1036 membrane protein-like protein K23675 fmnP; riboflavin transporter D Acfer_0663 proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter D Acfer_0118 cell cycle protein K03588 ftsW; cell division protein FtsW D Acfer_0061 protein of unknown function DUF204 K23242 mntP; manganese efflux pump family protein D Acfer_0324 TonB family protein K03832 tonB; periplasmic protein TonB D Acfer_1661 SH3 type 3 domain protein K03646 tolA; colicin import membrane protein D Acfer_1500 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_1834 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Acfer_1362 pyruvate carboxyltransferase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Acfer_1837 carboxyl transferase K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D Acfer_1835 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D Acfer_1836 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Acfer_1817 carboxyl transferase K01615 gcdA; glutaconyl-CoA decarboxylase subunit alpha [EC:7.2.4.5] D Acfer_1010 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Acfer_0246 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Acfer_0565 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Acfer_0564 lipopolysaccharide biosynthesis protein K25590 epsF; protein tyrosine kinase modulator D Acfer_0873 FeoA family protein K04758 feoA; ferrous iron transport protein A D Acfer_1563 FeoA family protein K04758 feoA; ferrous iron transport protein A D Acfer_1564 FeoA family protein K04758 feoA; ferrous iron transport protein A D Acfer_0874 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Acfer_1565 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Acfer_1371 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:afn02044] D Acfer_0511 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Acfer_1294 Type II secretion system F domain protein K02455 gspF; general secretion pathway protein F D Acfer_1293 Tfp pilus assembly protein PilE-like protein K02456 gspG; general secretion pathway protein G D Acfer_1032 peptidase A24A prepilin type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Acfer_1190 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Acfer_1189 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Acfer_1187 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Acfer_1188 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Acfer_1183 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Acfer_1186 Type II secretion system F domain protein K12510 tadB; tight adherence protein B D Acfer_1182 Type II secretion system F domain protein K12511 tadC; tight adherence protein C D Acfer_0509 type II and III secretion system protein K02507 hofQ; protein transport protein HofQ D Acfer_1455 Soluble ligand binding domain protein K02237 comEA; competence protein ComEA D Acfer_0428 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Acfer_1454 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Acfer_1777 filamentous hemagglutinin family outer membrane protein K11016 shlA; hemolysin D Acfer_0653 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Acfer_1522 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Acfer_0258 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Acfer_1521 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Acfer_0971 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Acfer_1909 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Acfer_0466 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Acfer_1505 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Acfer_1524 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Acfer_2079 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Acfer_0532 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Acfer_0533 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:afn02042] D Acfer_1558 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Acfer_0623 CBS domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D Acfer_1777 filamentous hemagglutinin family outer membrane protein K11016 shlA; hemolysin C 02022 Two-component system [BR:afn02022] D Acfer_0125 histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Acfer_0126 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Acfer_0820 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD D Acfer_0937 integral membrane sensor signal transduction histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D Acfer_0832 two component transcriptional regulator, LuxR family K07694 vraR; two-component system, NarL family, vancomycin resistance associated response regulator VraR C 02035 Bacterial motility proteins [BR:afn02035] D Acfer_0429 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D Acfer_1262 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Acfer_1032 peptidase A24A prepilin type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Acfer_1190 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Acfer_1189 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Acfer_1187 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Acfer_1188 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Acfer_1183 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:afn04812] D Acfer_0103 AMMECR1 domain protein K06990 MEMO1; MEMO1 family protein D Acfer_1705 cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins D Acfer_1828 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Acfer_1296 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Acfer_2072 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Acfer_2071 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:afn04147] D Acfer_0933 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Acfer_0930 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Acfer_0931 triosephosphate isomerase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Acfer_0557 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Acfer_1431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Acfer_0704 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Acfer_0593 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Acfer_1275 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Acfer_0256 translation elongation factor Tu K02358 tuf; elongation factor Tu D Acfer_1931 translation elongation factor Tu K02358 tuf; elongation factor Tu D Acfer_0712 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Acfer_1037 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Acfer_0829 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0376 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Acfer_0375 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1478 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Acfer_1908 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Acfer_1856 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Acfer_0599 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Acfer_0598 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Acfer_0403 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Acfer_1586 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Acfer_1880 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Acfer_0068 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_0073 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2029 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_2034 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Acfer_1342 IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Acfer_0986 Electron transfer flavoprotein alpha/beta-subunit K03522 fixB; electron transfer flavoprotein alpha subunit C 02048 Prokaryotic defense system [BR:afn02048] D Acfer_0761 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Acfer_0762 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Acfer_0756 metal dependent phosphohydrolase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Acfer_0760 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Acfer_0758 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1 D Acfer_0759 CRISPR-associated protein, Csd2 family K19118 csd2; CRISPR-associated protein Csd2 D Acfer_0757 CRISPR-associated protein Cas5 family K19119 cas5d; CRISPR-associated protein Cas5d D Acfer_1173 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Acfer_1174 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Acfer_1175 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Acfer_1176 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Acfer_1214 type III restriction protein res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D Acfer_1107 putative type III restriction-modification system, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D Acfer_1215 Site-specific DNA-methyltransferase (adenine-specific) K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Acfer_1108 DNA methylase N-4/N-6 domain protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Acfer_1082 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Acfer_0939 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J D Acfer_2040 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J D Acfer_0667 protein of unknown function UPF0150 K18843 hicB; antitoxin HicB D Acfer_1117 death-on-curing family protein K07341 doc; death on curing protein D Acfer_1116 conserved hypothetical protein K19165 phd; antitoxin Phd D Acfer_0755 plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Acfer_0695 putative plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1 D Acfer_0384 conserved hypothetical protein K19334 tabA; biofilm protein TabA D Acfer_1296 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Acfer_1705 cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins D Acfer_1828 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Acfer_0484 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Acfer_0037 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:afn04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:afn04090] C 01504 Antimicrobial resistance genes [BR:afn01504] D Acfer_0440 Na+/H+ antiporter NhaC-like protein K18218 tet35; tetracycline resistance efflux pump D Acfer_0879 Beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Acfer_1556 Beta-lactamase class A-like protein K17836 penP; beta-lactamase class A [EC:3.5.2.6] D Acfer_0822 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Acfer_0246 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:afn00536] D Acfer_1776 adhesin HecA family K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:afn00537] D Acfer_1880 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:afn03100] D Acfer_R0008 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0031 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0076 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0079 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Acfer_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0009 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Acfer_R0019 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Acfer_R0050 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Acfer_R0039 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Acfer_R0052 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Acfer_R0045 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Acfer_R0042 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Acfer_R0048 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Acfer_R0035 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Acfer_R0072 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Acfer_R0073 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Acfer_R0071 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Acfer_R0020 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Acfer_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Acfer_R0028 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0041 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0047 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0053 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0082 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Acfer_R0034 tRNA-His K14226 tRNA-His; tRNA His D Acfer_R0030 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Acfer_R0077 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Acfer_R0043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Acfer_R0036 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Acfer_R0080 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Acfer_R0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Acfer_R0013 tRNA-Met K14230 tRNA-Met; tRNA Met D Acfer_R0070 tRNA-Met K14230 tRNA-Met; tRNA Met D Acfer_R0015 tRNA-Met K14230 tRNA-Met; tRNA Met D Acfer_R0040 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Acfer_R0046 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Acfer_R0056 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Acfer_R0049 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Acfer_R0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Acfer_R0057 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0069 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0067 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Acfer_R0011 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Acfer_R0014 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Acfer_R0004 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Acfer_R0054 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Acfer_R0012 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Acfer_R0081 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_R0021 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_R0064 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_R0038 tRNA-Val K14237 tRNA-Val; tRNA Val D Acfer_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0063 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0016 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0029 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Acfer_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0062 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0006 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0032 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0075 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Acfer_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0033 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0074 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0061 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Acfer_R0068 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Acfer_R0051 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Acfer_R0055 ssrA; tmRNA as predicted by Rfam (RF00023), score 202.95 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Acfer_0525 2,5-didehydrogluconate reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D Acfer_0976 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K25634 hgdH; 2-oxoglutarate reductase [EC:1.1.1.399] D Acfer_1887 Saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55] D Acfer_1071 alpha/beta hydrolase fold protein K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D Acfer_0645 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Acfer_1430 Redoxin domain protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Acfer_1955 hydrogenase, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3] D Acfer_1201 Desulfoferrodoxin ferrous iron-binding region K05919 dfx; superoxide reductase [EC:1.15.1.2] D Acfer_0026 Ferritin Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2] D Acfer_1328 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Acfer_1550 Protein-tyrosine phosphatase, low molecular weight K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Acfer_1807 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D Acfer_0102 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Acfer_1204 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Acfer_0788 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Acfer_1343 Radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Acfer_1003 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D Acfer_0632 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Acfer_0107 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Acfer_1783 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Acfer_0977 protein of unknown function DUF344 K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33] D Acfer_1131 DNA-directed DNA polymerase K02334 dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7] D Acfer_1093 DNA-directed DNA polymerase K02334 dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7] D Acfer_0601 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D Acfer_0972 alpha/beta hydrolase fold protein K03928 yvaK; carboxylesterase [EC:3.1.1.1] D Acfer_0121 conserved hypothetical protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29] D Acfer_0688 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Acfer_0562 Protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D Acfer_1026 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Acfer_0042 diguanylate cyclase and phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D Acfer_1437 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Acfer_1435 primase/topoisomerase like protein K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D Acfer_1591 beta-lactamase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D Acfer_0878 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Acfer_1991 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D Acfer_0959 formylmethionine deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Acfer_0310 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Acfer_0501 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D Acfer_0214 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Acfer_1628 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Acfer_1815 2-hydroxyglutaryl-CoA dehydratase D-component K20903 hgdA; (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha [EC:4.2.1.167] D Acfer_1814 Benzoyl-CoA reductase K20904 hgdB; (R)-2-hydroxyglutaryl-CoA dehydratase subunit beta [EC:4.2.1.167] D Acfer_1994 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D Acfer_1002 PP-loop domain protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D Acfer_1004 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Acfer_1816 CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D Acfer_0112 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Acfer_0113 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Acfer_0108 Fe-S cluster domain protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Acfer_1600 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Acfer_0876 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Acfer_0772 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D Acfer_1340 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Acfer_0020 CBS domain containing membrane protein K04767 acuB; acetoin utilization protein AcuB C 99982 Energy metabolism D Acfer_1410 4Fe-4S ferredoxin iron-sulfur binding domain protein K05337 fer; ferredoxin D Acfer_0111 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Acfer_0110 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Acfer_0109 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Acfer_0453 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins D Acfer_0395 ATPase associated with various cellular activities AAA_5 K04748 norQ; nitric oxide reductase NorQ protein D Acfer_0869 flavodoxin/nitric oxide synthase K12264 norV; anaerobic nitric oxide reductase flavorubredoxin D Acfer_0250 flavodoxin/nitric oxide synthase K12264 norV; anaerobic nitric oxide reductase flavorubredoxin D Acfer_0269 flavodoxin K03839 fldA; flavodoxin I D Acfer_0985 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism C 99984 Nucleotide metabolism D Acfer_1673 endonuclease K15051 endA; DNA-entry nuclease C 99985 Amino acid metabolism D Acfer_0979 alanine racemase domain protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Acfer_1023 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D Acfer_1646 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Acfer_0028 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Acfer_1863 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Acfer_0805 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Acfer_0346 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Acfer_0347 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism C 99999 Others D Acfer_0329 metallophosphoesterase K22390 ACP7; acid phosphatase type 7 B B 09192 Unclassified: genetic information processing C 99973 Transcription D Acfer_0196 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Acfer_2044 Tex-like protein K06959 tex; protein Tex D Acfer_1421 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A D Acfer_0007 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D Acfer_1599 RNA binding S1 domain protein K07571 K07571; S1 RNA binding domain protein D Acfer_0551 RNA-metabolising metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Acfer_0503 trigger factor K03545 tig; trigger factor D Acfer_0975 SsrA-binding protein K03664 smpB; SsrA-binding protein D Acfer_0477 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Acfer_1164 thioredoxin K07396 K07396; putative protein-disulfide isomerase C 99976 Replication and repair D Acfer_1829 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Acfer_2035 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Acfer_0995 ATP-dependent endonuclease of the OLD family-like protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D Acfer_0476 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Acfer_0195 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease D Acfer_1251 DNA protecting protein DprA K04096 smf; DNA processing protein D Acfer_1630 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Acfer_1951 protein of unknown function DUF927 K06919 K06919; putative DNA primase/helicase D Acfer_1088 phage/plasmid primase, P4 family K06919 K06919; putative DNA primase/helicase D Acfer_1167 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase D Acfer_1166 transposase, IS605 OrfB family K07496 K07496; putative transposase D Acfer_0147 Integrase catalytic region K07497 K07497; putative transposase D Acfer_2018 Integrase catalytic region K07497 K07497; putative transposase D Acfer_0734 conserved hypothetical protein K07497 K07497; putative transposase D Acfer_0740 Integrase catalytic region K07497 K07497; putative transposase D Acfer_1367 Integrase catalytic region K07497 K07497; putative transposase D Acfer_1049 Integrase catalytic region K07497 K07497; putative transposase D Acfer_1664 Integrase catalytic region K07497 K07497; putative transposase D Acfer_1160 Integrase catalytic region K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D Acfer_1727 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Acfer_1070 citrate/H+ symporter, CitMHS family K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D Acfer_0406 Citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D Acfer_0097 Citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D Acfer_0407 Citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D Acfer_1992 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Acfer_1230 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Acfer_1801 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Acfer_1802 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Acfer_0050 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Acfer_0249 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Acfer_0502 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Acfer_1368 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Acfer_0441 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Acfer_0198 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D Acfer_0208 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Acfer_1270 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Acfer_0775 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Acfer_0699 anion transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family D Acfer_0048 YidE/YbjL duplication K07085 K07085; putative transport protein C 99978 Cell growth D Acfer_0684 protein of unknown function DUF542 ScdA domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D Acfer_1725 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D Acfer_2078 single-stranded nucleic acid binding R3H domain protein K06346 jag; spoIIIJ-associated protein D Acfer_1867 urea amidolyase related protein K06350 kipA; antagonist of KipI D Acfer_1868 Allophanate hydrolase subunit 1 K06351 kipI; inhibitor of KinA D Acfer_1153 Resolvase domain protein K06400 spoIVCA; site-specific DNA recombinase D Acfer_0857 Stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D Acfer_1626 Lipoprotein LpqB, GerMN domain protein K06298 gerM; germination protein M C 99993 Cell motility C 99995 Signaling proteins D Acfer_0616 carbon starvation protein CstA K06200 cstA; carbon starvation protein D Acfer_0552 GTP-binding protein TypA K06207 typA; GTP-binding protein D Acfer_1483 ACT domain-containing protein K07166 K07166; ACT domain-containing protein D Acfer_0619 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Acfer_0513 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Acfer_1693 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Acfer_1695 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Acfer_1492 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Acfer_0230 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Acfer_1018 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D Acfer_1881 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein B B 09194 Poorly characterized C 99996 General function prediction only D Acfer_0450 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D Acfer_0451 SufBD protein K09015 sufD; Fe-S cluster assembly protein SufD D Acfer_0223 LemA family protein K03744 lemA; LemA protein D Acfer_1562 protein of unknown function DUF368 K08974 K08974; putative membrane protein C 99997 Function unknown D Acfer_0548 Radical SAM domain protein K06871 K06871; uncharacterized protein D Acfer_0838 protein of unknown function DUF477 K06872 K06872; uncharacterized protein D Acfer_0224 protein of unknown function DUF477 K06872 K06872; uncharacterized protein D Acfer_0942 hydrolase of the alpha/beta superfamily K06889 K06889; uncharacterized protein D Acfer_1738 Hydrolase of the alpha/beta superfamily-like protein K06889 K06889; uncharacterized protein D Acfer_1504 conserved hypothetical protein K06889 K06889; uncharacterized protein D Acfer_0520 alpha/beta family hydrolase K06889 K06889; uncharacterized protein D Acfer_2060 ATPase K06921 K06921; uncharacterized protein D Acfer_0163 protein of unknown function DUF815 K06923 K06923; uncharacterized protein D Acfer_0468 conserved hypothetical protein K06960 K06960; uncharacterized protein D Acfer_0280 GCN5-related N-acetyltransferase K06975 K06975; uncharacterized protein D Acfer_2083 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein K07005 K07005; uncharacterized protein D Acfer_0383 amidohydrolase 2 K07045 K07045; uncharacterized protein D Acfer_1442 nitroreductase K07078 K07078; uncharacterized protein D Acfer_2056 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D Acfer_1021 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D Acfer_0389 permease K07089 K07089; uncharacterized protein D Acfer_0010 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Acfer_1898 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Acfer_0692 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Acfer_1734 metallophosphoesterase K07098 K07098; uncharacterized protein D Acfer_0633 metallophosphoesterase K07099 K07099; uncharacterized protein D Acfer_1788 metallophosphoesterase K07099 K07099; uncharacterized protein D Acfer_1753 Helix-turn-helix type 11 domain protein K07105 K07105; uncharacterized protein D Acfer_1873 Helix-turn-helix type 11 domain protein K07105 K07105; uncharacterized protein D Acfer_0393 Helix-turn-helix type 11 domain protein K07105 K07105; uncharacterized protein D Acfer_0149 membrane protein AbrB duplication K07120 K07120; uncharacterized protein D Acfer_1052 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Acfer_2025 conserved hypothetical protein K07133 K07133; uncharacterized protein D Acfer_2042 putative ATP/GTP-binding protein K07133 K07133; uncharacterized protein D Acfer_1555 fad dependent oxidoreductase, putative K07137 K07137; uncharacterized protein D Acfer_0603 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein D Acfer_1790 4Fe-4S ferredoxin iron-sulfur binding domain protein K07138 K07138; uncharacterized protein D Acfer_0536 uncharacterized Fe-S center protein K07138 K07138; uncharacterized protein D Acfer_2070 protein of unknown function DUF554 K07150 K07150; uncharacterized protein D Acfer_1460 protein of unknown function DUF554 K07150 K07150; uncharacterized protein D Acfer_2080 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Acfer_1181 protein of unknown function DUF192 K09005 K09005; uncharacterized protein D Acfer_0714 Protein of unknown function K09117 K09117; uncharacterized protein D Acfer_0123 protein of unknown function DUF190 K09137 K09137; uncharacterized protein D Acfer_1482 protein of unknown function DUF711 K09157 K09157; uncharacterized protein D Acfer_1106 conserved hypothetical protein K09707 K09707; uncharacterized protein D Acfer_0312 protein of unknown function DUF116 K09729 K09729; uncharacterized protein D Acfer_0465 putative helix-turn-helix protein YlxM/p13 family protein K09787 K09787; uncharacterized protein D Acfer_1487 protein of unknown function DUF541 K09807 K09807; uncharacterized protein D Acfer_1658 protein of unknown function DUF535 K09824 virK; uncharacterized protein D Acfer_0146 S1 RNA-binding domain-containing protein K00243 K00243; uncharacterized protein D Acfer_0646 protein of unknown function DUF328 K09861 K09861; uncharacterized protein D Acfer_0139 protein of unknown function DUF871 K09963 K09963; uncharacterized protein D Acfer_0234 protein of unknown function DUF886 K09975 K09975; uncharacterized protein D Acfer_0904 Uncharacterized conserved protein UCP018688 K01163 K01163; uncharacterized protein D Acfer_0340 protein of unknown function DUF464 K07584 ysxB; uncharacterized protein D Acfer_1358 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 13, 2024