+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Acidithiobacillus ferriphilus

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D K1Y48_11075 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D K1Y48_01465 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C K1Y48_11080 era; GTPase Era K03595 era; GTPase C K1Y48_07715 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C K1Y48_00300 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C K1Y48_08575 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA C K1Y48_07800 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C K1Y48_07860 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D K1Y48_00930 rRNA pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D K1Y48_07055 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D K1Y48_04700 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D K1Y48_02900 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D K1Y48_03615 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D K1Y48_05105 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D K1Y48_07375 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D K1Y48_04420 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D K1Y48_11000 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D K1Y48_02810 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D K1Y48_04170 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D K1Y48_12550 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D K1Y48_07100 rlmJ; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D K1Y48_12140 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D K1Y48_03060 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D K1Y48_09415 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D K1Y48_10435 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D K1Y48_01290 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D K1Y48_02555 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C K1Y48_09220 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C K1Y48_08835 RimK family alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C K1Y48_03185 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C K1Y48_04645 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C K1Y48_07280 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C K1Y48_07085 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] B rRNA processing factors C K1Y48_11075 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C K1Y48_01295 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] C K1Y48_04190 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C K1Y48_06750 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C K1Y48_01850 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C K1Y48_11080 era; GTPase Era K03595 era; GTPase C K1Y48_12105 der; ribosome biogenesis GTPase Der K03977 engA; GTPase C K1Y48_07715 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] C K1Y48_12355 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C K1Y48_01395 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C K1Y48_00655 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C K1Y48_08585 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C K1Y48_08570 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C K1Y48_04165 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein C K1Y48_01810 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C K1Y48_02815 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein C K1Y48_06930 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor C K1Y48_00895 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C K1Y48_12270 YceD family protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024