+D GENES KO
#
KEGG Orthology (KO) - Archaeoglobus fulgidus DSM 4304
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:afu00010]
D AF_1494 predicted coding region AF_1494 K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9]
D AF_0230 conserved hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D AF_1442 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D AF_0108 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D AF_1304 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D AF_1732 glyceraldehyde 3-phosphate dehydrogenase (gap) K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D AF_1146 3-phosphoglycerate kinase (pgk) K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D AF_1425 phosphonopyruvate decarboxylase (bcpC-1) K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AF_1751 phosphonopyruvate decarboxylase (bcpC-2) K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AF_1132 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AF_0710 phosphoenolpyruvate synthase (ppsA) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_0469 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0749 2-oxoacid ferredoxin oxidoreductase, subunit alpha (orA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0468 2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0750 2-oxoacid ferredoxin oxidoreductase, subunit beta (orB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0366 acetyl-CoA synthetase (acs-2) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0975 acetyl-CoA synthetase (acs-4) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_1211 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_1938 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:afu00020]
D AF_1340 citrate synthase (citZ) K01647 CS; citrate synthase [EC:2.3.3.1]
D AF_0647 isocitrate dehydrogenase, NADP (icd) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D AF_0469 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0749 2-oxoacid ferredoxin oxidoreductase, subunit alpha (orA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0468 2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0750 2-oxoacid ferredoxin oxidoreductase, subunit beta (orB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0471 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma (korG) K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D AF_0470 2-ketoglutarate ferredoxin oxidoreductase, subunit delta (korD) K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D AF_2185 succinyl-CoA synthetase, alpha subunit (sucD-2) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AF_1539 succinyl-CoA synthetase, alpha subunit (sucD-1) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AF_2186 succinyl-CoA synthetase, beta subunit (sucC-2) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_1540 succinyl-CoA synthetase, beta subunit (sucC-1) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_0681 succinate dehydrogenase, flavoprotein subunit A (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D AF_0682 succinate dehydrogenase, iron-sulfur subunit B (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D AF_0683 succinate dehydrogenase, subunit C (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D AF_0684 succinate dehydrogenase, subunit D (sdhD) K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D AF_1099 fumarase (fum-2) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D AF_1098 fumarase (fum-1) K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D AF_0855 L-malate dehydrogenase, NAD+-dependent (mdhA) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AF_0220 biotin carboxylase (acc) K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:afu00030]
D AF_1494 predicted coding region AF_1494 K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9]
D AF_0943 ribose 5-phosphate isomerase (rpi) K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D AF_1305 D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hps-2) K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43]
D AF_1796 conserved hypothetical protein K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D AF_0861 D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hps-1) K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27]
D AF_0401 carbohydrate kinase, pfkB family K00852 rbsK; ribokinase [EC:2.7.1.15]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D AF_2037 translation initiation factor eIF-2B, subunit delta (eif2BD) K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29]
D AF_0589 ribose-phosphate pyrophosphokinase (prsA-1) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D AF_1419 ribose-phosphate pyrophosphokinase (prsA-2) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D AF_0023 aldehyde ferredoxin oxidoreductase (aor-1) K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D AF_0077 aldehyde ferredoxin oxidoreductase (aor-2) K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D AF_0340 aldehyde ferredoxin oxidoreductase (aor-3) K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D AF_2281 aldehyde ferredoxin oxidoreductase (aor-4) K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D AF_0230 conserved hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D AF_1442 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D AF_0108 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
C 00040 Pentose and glucuronate interconversions [PATH:afu00040]
D AF_0302 UDP-glucose dehydrogenase (ugd-1) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AF_0596 UDP-glucose dehydrogenase (ugd-2) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AF_1324 carbohydrate kinase, FGGY family K00854 xylB; xylulokinase [EC:2.7.1.17]
D AF_0480 fuculose-1-phosphate aldolase (fucA) K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:afu00051]
D AF_0035 mannosephosphate isomerase, putative K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D AF_1097 mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase (manC) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D AF_0480 fuculose-1-phosphate aldolase (fucA) K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D AF_0230 conserved hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D AF_1442 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D AF_0108 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D AF_1304 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:afu00052]
D AF_0361 UDP-glucose 4-epimerase (galE-1) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism
D AF_0302 UDP-glucose dehydrogenase (ugd-1) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AF_0596 UDP-glucose dehydrogenase (ugd-2) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:afu00500]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D AF_1494 predicted coding region AF_1494 K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:afu00520]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D AF_0302 UDP-glucose dehydrogenase (ugd-1) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AF_0596 UDP-glucose dehydrogenase (ugd-2) K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D AF_0361 UDP-glucose 4-epimerase (galE-1) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D AF_1494 predicted coding region AF_1494 K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9]
D AF_0035 mannosephosphate isomerase, putative K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D AF_1097 mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase (manC) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
C 00620 Pyruvate metabolism [PATH:afu00620]
D AF_0366 acetyl-CoA synthetase (acs-2) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0975 acetyl-CoA synthetase (acs-4) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_0469 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0749 2-oxoacid ferredoxin oxidoreductase, subunit alpha (orA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0468 2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0750 2-oxoacid ferredoxin oxidoreductase, subunit beta (orB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0818 acylphosphatase (acyP) K01512 acyP; acylphosphatase [EC:3.6.1.7]
D AF_1211 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_1938 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_0394 D-lactate dehydrogenase, cytochrome-type (dld) K21836 dld; D-lactate dehydrogenase (acceptor) [EC:1.1.99.6]
D AF_1727 malate oxidoreductase (mae) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D AF_2084 oxaloacetate decarboxylase, sodium ion pump subunit (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D AF_0220 biotin carboxylase (acc) K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D AF_0855 L-malate dehydrogenase, NAD+-dependent (mdhA) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AF_1099 fumarase (fum-2) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D AF_1098 fumarase (fum-1) K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D AF_1486 predicted coding region AF_1486 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AF_0710 phosphoenolpyruvate synthase (ppsA) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0219 2-isopropylmalate synthase (leuA-2) K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:afu00630]
D AF_0366 acetyl-CoA synthetase (acs-2) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0975 acetyl-CoA synthetase (acs-4) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0855 L-malate dehydrogenase, NAD+-dependent (mdhA) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AF_1340 citrate synthase (citZ) K01647 CS; citrate synthase [EC:2.3.3.1]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2218 conserved hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D AF_2219 methylmalonyl-CoA mutase, subunit alpha, C-terminus (mcmA2) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D AF_2215 methylmalonyl-CoA mutase, subunit alpha, N-terminus (mcmA1) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D AF_0444 conserved hypothetical protein K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18]
D AF_1638 ribulose bisphosphate carboxylase, large subunit (rbcL-2) K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AF_0949 glutamine synthetase (glnA) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AF_0852 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00640 Propanoate metabolism [PATH:afu00640]
D AF_0366 acetyl-CoA synthetase (acs-2) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0975 acetyl-CoA synthetase (acs-4) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_1211 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_1938 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2218 conserved hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D AF_2219 methylmalonyl-CoA mutase, subunit alpha, C-terminus (mcmA2) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D AF_2215 methylmalonyl-CoA mutase, subunit alpha, N-terminus (mcmA1) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D AF_2186 succinyl-CoA synthetase, beta subunit (sucC-2) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_1540 succinyl-CoA synthetase, beta subunit (sucC-1) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_2185 succinyl-CoA synthetase, alpha subunit (sucD-2) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AF_1539 succinyl-CoA synthetase, alpha subunit (sucD-1) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:afu00650]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_1190 3-hydroxyacyl-CoA dehydrogenase (hbd-7) K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D AF_0435 enoyl-CoA hydratase (fad-1) K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D AF_2084 oxaloacetate decarboxylase, sodium ion pump subunit (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D AF_2216 methylmalonyl-CoA decarboxylase, biotin carboxyl carrier subunit (mmdC) K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D AF_2085 oxaloacetate decarboxylase, biotin carboxyl carrier subunit, putative K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D AF_1199 glutaconate CoA-transferase, subunit A (gctA) K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12]
D AF_0681 succinate dehydrogenase, flavoprotein subunit A (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D AF_0682 succinate dehydrogenase, iron-sulfur subunit B (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D AF_0683 succinate dehydrogenase, subunit C (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D AF_0684 succinate dehydrogenase, subunit D (sdhD) K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D AF_0333 4-hydroxyphenylacetate-3-hydroxylase (hpaA-1) K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D AF_1027 4-hydroxyphenylacetate-3-hydroxylase (hpaA-3) K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_0469 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0749 2-oxoacid ferredoxin oxidoreductase, subunit alpha (orA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0468 2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0750 2-oxoacid ferredoxin oxidoreductase, subunit beta (orB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_2415 acyl carrier protein synthase (acaA-2) K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D AF_0197 acetyl-CoA synthetase (acs-1) K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D AF_1720 acetolactate synthase, large subunit (ilvB-1) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1780 acetolactate synthase, large subunit (ilvB-2) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_2015 acetolactate synthase, large subunit (ilvB-3) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1719 acetolactate synthase, small subunit (ilvN) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:afu00660]
D AF_1720 acetolactate synthase, large subunit (ilvB-1) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1780 acetolactate synthase, large subunit (ilvB-2) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_2015 acetolactate synthase, large subunit (ilvB-3) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1719 acetolactate synthase, small subunit (ilvN) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D AF_2186 succinyl-CoA synthetase, beta subunit (sucC-2) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_1540 succinyl-CoA synthetase, beta subunit (sucC-1) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_2185 succinyl-CoA synthetase, alpha subunit (sucD-2) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AF_1539 succinyl-CoA synthetase, alpha subunit (sucD-1) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AF_0957 2-isopropylmalate synthase (leuA-1) K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D AF_1963 aconitase (acn) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D AF_2199 3-isopropylmalate dehydratase, large subunit (leuC) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D AF_1761 3-isopropylmalate dehydratase, small subunit (leuD-2) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D AF_0629 3-isopropylmalate dehydratase, small subunit (leuD-1) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D AF_0628 3-isopropylmalate dehydrogenase (leuB) K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:afu00562]
D AF_2372 extragenic suppressor (suhB) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D AF_1794 myo-inositol-1-phosphate synthase (ino1) K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D AF_0263 predicted coding region AF_0263 K23992 K23992; 1L-myo-inositol 1-phosphate cytidylyltransferase / CDP-L-myo-inositol myo-inositolphosphotransferase [EC:2.7.7.74 2.7.8.34]
D AF_1304 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:afu00190]
D AF_0681 succinate dehydrogenase, flavoprotein subunit A (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D AF_0682 succinate dehydrogenase, iron-sulfur subunit B (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D AF_0683 succinate dehydrogenase, subunit C (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D AF_0684 succinate dehydrogenase, subunit D (sdhD) K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D AF_2036 cytochrome C oxidase folding protein (coxD) K02257 COX10; heme o synthase [EC:2.5.1.141]
D AF_0142 cytochrome C oxidase, subunit II, putative K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D AF_0144 cytochrome C oxidase, subunit II (cbaB) K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D AF_0190 cytochrome C oxidase, subunit II, putative K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D AF_2296 cytochrome oxidase,subunit I (cydA-1) K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D AF_2297 cytochrome oxidase, subunit I (cydA-2) K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D AF_1166 H+-transporting ATP synthase, subunit A (atpA) K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D AF_1167 H+-transporting ATP synthase, subunit B (atpB) K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D AF_1164 H+-transporting ATP synthase, subunit C (atpC) K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D AF_1168 H+-transporting ATP synthase, subunit D (atpD) K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D AF_1163 H+-transporting ATP synthase, subunit E (atpE) K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D AF_1165 H+-transporting ATP synthase, subunit F (atpF) K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D AF_1158 ATP synthase, subunit E, putative K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D AF_1159 H+-transporting ATP synthase, subunit I (atpI) K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D AF_1160 H+-transporting ATP synthase, subunit K (atpK-1) K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D AF_1162 H+-transporting ATP synthase, subunit K (atpK-2) K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D AF_0756 exopolyphosphatase (ppx1) K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:afu00710]
D AF_1638 ribulose bisphosphate carboxylase, large subunit (rbcL-2) K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D AF_1146 3-phosphoglycerate kinase (pgk) K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D AF_1732 glyceraldehyde 3-phosphate dehydrogenase (gap) K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D AF_0230 conserved hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D AF_0943 ribose 5-phosphate isomerase (rpi) K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D AF_1304 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D AF_1486 predicted coding region AF_1486 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AF_0855 L-malate dehydrogenase, NAD+-dependent (mdhA) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:afu00720]
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_0710 phosphoenolpyruvate synthase (ppsA) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AF_1486 predicted coding region AF_1486 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AF_0220 biotin carboxylase (acc) K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D AF_0855 L-malate dehydrogenase, NAD+-dependent (mdhA) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AF_1099 fumarase (fum-2) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D AF_1098 fumarase (fum-1) K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D AF_0681 succinate dehydrogenase, flavoprotein subunit A (sdhA) K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D AF_0682 succinate dehydrogenase, iron-sulfur subunit B (sdhB) K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D AF_0683 succinate dehydrogenase, subunit C (sdhC) K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D AF_0684 succinate dehydrogenase, subunit D (sdhD) K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D AF_2185 succinyl-CoA synthetase, alpha subunit (sucD-2) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AF_1539 succinyl-CoA synthetase, alpha subunit (sucD-1) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D AF_2186 succinyl-CoA synthetase, beta subunit (sucC-2) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_1540 succinyl-CoA synthetase, beta subunit (sucC-1) K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D AF_1287 acetyl-CoA synthetase (acs-6) K14466 K14466; 4-hydroxybutyrate---CoA ligase (AMP-forming) [EC:6.2.1.40]
D AF_0333 4-hydroxyphenylacetate-3-hydroxylase (hpaA-1) K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D AF_1027 4-hydroxyphenylacetate-3-hydroxylase (hpaA-3) K14534 abfD; 4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:4.2.1.120 5.3.3.3]
D AF_0285 3-hydroxyacyl-CoA dehydrogenase (hbd-2) K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D AF_2273 3-hydroxyacyl-CoA dehydrogenase (hbd-10) K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D AF_0017 3-hydroxyacyl-CoA dehydrogenase (hbd-1) K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D AF_1122 3-hydroxyacyl-CoA dehydrogenase (hbd-5) K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D AF_1025 3-hydroxyacyl-CoA dehydrogenase (hbd-4) K15016 K15016; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0469 2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0749 2-oxoacid ferredoxin oxidoreductase, subunit alpha (orA) K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D AF_0468 2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0750 2-oxoacid ferredoxin oxidoreductase, subunit beta (orB) K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D AF_0471 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma (korG) K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D AF_0470 2-ketoglutarate ferredoxin oxidoreductase, subunit delta (korD) K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D AF_0647 isocitrate dehydrogenase, NADP (icd) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D AF_2218 conserved hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D AF_2215 methylmalonyl-CoA mutase, subunit alpha, N-terminus (mcmA1) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D AF_2219 methylmalonyl-CoA mutase, subunit alpha, C-terminus (mcmA2) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D AF_1849 carbon monoxide dehydrogenase, catalytic subunit (cooS) K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D AF_0950 carbon monoxide dehydrogenase, iron sulfur subunit (cooF) K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D AF_0376 acetyl-CoA decarbonylase/synthase, subunit gamma (cdhE) K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D AF_0377 acetyl-CoA decarbonylase/synthase, subunit delta (cdhD) K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D AF_0366 acetyl-CoA synthetase (acs-2) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0975 acetyl-CoA synthetase (acs-4) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:afu00680]
D AF_2397 acetyl-CoA decarbonylase/synthase, subunit alpha (cdhA-2) K00192 cdhA; anaerobic carbon-monoxide dehydrogenase, CODH/ACS complex subunit alpha [EC:1.2.7.4]
D AF_1100 acetyl-CoA decarbonylase/synthase, subunit alpha (cdhA-1) K00192 cdhA; anaerobic carbon-monoxide dehydrogenase, CODH/ACS complex subunit alpha [EC:1.2.7.4]
D AF_2398 acetyl-CoA decarbonylase/synthase, subunit epsilon (cdhB-2) K00195 cdhB; anaerobic carbon-monoxide dehydrogenase, CODH/ACS complex subunit epsilon
D AF_1101 acetyl-CoA decarbonylase/synthase, subunit epsilon (cdhB-1) K00195 cdhB; anaerobic carbon-monoxide dehydrogenase, CODH/ACS complex subunit epsilon
D AF_0379 acetyl-CoA decarbonylase/synthase, subunit beta (cdhC) K00193 cdhC; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit beta [EC:2.3.1.169]
D AF_0376 acetyl-CoA decarbonylase/synthase, subunit gamma (cdhE) K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D AF_0377 acetyl-CoA decarbonylase/synthase, subunit delta (cdhD) K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D AF_1849 carbon monoxide dehydrogenase, catalytic subunit (cooS) K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D AF_0950 carbon monoxide dehydrogenase, iron sulfur subunit (cooF) K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D AF_0852 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D AF_1132 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AF_1486 predicted coding region AF_1486 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D AF_0855 L-malate dehydrogenase, NAD+-dependent (mdhA) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AF_0230 conserved hypothetical protein K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D AF_1442 conserved hypothetical protein K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D AF_0108 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D AF_1796 conserved hypothetical protein K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
D AF_1305 D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hps-2) K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43]
D AF_0861 D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hps-1) K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27]
D AF_1930 tungsten formylmethanofuran dehydrogenase, subunit A (fwdA) K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12]
D AF_1929 tungsten formylmethanofuran dehydrogenase, subunit B (fwdB-2) K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12]
D AF_1650 tungsten formylmethanofuran dehydrogenase, subunit B (fwdB-1) K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12]
D AF_1931 tungsten formylmethanofuran dehydrogenase, subunit C (fwdC) K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12]
D AF_1928 tungsten formylmethanofuran dehydrogenase, subunit D (fwdD-2) K00203 fwdD; formylmethanofuran dehydrogenase subunit D [EC:1.2.7.12]
D AF_1651 tungsten formylmethanofuran dehydrogenase, subunit D (fwdD-1) K00203 fwdD; formylmethanofuran dehydrogenase subunit D [EC:1.2.7.12]
D AF_1644 tungsten formylmethanofuran dehydrogenase, subunit F (fwdF) K00205 fwdF; 4Fe-4S ferredoxin
D AF_1649 tungsten formylmethanofuran dehydrogenase, subunit G (fwdG) K11260 fwdG; 4Fe-4S ferredoxin
D AF_2073 formylmethanofuran:tetrahydromethanopterin formyltransferase (ftr-1) K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101]
D AF_2207 formylmethanofuran:tetrahydromethanopterin formyltransferase (ftr-2) K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101]
D AF_1935 N5,N10-methenyltetrahydromethanopterin cyclohydrolase (mch) K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27]
D AF_0714 N5,N10-methylenetetrahydromethanopterin dehydrogenase (mtd) K00319 mtd; methylenetetrahydromethanopterin dehydrogenase [EC:1.5.98.1]
D AF_1066 N5,N10-methylenetetrahydromethanopterin reductase (mer-1) K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2]
D AF_1238 heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D AF_1377 heterodisulfide reductase, subunit A (hdrA-2) K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D AF_1375 heterodisulfide reductase, subunit B (hdrB) K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D AF_0271 heterodisulfide reductase, subunit B, putative K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D AF_1376 heterodisulfide reductase, subunit C (hdrC) K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6]
D AF_0506 iron-sulfur binding reductase K08264 hdrD; heterodisulfide reductase subunit D [EC:1.8.98.1]
D AF_1374 methylviologen-reducing hydrogenase, subunit delta (vhuD) K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6]
D AF_1372 methylviologen-reducing hydrogenase, subunit alpha (vhuA) K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5]
D AF_1373 methylviologen-reducing hydrogenase, subunit gamma (vhuG) K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5]
D AF_0366 acetyl-CoA synthetase (acs-2) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0975 acetyl-CoA synthetase (acs-4) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_0710 phosphoenolpyruvate synthase (ppsA) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D AF_1425 phosphonopyruvate decarboxylase (bcpC-1) K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AF_1751 phosphonopyruvate decarboxylase (bcpC-2) K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AF_0813 phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D AF_2138 phosphoserine phosphatase (serB) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D AF_0798 conserved hypothetical protein K11781 cofH; 5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase [EC:2.5.1.147]
D AF_0797 conserved hypothetical protein K11780 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [EC:4.3.1.32]
D AF_2061 conserved hypothetical protein K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D AF_0917 conserved hypothetical protein K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D AF_2256 conserved hypothetical protein K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
D AF_2004 group II decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D AF_1061 conserved hypothetical protein K06914 mfnD; tyramine---L-glutamate ligase [EC:6.3.4.24]
D AF_2196 conserved hypothetical protein K09733 mfnB; (5-formylfuran-3-yl)methyl phosphate synthase [EC:4.2.3.153]
D AF_0572 conserved hypothetical protein K07144 mfnE; 5-(aminomethyl)-3-furanmethanol phosphate kinase [EC:2.7.4.31]
D AF_0479 conserved hypothetical protein K07072 mfnF; (4-(4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl)furan-2-yl)methanamine synthase [EC:2.5.1.131]
C 00910 Nitrogen metabolism [PATH:afu00910]
D AF_0164 ferredoxin-nitrite reductase (nirA) K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
D AF_0949 glutamine synthetase (glnA) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00920 Sulfur metabolism [PATH:afu00920]
D AF_0640 nitrate ABC transporter, ATP-binding protein, putative K15553 ssuA; sulfonate transport system substrate-binding protein
D AF_0639 nitrate ABC transporter, permease protein (nrtB-2) K15554 ssuC; sulfonate transport system permease protein
D AF_0638 nitrate ABC transporter, ATP-binding protein (nrtC-2) K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D AF_1667 sulfate adenylyltransferase (sat) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D AF_0288 adenylylsulfate 3-phosphotransferase (cysC) K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D AF_1670 adenylylsulfate reductase, subunit A (aprA) K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2]
D AF_1669 adenylylsulfate reductase, subunit B (aprB) K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2]
D AF_0423 sulfite reductase, subunit alpha (dsrA) K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D AF_0424 sulfite reductase, subunit beta (dsrB) K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
D AF_0501 nitrate reductase, gamma subunit, putative K27187 dsrM; [DsrC]-trisulfide reductase subunit M [EC:1.8.5.10]
D AF_0502 heterodisulfide reductase, subunit D, putative K27188 dsrK; [DsrC]-trisulfide reductase subunit K [EC:1.8.5.10]
D AF_0503 predicted coding region AF_0503 K27189 dsrJ; [DsrC]-trisulfide reductase subunit J
D AF_0499 molybdopterin oxidoreductase, iron-sulfur binding subunit K27190 dsrO; [DsrC]-trisulfide reductase subunit O
D AF_0500 molybdopterin oxidoreductase, membrane subunit K27191 dsrP; [DsrC]-trisulfide reductase subunit P
D AF_0557 flavoprotein reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D AF_0176 molybdopterin oxidoreductase, molybdopterin binding subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D AF_0175 molybdopterin oxidoreductase, iron-sulfur binding subunit K00184 dmsB; dimethyl sulfoxide reductase iron-sulfur subunit
D AF_0174 molybdopterin oxidoreductase, membrane subunit K00185 dmsC; dimethyl sulfoxide reductase membrane subunit
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:afu00061]
D AF_1029 long-chain-fatty-acid--CoA ligase (fadD-5) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_1772 long-chain-fatty-acid--CoA ligase (fadD-7) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_0200 long-chain-fatty-acid--CoA ligase (fadD-2) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_2368 long-chain-fatty-acid--CoA ligase (fadD-9) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:afu00071]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_1291 3-ketoacyl-CoA thiolase (acaB-11) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_1028 3-ketoacyl-CoA thiolase (fadA-1) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_2243 3-ketoacyl-CoA thiolase (fadA-3) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_0964 acyl-CoA dehydrogenase (acd-6) K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D AF_0498 acyl-coA dehydrogenase (acd-3) K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D AF_0991 glutaryl-CoA dehydrogenase (gcdH) K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D AF_1029 long-chain-fatty-acid--CoA ligase (fadD-5) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_1772 long-chain-fatty-acid--CoA ligase (fadD-7) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_0200 long-chain-fatty-acid--CoA ligase (fadD-2) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_2368 long-chain-fatty-acid--CoA ligase (fadD-9) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
D AF_0866 glycerol kinase (glpK) K00864 glpK; glycerol kinase [EC:2.7.1.30]
C 00564 Glycerophospholipid metabolism [PATH:afu00564]
D AF_0871 glycerol-3-phosphate dehydrogenase (NAD(P)+) (gpsA) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D AF_1328 glycerol-3-phosphate dehydrogenase (glpA) K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D AF_2045 phosphatidylserine decarboxylase (psd2) K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D AF_1674 sn-glycerol-1-phosphate dehydrogenase (gldA) K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
D AF_0403 conserved hypothetical protein K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41]
D AF_0404 4-hydroxybenzoate octaprenyltransferase, putative K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42]
D AF_1740 conserved hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67]
D AF_2044 CDP-diacylglycerol--serine O-phosphatidyltransferase (pssA) K19665 pssA; archaetidylserine synthase [EC:2.7.8.38]
D AF_0464 bacteriochlorophyll synthase, 43 kDa subunit (chlP-1) K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
C 00565 Ether lipid metabolism
D AF_0868 alkyldihydroxyacetonephosphate synthase K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
C 00600 Sphingolipid metabolism [PATH:afu00600]
D AF_2295 group II decarboxylase K01634 SGPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27]
D AF_1323 group II decarboxylase K01634 SGPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:afu00592]
D AF_1291 3-ketoacyl-CoA thiolase (acaB-11) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_1028 3-ketoacyl-CoA thiolase (fadA-1) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_2243 3-ketoacyl-CoA thiolase (fadA-3) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:afu00230]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D AF_0589 ribose-phosphate pyrophosphokinase (prsA-1) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D AF_1419 ribose-phosphate pyrophosphokinase (prsA-2) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D AF_0873 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D AF_1157 phosphoribosylamine--glycine ligase (purD) K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D AF_1940 phosphoribosylformylglycinamidine synthase II (purL) K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D AF_1941 conserved hypothetical protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D AF_1260 phosphoribosylformylglycinamidine synthase I (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D AF_1693 phosphoribosylformylglycinamidine cyclo-ligase (purM) K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D AF_1271 phosphoribosylaminoimidazole carboxylase (purE) K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D AF_1272 phosphoribosylaminoimidazolesuccinocarboxamide synthase (purC) K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D AF_2242 adenylosuccinate lyase (purB) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D AF_1811 inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D AF_0113 conserved hypothetical protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23]
D AF_0256 conserved hypothetical protein K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23]
D AF_0942 surE stationary-phase survival protein (surE) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D AF_0767 nucleoside diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D AF_0901 conserved hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D AF_2237 HAM1 protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D AF_1320 GMP synthase (guaA-2) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AF_0253 GMP synthase (guaA-1) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AF_1664 ribonucleotide reductase (nrd) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AF_1988 conserved hypothetical protein K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D AF_0841 adenylosuccinate synthetase (purA) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D AF_1341 thymidine phosphorylase (deoA-1) K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D AF_1342 thymidine phosphorylase (deoA-2) K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D AF_0240 adenine deaminase (adeC) K01486 ade; adenine deaminase [EC:3.5.4.2]
D AF_0676 adenylate kinase (adk) K00939 adk; adenylate kinase [EC:2.7.4.3]
D AF_2001 conserved hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3]
D AF_0814 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D AF_2211 HIT family protein (hit) K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D AF_0288 adenylylsulfate 3-phosphotransferase (cysC) K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D AF_1667 sulfate adenylyltransferase (sat) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:afu00240]
D AF_1274 carbamoyl-phosphate synthase, large (or ammonia) subunit (carB) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D AF_1273 carbamoyl-phosphate synthase, small (or glutamine) subunit (carA) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D AF_0106 aspartate carbamoyltransferase, catalytic subunit (pyrB) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D AF_0107 aspartate carbamoyltransferase, regulatory subunit (pyrI) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D AF_2250 dihydroorotase (pyrC) K01465 URA4; dihydroorotase [EC:3.5.2.3]
D AF_0745 dihydroorotase dehydrogenase (pyrD) K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D AF_0528 cytochrome-c3 hydrogenase, subunit gamma K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D AF_1741 orotate phosphoribosyl transferase (pyrE) K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D AF_0929 conserved hypothetical protein K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D AF_2042 uridylate kinase (pyrH) K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D AF_0767 nucleoside diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D AF_0252 CTP synthase (pyrG) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D AF_1900 cytidylate kinase (cmk) K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D AF_0942 surE stationary-phase survival protein (surE) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D AF_1341 thymidine phosphorylase (deoA-1) K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D AF_1342 thymidine phosphorylase (deoA-2) K18931 deoA; AMP phosphorylase [EC:2.4.2.57]
D AF_1664 ribonucleotide reductase (nrd) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AF_1764 dCMP deaminase, putative K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D AF_0061 thymidylate kinase (tmk) K00943 tmk; dTMP kinase [EC:2.7.4.9]
D AF_1308 thymidylate kinase, putative K00943 tmk; dTMP kinase [EC:2.7.4.9]
D AF_1108 deoxycytidine triphosphate deaminase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AF_2047 thymidylate synthase, putative K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:afu00250]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_1439 asparagine synthetase (asnB) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D AF_1665 ornithine cyclodeaminase (arcB) K19244 ala; alanine dehydrogenase [EC:1.4.1.1]
D AF_2252 argininosuccinate synthetase (argG) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D AF_0883 argininosuccinate lyase (argH) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D AF_0841 adenylosuccinate synthetase (purA) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D AF_2242 adenylosuccinate lyase (purB) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D AF_0106 aspartate carbamoyltransferase, catalytic subunit (pyrB) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D AF_0107 aspartate carbamoyltransferase, regulatory subunit (pyrI) K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D AF_0949 glutamine synthetase (glnA) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AF_1274 carbamoyl-phosphate synthase, large (or ammonia) subunit (carB) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D AF_1273 carbamoyl-phosphate synthase, small (or glutamine) subunit (carA) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D AF_1260 phosphoribosylformylglycinamidine synthase I (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D AF_0873 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:afu00260]
D AF_0700 aspartate kinase (lysC) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AF_1506 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AF_0935 homoserine dehydrogenase (hom) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D AF_0551 threonine synthase (thrC-1) K01733 thrC; threonine synthase [EC:4.2.3.1]
D AF_1316 threonine synthase (thrC-2) K01733 thrC; threonine synthase [EC:4.2.3.1]
D AF_0852 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D AF_1425 phosphonopyruvate decarboxylase (bcpC-1) K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AF_1751 phosphonopyruvate decarboxylase (bcpC-2) K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D AF_0813 phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D AF_2138 phosphoserine phosphatase (serB) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D AF_1422 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D AF_1599 tryptophan synthase, subunit alpha (trpA) K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D AF_1600 tryptophan synthase, subunit beta (trpB-2) K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D AF_1240 tryptophan synthase, subunit beta (trpB-1) K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:afu00270]
D AF_2112 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (metE) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D AF_0050 conserved hypothetical protein K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D AF_1610 conserved hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D AF_2334 spermidine synthase (speE) K00797 speE; spermidine synthase [EC:2.5.1.16]
D AF_0550 N-ethylammeline chlorohydrolase (trzA-1) K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D AF_0997 N-ethylammeline chlorohydrolase (trzA-2) K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D AF_1788 methylthioadenosine phosphorylase (mtaP) K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D AF_0370 translation initiation factor eIF-2B, subunit delta (eif2BD) K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D AF_2000 S-adenosylhomocysteinase hydrolase (ahcY-2) K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AF_0886 S-adenosylhomocysteinase hydrolase (ahcY-1) K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AF_0700 aspartate kinase (lysC) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AF_1506 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AF_0935 homoserine dehydrogenase (hom) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D AF_1186 conserved hypothetical protein K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16]
D AF_1185 iron-sulfur cluster binding protein K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin
D AF_0933 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_1422 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D AF_0855 L-malate dehydrogenase, NAD+-dependent (mdhA) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D AF_0813 phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:afu00280]
D AF_0933 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AF_0964 acyl-CoA dehydrogenase (acd-6) K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D AF_0498 acyl-coA dehydrogenase (acd-3) K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D AF_1291 3-ketoacyl-CoA thiolase (acaB-11) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_1028 3-ketoacyl-CoA thiolase (fadA-1) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_2243 3-ketoacyl-CoA thiolase (fadA-3) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_2218 conserved hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D AF_2219 methylmalonyl-CoA mutase, subunit alpha, C-terminus (mcmA2) K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D AF_2215 methylmalonyl-CoA mutase, subunit alpha, N-terminus (mcmA1) K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D AF_0197 acetyl-CoA synthetase (acs-1) K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2415 acyl carrier protein synthase (acaA-2) K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:afu00290]
D AF_0957 2-isopropylmalate synthase (leuA-1) K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D AF_1963 aconitase (acn) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D AF_2199 3-isopropylmalate dehydratase, large subunit (leuC) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D AF_1761 3-isopropylmalate dehydratase, small subunit (leuD-2) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D AF_0629 3-isopropylmalate dehydratase, small subunit (leuD-1) K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D AF_0628 3-isopropylmalate dehydrogenase (leuB) K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D AF_1720 acetolactate synthase, large subunit (ilvB-1) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1780 acetolactate synthase, large subunit (ilvB-2) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_2015 acetolactate synthase, large subunit (ilvB-3) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1719 acetolactate synthase, small subunit (ilvN) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D AF_1985 ketol-acid reductoisomerase (ilvC) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D AF_1014 dihydroxy-acid dehydratase (ilvD) K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D AF_0933 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AF_0219 2-isopropylmalate synthase (leuA-2) K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:afu00300]
D AF_0935 homoserine dehydrogenase (hom) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D AF_0700 aspartate kinase (lysC) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AF_1506 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AF_0910 dihydrodipicolinate synthase (dapA) K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D AF_0909 dihydrodipicolinate reductase (dapB) K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D AF_0080 acetylornithine aminotransferase (argD-1) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D AF_0904 succinyl-diaminopimelate desuccinylase (dapE-2) K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D AF_0051 succinyl-diaminopimelate desuccinylase (dapE-1) K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D AF_0747 diaminopimelate epimerase (dapF) K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D AF_0409 aspartate aminotransferase (aspB-4) K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D AF_0800 diaminopimelate decarboxylase (lysA) K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00310 Lysine degradation [PATH:afu00310]
D AF_0991 glutaryl-CoA dehydrogenase (gcdH) K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_1422 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
C 00220 Arginine biosynthesis [PATH:afu00220]
D AF_1255 ornithine carbamoyltransferase (argF) K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D AF_2252 argininosuccinate synthetase (argG) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D AF_0883 argininosuccinate lyase (argH) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D AF_1260 phosphoribosylformylglycinamidine synthase I (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D AF_0949 glutamine synthetase (glnA) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AF_1274 carbamoyl-phosphate synthase, large (or ammonia) subunit (carB) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D AF_1273 carbamoyl-phosphate synthase, small (or glutamine) subunit (carA) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_1147 glutamate N-acetyltransferase (argJ) K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D AF_1280 acetylglutamate kinase (argB) K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D AF_2071 N-acetyl-gamma-glutamyl-phosphate reductase (argC) K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D AF_0080 acetylornithine aminotransferase (argD-1) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D AF_0522 acetylornithine deacetylase (argE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:afu00330]
D AF_2301 conserved hypothetical protein K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D AF_2431 conserved hypothetical protein K02626 pdaD; arginine decarboxylase [EC:4.1.1.19]
D AF_0646 agmatinase (speB) K01480 speB; agmatinase [EC:3.5.3.11]
D AF_2334 spermidine synthase (speE) K00797 speE; spermidine synthase [EC:2.5.1.16]
D AF_1610 conserved hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:afu00340]
D AF_0590 ATP phosphoribosyltransferase (hisG) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D AF_1950 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (hisIE) K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D AF_0713 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA-1) K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D AF_0986 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA-2) K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D AF_2265 imidazoleglycerol-phosphate synthase, subunit H (hisH) K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D AF_0819 imidazoleglycerol-phosphate synthase, cyclase subunit (hisF) K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D AF_0985 imidazoleglycerol-phosphate dehydrogenase/histidinol-phosphatase (hisB) K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D AF_2002 histidinol-phosphate aminotransferase (hisC-1) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2024 histidinol-phosphate aminotransferase (hisC-2) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_0212 histidinol dehydrogenase (hisD) K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:afu00350]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2002 histidinol-phosphate aminotransferase (hisC-1) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2024 histidinol-phosphate aminotransferase (hisC-2) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2004 group II decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D AF_0885 4-hydroxyphenylacetate-3-hydroxylase (hpaA-2) K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
C 00360 Phenylalanine metabolism [PATH:afu00360]
D AF_1671 coenzyme F390 synthetase (ftsA-2) K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D AF_2013 coenzyme F390 synthetase (ftsA-3) K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D AF_2264 conserved hypothetical protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D AF_1190 3-hydroxyacyl-CoA dehydrogenase (hbd-7) K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2002 histidinol-phosphate aminotransferase (hisC-1) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2024 histidinol-phosphate aminotransferase (hisC-2) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2233 peroxidase / catalase (perA) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:afu00380]
D AF_0991 glutaryl-CoA dehydrogenase (gcdH) K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2233 peroxidase / catalase (perA) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:afu00400]
D AF_0108 conserved hypothetical protein K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10]
D AF_0229 conserved hypothetical protein K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24]
D AF_0228 3-dehydroquinate dehydratase (aroD) K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D AF_2327 shikimate 5-dehydrogenase (aroE) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D AF_0520 conserved hypothetical protein K00891 aroK; shikimate kinase [EC:2.7.1.71]
D AF_1497 5-enolpyruvylshikimate 3-phosphate synthase (aroA) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D AF_0670 chorismate synthase (aroC) K01736 aroC; chorismate synthase [EC:4.2.3.5]
D AF_1603 anthranilate synthase component I (trpE) {Methanococcus jannaschii) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D AF_1602 anthranilate synthase component II (trpG) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D AF_1604 anthranilate synthase component II (trpD) K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D AF_1601 phosphoribosyl anthranilate isomerase (trpF) K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D AF_1599 tryptophan synthase, subunit alpha (trpA) K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D AF_1600 tryptophan synthase, subunit beta (trpB-2) K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D AF_1240 tryptophan synthase, subunit beta (trpB-1) K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D AF_0227 chorismate mutase/prephenate dehydratase (pheA) K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2002 histidinol-phosphate aminotransferase (hisC-1) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2024 histidinol-phosphate aminotransferase (hisC-2) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:afu00410]
D AF_2004 group II decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
D AF_0927 conserved hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
C 00430 Taurine and hypotaurine metabolism
D AF_1665 ornithine cyclodeaminase (arcB) K19244 ala; alanine dehydrogenase [EC:1.4.1.1]
C 00440 Phosphonate and phosphinate metabolism
D AF_0478 ATP-binding protein PhnP (phnP) K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:afu00450]
D AF_2112 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (metE) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D AF_1554 thioredoxin reductase (trxB) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D AF_1667 sulfate adenylyltransferase (sat) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D AF_1453 methionyl-tRNA synthetase (metS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D AF_0852 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:afu00470]
D AF_1422 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D AF_1260 phosphoribosylformylglycinamidine synthase I (purQ) K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D AF_0747 diaminopimelate epimerase (dapF) K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D AF_0800 diaminopimelate decarboxylase (lysA) K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:afu00480]
D AF_0647 isocitrate dehydrogenase, NADP (icd) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D AF_2334 spermidine synthase (speE) K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:afu00730]
D AF_2412 thiamine biosynthesis protein (thiC) K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D AF_2208 hydroxymethylpyrimidine phosphate kinase (thiD) K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D AF_0564 nifS protein, class-V aminotransferase (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_0186 nifS protein, class-V aminotransferase (nifS-1) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_0879 conserved hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D AF_0702 thiamine biosynthetic enzyme (thi1) K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D AF_2075 hydroxyethylthiazole kinase (thiM) K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D AF_2074 thiamine phosphate pyrophosphorylase (thiE) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D AF_0733 thiamine monophosphate kinase (thiL) K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D AF_0814 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D AF_0676 adenylate kinase (adk) K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:afu00740]
D AF_0484 GTP cyclohydrolase II (ribA-1) K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D AF_2007 riboflavin-specific deaminase (ribG) K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302]
D AF_2107 GTP cyclohydrolase II (ribA-2) K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D AF_2128 riboflavin synthase, subunit beta (ribE) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D AF_1416 riboflavin synthase (ribC) K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D AF_2106 conserved hypothetical protein K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161]
D AF_1418 glycerol-3-phosphate cytidyltransferase (taqD) K14656 ribL; FAD synthetase [EC:2.7.7.2]
D AF_2075 hydroxyethylthiazole kinase (thiM) K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D AF_1214 phenylacrylic acid decarboxylase (pad1) K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:afu00750]
D AF_0551 threonine synthase (thrC-1) K01733 thrC; threonine synthase [EC:4.2.3.1]
D AF_1316 threonine synthase (thrC-2) K01733 thrC; threonine synthase [EC:4.2.3.1]
D AF_0508 ethylene-inducible protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D AF_0509 imidazoleglycerol-phosphate synthase, subunit H, putative K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:afu00760]
D AF_1838 conserved hypothetical protein K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D AF_1839 nicotinate-nucleotide pyrophosphorylase (nadC) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D AF_0821 conserved hypothetical protein K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D AF_0942 surE stationary-phase survival protein (surE) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D AF_2315 conserved hypothetical protein K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D AF_1488 conserved hypothetical protein K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1]
D AF_1000 NH(3)-dependent NAD+ synthetase (nadE) K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D AF_1676 transcriptional regulatory protein, Sir2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D AF_0112 transcriptional regulatory protein, Sir2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D AF_2373 conserved hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:afu00770]
D AF_1720 acetolactate synthase, large subunit (ilvB-1) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1780 acetolactate synthase, large subunit (ilvB-2) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_2015 acetolactate synthase, large subunit (ilvB-3) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D AF_1719 acetolactate synthase, small subunit (ilvN) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D AF_1985 ketol-acid reductoisomerase (ilvC) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D AF_1014 dihydroxy-acid dehydratase (ilvD) K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D AF_1695 thiamine biosynthesis protein (apbA) K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D AF_1646 conserved hypothetical protein K06982 pok; pantoate kinase [EC:2.7.1.169]
D AF_0927 conserved hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36]
D AF_1645 pantothenate metabolism flavoprotein (dfp) K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D AF_2206 conserved hypothetical protein K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D AF_1115 conserved hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237]
D AF_0933 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D AF_2004 group II decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11]
C 00780 Biotin metabolism [PATH:afu00780]
D AF_0074 biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:afu00790]
D AF_0484 GTP cyclohydrolase II (ribA-1) K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D AF_0440 conserved hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D AF_0441 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D AF_0442 succinoglycan biosynthesis regulator (exsB) K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AF_1179 conserved hypothetical protein K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39]
D AF_2043 conserved hypothetical protein K09739 mptD; dihydroneopterin aldolase [EC:4.1.2.25]
D AF_0878 conserved hypothetical protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D AF_2089 conserved hypothetical protein K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54]
D AF_0719 conserved hypothetical protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D AF_2383 conserved hypothetical protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D AF_2006 molybdenum cofactor biosynthesis protein (moaA) K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D AF_2150 molybdenum cofactor biosynthesis protein (moaC) K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D AF_2179 molybdopterin converting factor, subunit 2 (moaE) K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D AF_0265 molybdenum cofactor biosynthesis protein (moaB) K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D AF_0931 molybdenum cofactor biosynthesis protein (moeA-1) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D AF_0930 molybdenum cofactor biosynthesis protein (moeA-2) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D AF_2005 molybdopterin-guanine dinucleotide biosynthesis protein A (mobA) K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:afu00670]
D AF_0852 serine hydroxymethyltransferase (glyA) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D AF_1811 inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D AF_2047 thymidylate synthase, putative K00560 thyA; thymidylate synthase [EC:2.1.1.45]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:afu00860]
D AF_0260 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AF_1975 glutamyl-tRNA reductase (hemA) K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D AF_1241 glutamate-1-semialdehyde aminotransferase (hemL) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D AF_1974 porphobilinogen synthase (hemB) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D AF_1242 porphobilinogen deaminase (hemC) K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D AF_0116 uroporphyrinogen III synthase (hemD) K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D AF_1243 uroporphyrin-III C-methyltransferase (cysG-2) K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D AF_0422 uroporphyrin-III C-methyltransferase (cysG-1) K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D AF_1592 conserved hypothetical protein K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D AF_1125 heme biosynthesis protein (nirJ-1) K22226 ahbC; Fe-coproporphyrin III synthase
D AF_2413 coenzyme PQQ synthesis protein (pqqE) K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D AF_2036 cytochrome C oxidase folding protein (coxD) K02257 COX10; heme o synthase [EC:2.5.1.141]
D AF_0721 conserved hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D AF_0727 cobalamin biosynthesis precorrin-2 methyltransferase (cbiL) K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D AF_0724 cobalamin biosynthesis precorrin-3 methylase (cbiH) K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D AF_0726 cobalamin biosynthesis precorrin-3 methylase (cbiF) K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D AF_0725 cobalamin biosynthesis precorrin methylase (cbiG) K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D AF_0723 cobalamin biosynthesis protein (cbiD) K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D AF_0732 cobalamin biosynthesis precorrin-8W decarboxylase (cbiT) K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D AF_0722 cobalamin biosynthesis precorrin-6Y methylase (cbiE) K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D AF_2229 cobyrinic acid a,c-diamide synthase (cbiA) K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D AF_1338 cobyric acid synthase (cbiP) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D AF_1336 cobalamin biosynthesis protein (cbiB) K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D AF_1400 conserved hypothetical protein K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90]
D AF_2321 conserved hypothetical protein K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62]
D AF_0037 cobalamin (5'-phosphate) synthase (cobS-1) K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D AF_2323 cobalamin (5'-phosphate) synthase (cobS-2) K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D AF_1445 conserved hypothetical protein K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:afu00130]
D AF_2176 4-hydroxybenzoate octaprenyltransferase (ubiA) K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D AF_0209 conserved hypothetical protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D AF_1214 phenylacrylic acid decarboxylase (pad1) K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D AF_0389 conserved hypothetical protein K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D AF_0388 conserved hypothetical protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D AF_0390 conserved hypothetical protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D AF_1704 conserved hypothetical protein K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
D AF_0343 tryptophan repressor binding protein (wrbA) K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:afu00900]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2415 acyl carrier protein synthase (acaA-2) K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D AF_1736 3-hydroxy-3-methylglutaryl-coenzyme A reductase (mvaA) K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
D AF_2289 mevalonate kinase (mvk) K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D AF_2288 acetylglutamate kinase, putative K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26]
D AF_2333 conserved hypothetical protein K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182]
D AF_0055 conserved hypothetical protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182]
D AF_1643 conserved hypothetical protein K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126]
D AF_1214 phenylacrylic acid decarboxylase (pad1) K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D AF_2287 carotenoid biosynthetic gene ERWCRTS, putative K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D AF_2286 bifunctional short chain isoprenyl diphosphate synthase (idsA) {Methanobacterium thermoautotrophicum K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D AF_1551 octaprenyl-diphosphate synthase (ispB) K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D AF_0707 conserved hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D AF_1219 conserved hypothetical protein K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:afu00907]
D AF_1291 3-ketoacyl-CoA thiolase (acaB-11) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_1028 3-ketoacyl-CoA thiolase (fadA-1) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_2243 3-ketoacyl-CoA thiolase (fadA-3) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:afu00523]
D AF_0242 glucose-1-phosphate thymidylyltransferase (graD-1) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AF_0325 glucose-1-phosphate thymidylyltransferase (graD-2) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AF_0324 dTDP-glucose 4,6-dehydratase (rfbB) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D AF_0324 dTDP-glucose 4,6-dehydratase (rfbB) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D AF_0487 penicillin G acylase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:afu00261]
D AF_1667 sulfate adenylyltransferase (sat) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D AF_0700 aspartate kinase (lysC) K00928 lysC; aspartate kinase [EC:2.7.2.4]
D AF_1506 aspartate-semialdehyde dehydrogenase (asd) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D AF_0910 dihydrodipicolinate synthase (dapA) K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D AF_0909 dihydrodipicolinate reductase (dapB) K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:afu00521]
D AF_0458 phosphomannomutase (pmm) K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D AF_1794 myo-inositol-1-phosphate synthase (ino1) K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D AF_2372 extragenic suppressor (suhB) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D AF_0242 glucose-1-phosphate thymidylyltransferase (graD-1) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AF_0325 glucose-1-phosphate thymidylyltransferase (graD-2) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AF_0324 dTDP-glucose 4,6-dehydratase (rfbB) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:afu00525]
D AF_0242 glucose-1-phosphate thymidylyltransferase (graD-1) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AF_0325 glucose-1-phosphate thymidylyltransferase (graD-2) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D AF_0324 dTDP-glucose 4,6-dehydratase (rfbB) K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:afu00401]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2002 histidinol-phosphate aminotransferase (hisC-1) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2024 histidinol-phosphate aminotransferase (hisC-2) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D AF_1603 anthranilate synthase component I (trpE) {Methanococcus jannaschii) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D AF_1602 anthranilate synthase component II (trpG) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites [PATH:afu00999]
D AF_0050 conserved hypothetical protein K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D AF_2327 shikimate 5-dehydrogenase (aroE) K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:afu00362]
D AF_1291 3-ketoacyl-CoA thiolase (acaB-11) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_1028 3-ketoacyl-CoA thiolase (fadA-1) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_2243 3-ketoacyl-CoA thiolase (fadA-3) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_0669 4-oxalocrotonate tautomerase, putative K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D AF_2084 oxaloacetate decarboxylase, sodium ion pump subunit (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D AF_2216 methylmalonyl-CoA decarboxylase, biotin carboxyl carrier subunit (mmdC) K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D AF_2085 oxaloacetate decarboxylase, biotin carboxyl carrier subunit, putative K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D AF_0991 glutaryl-CoA dehydrogenase (gcdH) K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D AF_1190 3-hydroxyacyl-CoA dehydrogenase (hbd-7) K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:afu00627]
D AF_0818 acylphosphatase (acyP) K01512 acyP; acylphosphatase [EC:3.6.1.7]
D AF_1214 phenylacrylic acid decarboxylase (pad1) K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D AF_0976 acetyl-CoA synthetase (acs-5) K08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32]
D AF_0007 predicted coding region AF_0007 K25916 mtvB; methoxylated aromatic compound---corrinoid protein Co-methyltransferase [EC:2.1.1.382]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D AF_0669 4-oxalocrotonate tautomerase, putative K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:afu00633]
D AF_1381 F420-nonreducing hydrogenase (vhtG) K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D AF_1849 carbon monoxide dehydrogenase, catalytic subunit (cooS) K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D AF_0950 carbon monoxide dehydrogenase, iron sulfur subunit (cooF) K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D AF_1701 pyruvate ferredoxin oxidoreductase, subunit alpha (porA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_2053 2-ketoisovalerate ferredoxin oxidoreductase, subunit alpha (vorA) K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D AF_1702 pyruvate ferredoxin oxidoreductase, subunit beta (porB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_2052 2-ketoisovalerate ferredoxin oxidoreductase, subunit beta (vorB) K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D AF_1699 pyruvate ferredoxin oxidoreductase, subunit gamma (porG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_2055 2-ketoisovalerate ferredoxin oxidoreductase, subunit gamma (vorG) K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D AF_1700 pyruvate ferredoxin oxidoreductase, subunit delta (porD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_2054 2-ketoisovalerate ferredoxin oxidoreductase, subunit delta (vorD) K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D AF_0423 sulfite reductase, subunit alpha (dsrA) K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22]
D AF_0424 sulfite reductase, subunit beta (dsrB) K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22]
C 00642 Ethylbenzene degradation
D AF_1291 3-ketoacyl-CoA thiolase (acaB-11) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_1028 3-ketoacyl-CoA thiolase (fadA-1) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D AF_2243 3-ketoacyl-CoA thiolase (fadA-3) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
D AF_1199 glutaconate CoA-transferase, subunit A (gctA) K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D AF_0669 4-oxalocrotonate tautomerase, putative K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:afu03020]
D AF_1887 DNA-directed RNA polymerase, subunit B' (rpoB1) K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
D AF_1886 DNA-directed RNA polymerase, subunit B'' (rpoB2) K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]
D AF_1888 DNA-directed RNA polymerase, subunit A' (rpoA1) K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D AF_1889 DNA-directed RNA polymerase, subunit A'' (rpoA2) K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D AF_2282 DNA-directed RNA polymerase, subunit D (rpoD) K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D AF_0207 DNA-directed RNA polymerase, subunit L (rpoL) K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D AF_1117 DNA-directed RNA polymerase, subunit E' (rpoE1) K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D AF_1530 conserved hypothetical protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D AF_1885 DNA-directed RNA polymerase, subunit H (rpoH) K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D AF_1131 DNA-directed RNA polymerase, subunit K (rpoK) K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D AF_1130 DNA-directed RNA polymerase, subunit N (rpoN) K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D AF_0056 predicted coding region AF_0056 K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
C 03022 Basal transcription factors [PATH:afu03022]
D AF_1299 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D AF_0373 transcription initiation factor IID K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D AF_0757 transcription initiation factor IIE, subunit alpha, putative K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:afu03010]
D AF_1133 SSU ribosomal protein S2P (rps2P) K02967 RP-S2; small subunit ribosomal protein S2
D AF_1919 SSU ribosomal protein S3P (rps3P) K02982 RP-S3; small subunit ribosomal protein S3
D AF_2284 SSU ribosomal protein S4P (rps4P) K02986 RP-S4; small subunit ribosomal protein S4
D AF_1905 SSU ribosomal protein S5P (rps5P) K02988 RP-S5; small subunit ribosomal protein S5
D AF_1893 SSU ribosomal protein S7P (rps7P) K02992 RP-S7; small subunit ribosomal protein S7
D AF_1910 SSU ribosomal protein S8P (rps8E) K02994 RP-S8; small subunit ribosomal protein S8
D AF_1129 SSU ribosomal protein S9P (rps9P) K02996 RP-S9; small subunit ribosomal protein S9
D AF_0938 SSU ribosomal protein S10P (rps10P) K02946 RP-S10; small subunit ribosomal protein S10
D AF_2283 SSU ribosomal protein S11P (rps11P) K02948 RP-S11; small subunit ribosomal protein S11
D AF_1892 SSU ribosomal protein S12P (rps12P) K02950 RP-S12; small subunit ribosomal protein S12
D AF_2285 SSU ribosomal protein S13P (rps13P) K02952 RP-S13; small subunit ribosomal protein S13
D AF_1911 SSU ribosomal protein S14P (rps14P) K02954 RP-S14; small subunit ribosomal protein S14
D AF_0801 SSU ribosomal protein S15P (rps15P) K02956 RP-S15; small subunit ribosomal protein S15
D AF_1916 SSU ribosomal protein S17P (rps17P) K02961 RP-S17; small subunit ribosomal protein S17
D AF_1921 SSU ribosomal protein S19P (rps19P) K02965 RP-S19; small subunit ribosomal protein S19
D AF_2320 SSU ribosomal protein S3AE (rps3AE) K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D AF_1913 SSU ribosomal protein S4E (rps4E) K02987 RP-S4e; small subunit ribosomal protein S4e
D AF_0511 SSU ribosomal protein S6E (rps6E) K02991 RP-S6e; small subunit ribosomal protein S6e
D AF_2152 SSU ribosomal protein S8E (rps8E) K02995 RP-S8e; small subunit ribosomal protein S8e
D AF_0911 SSU ribosomal protein S17E (rps17E) K02962 RP-S17e; small subunit ribosomal protein S17e
D AF_2069 SSU ribosomal protein S19E (rps19E) K02966 RP-S19e; small subunit ribosomal protein S19e
D AF_1114 SSU ribosomal protein S24E (rps24E) K02974 RP-S24e; small subunit ribosomal protein S24e
D AF_1334 SSU ribosomal protein S27E (rps27E) K02978 RP-S27e; small subunit ribosomal protein S27e
D AF_1113 SSU ribosomal protein S27AE (rps27AE) K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D AF_0765 SSU ribosomal protein S28E (rps28E) K02979 RP-S28e; small subunit ribosomal protein S28e
D AF_1490 LSU ribosomal protein L1P (rpl1P) K02863 RP-L1; large subunit ribosomal protein L1
D AF_1922 LSU ribosomal protein L2P (rpl2P) K02886 RP-L2; large subunit ribosomal protein L2
D AF_1925 LSU ribosomal protein L3P (rpl3P) K02906 RP-L3; large subunit ribosomal protein L3
D AF_1912 LSU ribosomal protein L5P (rpl5P) K02931 RP-L5; large subunit ribosomal protein L5
D AF_1909 LSU ribosomal protein L6P (rpl6P) K02933 RP-L6; large subunit ribosomal protein L6
D AF_1491 LSU ribosomal protein L10E (rpl10E) K02864 RP-L10; large subunit ribosomal protein L10
D AF_0538 LSU ribosomal protein L11P (rpl11P) K02867 RP-L11; large subunit ribosomal protein L11
D AF_1492 LSU ribosomal protein L12A (rpl12A) K02869 RP-L12; large subunit ribosomal protein L12
D AF_1128 LSU ribosomal protein L13P (rpl13P) K02871 RP-L13; large subunit ribosomal protein L13
D AF_1915 LSU ribosomal protein L14P (rpl14P) K02874 RP-L14; large subunit ribosomal protein L14
D AF_1903 LSU ribosomal protein L15P (rpl15P) K02876 RP-L15; large subunit ribosomal protein L15
D AF_1920 LSU ribosomal protein L22P (rpl22P) K02890 RP-L22; large subunit ribosomal protein L22
D AF_1923 LSU ribosomal protein L23P (rpl23P) K02892 RP-L23; large subunit ribosomal protein L23
D AF_1914 LSU ribosomal protein L24P (rpl24P) K02895 RP-L24; large subunit ribosomal protein L24
D AF_1918 LSU ribosomal protein L29P (rpl29P) K02904 RP-L29; large subunit ribosomal protein L29
D AF_1904 LSU ribosomal protein L30P (rpl30P) K02907 RP-L30; large subunit ribosomal protein L30
D AF_1924 LSU ribosomal protein L4P (rpl4P) K02930 RP-L4e; large subunit ribosomal protein L4e
D AF_0764 LSU ribosomal protein L7AE (rpl7AE) K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D AF_1339 ubiquinol-cytochrome C reductase complex, subunit VI requiring protein K02866 RP-L10e; large subunit ribosomal protein L10e
D AF_2319 LSU ribosomal protein L15E (rpl15E) K02877 RP-L15e; large subunit ribosomal protein L15e
D AF_1127 LSU ribosomal protein L18E (rpl18E) K02883 RP-L18e; large subunit ribosomal protein L18e
D AF_1907 LSU ribosomal protein L19E (rpl19E) K02885 RP-L19e; large subunit ribosomal protein L19e
D AF_1529 LSU ribosomal protein L21E (rpl21E) K02889 RP-L21e; large subunit ribosomal protein L21e
D AF_0766 LSU ribosomal protein L24E (rpl24E) K02896 RP-L24e; large subunit ribosomal protein L24e
D AF_1890 LSU ribosomal protein L30E (rpl30E) K02908 RP-L30e; large subunit ribosomal protein L30e
D AF_2066 LSU ribosomal protein L31E (rpl31E) K02910 RP-L31e; large subunit ribosomal protein L31e
D AF_1908 LSU ribosomal protein L32E (rpl32E) K02912 RP-L32e; large subunit ribosomal protein L32e
D AF_0874 LSU ribosomal protein L37E (rpl37E) K02922 RP-L37e; large subunit ribosomal protein L37e
D AF_0057 LSU ribosomal protein L37AE (rpl37AE) K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D AF_2067 LSU ribosomal protein L39E (rpl39E) K02924 RP-L39e; large subunit ribosomal protein L39e
D AF_1430 LSU ribosomal protein L40E (rpl40E) K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D AF_1333 LSU ribosomal protein L44E (rpl44E) K02929 RP-L44e; large subunit ribosomal protein L44e
D AF_2064 LSU ribosomal protein LXA (rplXA) K02944 RP-LX; large subunit ribosomal protein LX
D AF_r03 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AF_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AF_r01 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:afu00970]
D AF_t39 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AF_t36 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AF_t21 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AF_t09 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t22 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t14 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t19 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t25 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t07 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D AF_t06 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D AF_t28 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D AF_t02 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AF_t13 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AF_t20 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AF_t26 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AF_t38 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AF_t27 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AF_t18 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AF_t16 tRNA-His K14226 tRNA-His; tRNA His
D AF_t01 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D AF_t17 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t08 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t10 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t43 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AF_t34 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AF_t11 tRNA-Met K14230 tRNA-Met; tRNA Met
D AF_t44 tRNA-Met K14230 tRNA-Met; tRNA Met
D AF_t03 tRNA-Met K14230 tRNA-Met; tRNA Met
D AF_t41 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D AF_t42 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AF_t24 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AF_t37 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AF_t04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t15 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t23 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t31 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t33 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AF_t30 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AF_t29 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AF_t46 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D AF_t35 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D AF_t45 tRNA-Val K14237 tRNA-Val; tRNA Val
D AF_t05 tRNA-Val K14237 tRNA-Val; tRNA Val
D AF_t32 tRNA-Val K14237 tRNA-Val; tRNA Val
D AF_0260 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AF_1954 Glu-tRNA amidotransferase, subunit A (gatA-1) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D AF_2329 Glu-tRNA amidotransferase, subunit A (gatA-2) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D AF_2116 Glu-tRNA amidotransferase, subunit B (gatB-2) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D AF_2328 Glu-tRNA amidotransferase, subunit C (gatC) K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D AF_0882 asparaginase (asnA) K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7]
D AF_1440 Glu-tRNA amidotransferase, subunit B (gatB-1) K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7]
D AF_2255 alanyl-tRNA synthetase (alaS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AF_0920 aspartyl-tRNA synthetase (aspS) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D AF_0916 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D AF_0548 threonyl-tRNA synthetase (thrS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AF_2035 seryl-tRNA synthetase (serS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AF_0110 conserved hypothetical protein K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27]
D AF_0028 conserved hypothetical protein K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73]
D AF_0181 conserved hypothetical protein K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73]
D AF_0411 cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AF_1453 methionyl-tRNA synthetase (metS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AF_2224 valyl-tRNA synthetase (valS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AF_2421 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AF_0633 isoleucyl-tRNA synthetase (ileS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AF_1216 lysyl-tRNA synthetase (lysS) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D AF_0894 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AF_1609 prolyl-tRNA synthetase (proS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AF_1642 histidyl-tRNA synthetase (hisS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AF_1955 phenylalanyl-tRNA synthetase, subunit alpha (pheS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AF_1424 phenylalanyl-tRNA synthetase, subunit beta (pheT) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AF_0776 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AF_1694 tryptophanyl-tRNA synthetase (trpS) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:afu03060]
D AF_1902 protein translocase, subunit SEC61 alpha (secY) K03076 secY; preprotein translocase subunit SecY
D AF_0622 signal recognition particle, subunit SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D AF_2062 signal recognition particle receptor (dpa) K03110 ftsY; fused signal recognition particle receptor
D AF_0536 protein translocase, subunit SEC61 gamma (secE) K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D AF_1258 signal recognition particle, subunit SRP19 (srp19) K03105 SRP19; signal recognition particle subunit SRP19
D AF_2056 conserved hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA
D AF_0784 predicted coding region AF_0784 K03117 tatB; sec-independent protein translocase protein TatB
D AF_1344 conserved hypothetical transmembrane protein K03118 tatC; sec-independent protein translocase protein TatC
D AF_1512 conserved hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC
D AF_1655 signal sequence peptidase, putative K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D AF_1791 signal sequence peptidase (sec11) K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D AF_1657 signal sequence peptidase (spc21) K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D AF_2078 predicted coding region AF_2078 K13280 SEC11; signal peptidase I [EC:3.4.21.89]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:afu04122]
D AF_0564 nifS protein, class-V aminotransferase (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_0186 nifS protein, class-V aminotransferase (nifS-1) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_2179 molybdopterin converting factor, subunit 2 (moaE) K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D AF_2006 molybdenum cofactor biosynthesis protein (moaA) K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D AF_2105 predicted coding region AF_2105 K03636 moaD; sulfur-carrier protein
D AF_1624 molybdopterin converting factor, subunit 1 (moaD) K03636 moaD; sulfur-carrier protein
D AF_0552 conserved hypothetical protein K03636 moaD; sulfur-carrier protein
D AF_0531 molybdenum cofactor biosynthesis protein (moeB) K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D AF_0553 thiamine biosynthesis protein (thiF) K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D AF_2150 molybdenum cofactor biosynthesis protein (moaC) K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D AF_0265 molybdenum cofactor biosynthesis protein (moaB) K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D AF_0879 conserved hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D AF_0737 predicted coding region AF_0737 K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:afu03050]
D AF_1976 26S protease regulatory subunit 4 K03420 psmR; proteasome regulatory subunit
D AF_0490 proteasome, subunit alpha (psmA) K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D AF_0481 proteasome, subunit beta (psmB) K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:afu03018]
D AF_0206 predicted coding region AF_0206 K07573 CSL4; exosome complex component CSL4
D AF_0492 conserved hypothetical protein K03679 RRP4; exosome complex component RRP4
D AF_0494 conserved hypothetical protein K12589 RRP42; exosome complex component RRP42
D AF_0493 ribonuclease PH (rph) K11600 RRP41; exosome complex component RRP41
D AF_1132 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AF_2254 ATP-dependent RNA helicase, DEAD-family (deaD) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:afu03030]
D AF_0972 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AF_1899 conserved hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D AF_0621 ribonuclease HII (rnhB) K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D AF_0497 DNA polymerase B1 (polB) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D AF_1790 conserved hypothetical protein K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
D AF_1722 conserved hypothetical protein K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
D AF_0517 cell division control protein 21 (cdc21) K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D AF_0742 DNA primase, putative K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D AF_0336 conserved hypothetical protein K18882 priL; DNA primase large subunit
D AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen
D AF_2060 activator 1, replication factor C, 35 KD subunit K04801 rfcS; replication factor C small subunit
D AF_1195 activator 1, replication factor C, 53 KD subunit K04800 rfcL; replication factor C large subunit
D AF_0264 DNA repair protein RAD2 (rad2) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03410 Base excision repair [PATH:afu03410]
D AF_1692 endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen
D AF_0264 DNA repair protein RAD2 (rad2) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D AF_2117 3-methyladenine DNA glycosylase (alkA) K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D AF_2277 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D AF_0580 exodeoxyribonuclease III (xthA) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D AF_0075 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AF_0735 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
C 03420 Nucleotide excision repair [PATH:afu03420]
D AF_2418 DNA repair protein, putative K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen
D AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03430 Mismatch repair [PATH:afu03430]
D AF_0075 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AF_0735 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AF_0972 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen
D AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
C 03440 Homologous recombination [PATH:afu03440]
D AF_0075 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AF_0735 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AF_0972 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
C 03450 Non-homologous end-joining [PATH:afu03450]
D AF_1726 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku
D AF_1725 DNA ligase, putative K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D AF_0264 DNA repair protein RAD2 (rad2) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
D AF_1116 DNA-directed RNA polymerase, subunit E'' (rpoE2) K15171 SUPT4H1; transcription elongation factor SPT4
D AF_0537 LSU ribosomal protein L24A (rpl24A) K15172 SUPT5H; transcription elongation factor SPT5
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:afu02010]
D AF_0094 conserved hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D AF_0093 sulfate ABC transporter, permease protein (cysT) K15496 wtpB; molybdate/tungstate transport system permease protein
D AF_0092 sulfate ABC transporter, ATP-binding protein (cysA) K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D AF_0640 nitrate ABC transporter, ATP-binding protein, putative K15553 ssuA; sulfonate transport system substrate-binding protein
D AF_0639 nitrate ABC transporter, permease protein (nrtB-2) K15554 ssuC; sulfonate transport system permease protein
D AF_0638 nitrate ABC transporter, ATP-binding protein (nrtC-2) K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D AF_1606 spermidine/putrescine ABC transporter, permease protein (potC) K11070 potC; spermidine/putrescine transport system permease protein
D AF_1607 spermidine/putrescine ABC transporter, permease protein (potB) K11071 potB; spermidine/putrescine transport system permease protein
D AF_1608 spermidine/putrescine ABC transporter, ATP-binding protein (potA) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D AF_0982 osmoprotection protein (proX) K05845 opuC; osmoprotectant transport system substrate-binding protein
D AF_0979 osmoprotection protein (proW-1) K05846 opuBD; osmoprotectant transport system permease protein
D AF_0980 osmoprotection protein (proW-2) K05846 opuBD; osmoprotectant transport system permease protein
D AF_0981 osmoprotection protein (proV) K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D AF_0890 predicted coding region AF_0890 K07335 bmpA; basic membrane protein A and related proteins
D AF_0888 ribose ABC transporter, permease protein (rbsC-1) K23535 nupB; general nucleoside transport system permease protein
D AF_0889 ribose ABC transporter, permease protein (rbsC-2) K23536 nupC; general nucleoside transport system permease protein
D AF_0887 ribose ABC transporter, ATP-binding protein (rbsA-1) K23537 nupA; general nucleoside transport system ATP-binding protein
D AF_1356 phosphate ABC transporter, periplasmic phosphate-binding protein (phoX) K02040 pstS; phosphate transport system substrate-binding protein
D AF_1357 phosphate ABC transporter, permease protein (pstC) K02037 pstC; phosphate transport system permease protein
D AF_1358 phosphate ABC transporter, permease protein (pstA) K02038 pstA; phosphate transport system permease protein
D AF_1359 phosphate ABC transporter, ATP-binding protein (pstB) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D AF_0223 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-1) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0827 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-2) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0962 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-3) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_1391 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-4) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0224 branched-chain amino acid ABC transporter, permease protein (braD-1) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0825 branched-chain amino acid ABC transporter, permease protein (braD-2) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0961 branched-chain amino acid ABC transporter, permease protein (braD-3) K01997 livH; branched-chain amino acid transport system permease protein
D AF_1392 branched-chain amino acid ABC transporter, permease protein (braD-4) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0225 branched-chain amino acid ABC transporter, permease protein (braE-1) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0824 branched-chain amino acid ABC transporter, permease protein (braE-2) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0960 branched-chain amino acid ABC transporter, permease protein (braE-3) K01998 livM; branched-chain amino acid transport system permease protein
D AF_1393 branched-chain amino acid ABC transporter, permease protein (braE-4) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0222 branched-chain amino acid ABC transporter, ATP-binding protein (braF-1) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0823 branched-chain amino acid ABC transporter, ATP-binding protein (braG-2) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0959 branched-chain amino acid ABC transporter, ATP-binding protein (braF-3) {Methanococcus jannasch K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_1390 branched-chain amino acid ABC transporter, ATP-binding protein (braF-4) {Methanococcus jannasch K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0221 branched-chain amino acid ABC transporter, ATP-binding protein (braG-1) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0822 branched-chain amino acid ABC transporter, ATP-binding protein (braF-2) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0958 branched-chain amino acid ABC transporter, ATP-binding protein (braG-3) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_1389 branched-chain amino acid ABC transporter, ATP-binding protein (braG-4) {Methanococcus jannasch K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0729 cobalt transport protein (cbiN) K02009 cbiN; cobalt/nickel transport protein
D AF_1843 cobalamin biosynthesis protein (cbiM-2) K02007 cbiM; cobalt/nickel transport system permease protein
D AF_0728 cobalamin biosynthesis protein (cbiM-1) K02007 cbiM; cobalt/nickel transport system permease protein
D AF_1842 cobalt transport protein (cbiQ-2) K02008 cbiQ; cobalt/nickel transport system permease protein
D AF_0730 cobalt transport protein (cbiQ-1) K02008 cbiQ; cobalt/nickel transport system permease protein
D AF_1841 cobalt transport ATP-binding protein (cbiO-2) K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D AF_0731 cobalt transport ATP-binding protein (cbiO-1) K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D AF_1169 conserved hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D AF_1171 predicted coding region AF_1171 K16785 ecfT; energy-coupling factor transport system permease protein
D AF_1170 ribose ABC transporter, ATP-binding protein (rbsA-2) K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D AF_0042 polysaccharide ABC transporter, permease protein (rfbA-1) K09690 wzm; homopolymeric O-antigen transport system permease protein
D AF_0289 polysaccharide ABC transporter, permease protein (rfbA-2) K09690 wzm; homopolymeric O-antigen transport system permease protein
D AF_0041 polysaccharide ABC transporter, ATP-binding protein (rfbB-1) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D AF_1980 heme exporter protein C (helC) K02195 ccmC; heme exporter protein C
D AF_0983 predicted coding region AF_0983 K02194 ccmB; heme exporter protein B
D AF_0984 ABC transporter, ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:afu03070]
D AF_1902 protein translocase, subunit SEC61 alpha (secY) K03076 secY; preprotein translocase subunit SecY
D AF_2062 signal recognition particle receptor (dpa) K03110 ftsY; fused signal recognition particle receptor
D AF_0622 signal recognition particle, subunit SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D AF_2056 conserved hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA
D AF_0784 predicted coding region AF_0784 K03117 tatB; sec-independent protein translocase protein TatB
D AF_1344 conserved hypothetical transmembrane protein K03118 tatC; sec-independent protein translocase protein TatC
D AF_1512 conserved hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:afu02020]
D AF_1356 phosphate ABC transporter, periplasmic phosphate-binding protein (phoX) K02040 pstS; phosphate transport system substrate-binding protein
D AF_1835 conserved hypothetical protein K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D AF_1727 malate oxidoreductase (mae) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D AF_0978 nitrogen regulatory protein P-II (glnB-1) K04751 glnB; nitrogen regulatory protein P-II 1
D AF_1747 nitrogen regulatory protein P-II (glnB-2) K04751 glnB; nitrogen regulatory protein P-II 1
D AF_1750 nitrogen regulatory protein P-II (glnB-3) K04751 glnB; nitrogen regulatory protein P-II 1
D AF_0949 glutamine synthetase (glnA) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AF_1538 conserved hypothetical protein K02106 atoE; short-chain fatty acids transporter
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_1381 F420-nonreducing hydrogenase (vhtG) K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D AF_1037 chemotaxis protein methyltransferase (cheR) K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D AF_1034 methyl-accepting chemotaxis protein (tlpC-1) K03406 mcp; methyl-accepting chemotaxis protein
D AF_1045 methyl-accepting chemotaxis protein (tlpC-2) K03406 mcp; methyl-accepting chemotaxis protein
D AF_1044 purine-binding chemotaxis protein (cheW) K03408 cheW; purine-binding chemotaxis protein CheW
D AF_1040 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D AF_1042 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D AF_1041 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D AF_2296 cytochrome oxidase,subunit I (cydA-1) K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D AF_2297 cytochrome oxidase, subunit I (cydA-2) K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:afu02024]
D AF_1603 anthranilate synthase component I (trpE) {Methanococcus jannaschii) K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D AF_1602 anthranilate synthase component II (trpG) K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D AF_0223 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-1) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0827 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-2) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0962 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-3) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_1391 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-4) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0224 branched-chain amino acid ABC transporter, permease protein (braD-1) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0825 branched-chain amino acid ABC transporter, permease protein (braD-2) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0961 branched-chain amino acid ABC transporter, permease protein (braD-3) K01997 livH; branched-chain amino acid transport system permease protein
D AF_1392 branched-chain amino acid ABC transporter, permease protein (braD-4) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0225 branched-chain amino acid ABC transporter, permease protein (braE-1) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0824 branched-chain amino acid ABC transporter, permease protein (braE-2) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0960 branched-chain amino acid ABC transporter, permease protein (braE-3) K01998 livM; branched-chain amino acid transport system permease protein
D AF_1393 branched-chain amino acid ABC transporter, permease protein (braE-4) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0222 branched-chain amino acid ABC transporter, ATP-binding protein (braF-1) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0823 branched-chain amino acid ABC transporter, ATP-binding protein (braG-2) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0959 branched-chain amino acid ABC transporter, ATP-binding protein (braF-3) {Methanococcus jannasch K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_1390 branched-chain amino acid ABC transporter, ATP-binding protein (braF-4) {Methanococcus jannasch K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0221 branched-chain amino acid ABC transporter, ATP-binding protein (braG-1) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0822 branched-chain amino acid ABC transporter, ATP-binding protein (braF-2) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0958 branched-chain amino acid ABC transporter, ATP-binding protein (braG-3) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_1389 branched-chain amino acid ABC transporter, ATP-binding protein (braG-4) {Methanococcus jannasch K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_1029 long-chain-fatty-acid--CoA ligase (fadD-5) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_1772 long-chain-fatty-acid--CoA ligase (fadD-7) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_0200 long-chain-fatty-acid--CoA ligase (fadD-2) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_2368 long-chain-fatty-acid--CoA ligase (fadD-9) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_1767 dipeptide ABC transporter, dipeptide-binding protein (dppA) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D AF_1768 dipeptide ABC transporter, permease protein (dppB) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D AF_1769 dipeptide ABC transporter, permease protein (dppC) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D AF_1770 dipeptide ABC transporter, ATP-binding protein (dppD) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D AF_1902 protein translocase, subunit SEC61 alpha (secY) K03076 secY; preprotein translocase subunit SecY
D AF_2062 signal recognition particle receptor (dpa) K03110 ftsY; fused signal recognition particle receptor
D AF_0622 signal recognition particle, subunit SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:afu02030]
D AF_1034 methyl-accepting chemotaxis protein (tlpC-1) K03406 mcp; methyl-accepting chemotaxis protein
D AF_1045 methyl-accepting chemotaxis protein (tlpC-2) K03406 mcp; methyl-accepting chemotaxis protein
D AF_1040 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D AF_1044 purine-binding chemotaxis protein (cheW) K03408 cheW; purine-binding chemotaxis protein CheW
D AF_1042 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D AF_1039 conserved hypothetical protein K03410 cheC; chemotaxis protein CheC
D AF_1041 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D AF_1038 conserved hypothetical protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D AF_1037 chemotaxis protein methyltransferase (cheR) K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
C 02040 Flagellar assembly
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D AF_1132 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D AF_1289 conserved hypothetical protein K07588 MMAA; GTPase [EC:3.6.5.-]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
C 01502 Vancomycin resistance
C 01503 Cationic antimicrobial peptide (CAMP) resistance
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:afu01000]
C 01001 Protein kinases [BR:afu01001]
D AF_0665 O-sialoglycoprotein endopeptidase, putative K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D AF_1804 conserved hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D AF_2426 conserved hypothetical protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
D AF_1040 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:afu01009]
D AF_2326 translation initiation factor eIF-2, subunit beta, putative K03238 EIF2S2; translation initiation factor 2 subunit 2
D AF_2000 S-adenosylhomocysteinase hydrolase (ahcY-2) K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AF_0886 S-adenosylhomocysteinase hydrolase (ahcY-1) K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AF_2138 phosphoserine phosphatase (serB) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:afu01002]
D AF_0936 conserved hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D AF_1320 GMP synthase (guaA-2) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AF_0253 GMP synthase (guaA-1) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D AF_0873 amidophosphoribosyltransferase (purF) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D AF_1439 asparagine synthetase (asnB) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D AF_1281 intracellular protease (pfpI) K26818 pfpI; archaeal arginyl aminopeptidase [EC:3.4.11.27]
D AF_2046 cytochrome oxidase, subunit I, putative K24447 artA; archaeosortase A [EC:3.4.22.-]
D AF_0904 succinyl-diaminopimelate desuccinylase (dapE-2) K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D AF_0051 succinyl-diaminopimelate desuccinylase (dapE-1) K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D AF_1840 methionyl aminopeptidase (map) K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D AF_2034 X-pro aminopeptidase (pepQ) K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D AF_0235 heat shock protein (htpX) K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D AF_0330 conserved hypothetical protein K06974 amzA; archaemetzincin [EC:3.4.-.-]
D AF_0364 ATP-dependent protease La (lon) K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D AF_1655 signal sequence peptidase, putative K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D AF_1791 signal sequence peptidase (sec11) K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D AF_1657 signal sequence peptidase (spc21) K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D AF_2078 predicted coding region AF_2078 K13280 SEC11; signal peptidase I [EC:3.4.21.89]
D AF_0487 penicillin G acylase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D AF_1454 predicted coding region AF_1454 K07059 K07059; rhomboid family protein
D AF_1011 conserved hypothetical protein K07059 K07059; rhomboid family protein
D AF_0490 proteasome, subunit alpha (psmA) K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D AF_0481 proteasome, subunit beta (psmB) K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D AF_0656 antibiotic maturation protein (pmbA) K03592 pmbA; PmbA protein
D AF_0655 conserved hypothetical protein K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:afu01003]
D AF_0387 glycosyltransferase, putative K23684 aglJ; dolichol-phosphate hexosyltransferase [EC:2.4.1.-]
D AF_0581 dolichol-P-glucose synthetase, putative K23683 aglD; glycosyltransferase AglD [EC:2.4.1.-]
D AF_0329 transmembrane oligosaccharyl transferase, putative K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18]
D AF_0040 predicted coding region AF_0040 K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21]
D AF_0380 transmembrane oligosaccharyl transferase, putative K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:afu01005]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:afu01011]
D AF_2046 cytochrome oxidase, subunit I, putative K24447 artA; archaeosortase A [EC:3.4.22.-]
C 01004 Lipid biosynthesis proteins [BR:afu01004]
D AF_0366 acetyl-CoA synthetase (acs-2) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0975 acetyl-CoA synthetase (acs-4) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D AF_0197 acetyl-CoA synthetase (acs-1) K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D AF_1211 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_1938 conserved hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D AF_1029 long-chain-fatty-acid--CoA ligase (fadD-5) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_1772 long-chain-fatty-acid--CoA ligase (fadD-7) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_0200 long-chain-fatty-acid--CoA ligase (fadD-2) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_2368 long-chain-fatty-acid--CoA ligase (fadD-9) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:afu01006]
D AF_2286 bifunctional short chain isoprenyl diphosphate synthase (idsA) {Methanobacterium thermoautotrophicum K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D AF_1551 octaprenyl-diphosphate synthase (ispB) K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D AF_0707 conserved hypothetical protein K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D AF_2176 4-hydroxybenzoate octaprenyltransferase (ubiA) K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D AF_2036 cytochrome C oxidase folding protein (coxD) K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:afu01007]
D AF_1216 lysyl-tRNA synthetase (lysS) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D AF_0260 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AF_0776 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AF_1694 tryptophanyl-tRNA synthetase (trpS) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AF_0411 cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AF_0894 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AF_1453 methionyl-tRNA synthetase (metS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AF_0633 isoleucyl-tRNA synthetase (ileS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AF_2224 valyl-tRNA synthetase (valS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AF_2421 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AF_0920 aspartyl-tRNA synthetase (aspS) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D AF_1642 histidyl-tRNA synthetase (hisS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AF_0916 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D AF_2035 seryl-tRNA synthetase (serS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AF_1609 prolyl-tRNA synthetase (proS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AF_0548 threonyl-tRNA synthetase (thrS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AF_2255 alanyl-tRNA synthetase (alaS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AF_0110 conserved hypothetical protein K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27]
D AF_1955 phenylalanyl-tRNA synthetase, subunit alpha (pheS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AF_1424 phenylalanyl-tRNA synthetase, subunit beta (pheT) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AF_2129 aspartate aminotransferase (aspB-2) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_2366 aspartate aminotransferase (aspB-1) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D AF_0409 aspartate aminotransferase (aspB-4) K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D AF_1623 aspartate aminotransferase (aspB-3) K10907 K10907; aminotransferase [EC:2.6.1.-]
D AF_2002 histidinol-phosphate aminotransferase (hisC-1) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_2024 histidinol-phosphate aminotransferase (hisC-2) K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D AF_0080 acetylornithine aminotransferase (argD-1) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D AF_1241 glutamate-1-semialdehyde aminotransferase (hemL) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D AF_0933 branched-chain amino acid aminotransferase (ilvE) K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:afu03000]
D AF_0373 transcription initiation factor IID K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D AF_1723 transcriptional regulatory protein, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D AF_1148 transcriptional regulatory protein, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D AF_0584 transcriptional regulatory protein, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D AF_1298 predicted coding region AF_1298 K07721 K07721; ArsR family transcriptional regulator
D AF_1785 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D AF_0245 iron-dependent repressor (desR) K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D AF_1984 iron-dependent repressor (troR) K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D AF_2395 iron-dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D AF_0074 biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA) K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AF_2227 conserved hypothetical protein K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI
D AF_0213 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D AF_1009 predicted coding region AF_1009 K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D AF_1232 conserved hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D AF_0386 orotate phosphoribosyl transferase, putative K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism
D AF_1022 molybdenum-pterin-binding protein (mopB) K02019 modE; molybdate transport system regulatory protein
D AF_1869 predicted coding region AF_1869 K07725 csa3; CRISPR-associated protein Csa3
D AF_1787 conserved hypothetical protein K07728 K07728; putative transcriptional regulator
D AF_1627 repressor protein K07729 K07729; putative transcriptional regulator
D AF_1793 repressor protein K07729 K07729; putative transcriptional regulator
D AF_0998 conserved hypothetical protein K07730 K07730; putative transcriptional regulator
D AF_2414 conserved hypothetical protein K07731 K07731; putative transcriptional regulator
D AF_0743 conserved hypothetical protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C 03021 Transcription machinery [BR:afu03021]
D AF_1299 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D AF_0373 transcription initiation factor IID K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
D AF_0757 transcription initiation factor IIE, subunit alpha, putative K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D AF_1116 DNA-directed RNA polymerase, subunit E'' (rpoE2) K15171 SUPT4H1; transcription elongation factor SPT4
D AF_0537 LSU ribosomal protein L24A (rpl24A) K15172 SUPT5H; transcription elongation factor SPT5
D AF_2209 conserved hypothetical protein K24104 GPN; GPN-loop GTPase
D AF_0539 conserved hypothetical protein K24104 GPN; GPN-loop GTPase
D AF_1891 transcription termination-antitermination factor NusA, putative K02600 nusA; transcription termination/antitermination protein NusA
D AF_1888 DNA-directed RNA polymerase, subunit A' (rpoA1) K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6]
D AF_1889 DNA-directed RNA polymerase, subunit A'' (rpoA2) K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6]
D AF_1887 DNA-directed RNA polymerase, subunit B' (rpoB1) K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6]
D AF_1886 DNA-directed RNA polymerase, subunit B'' (rpoB2) K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6]
D AF_2282 DNA-directed RNA polymerase, subunit D (rpoD) K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6]
D AF_1117 DNA-directed RNA polymerase, subunit E' (rpoE1) K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6]
D AF_1530 conserved hypothetical protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6]
D AF_1885 DNA-directed RNA polymerase, subunit H (rpoH) K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6]
D AF_1131 DNA-directed RNA polymerase, subunit K (rpoK) K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6]
D AF_0207 DNA-directed RNA polymerase, subunit L (rpoL) K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
D AF_1130 DNA-directed RNA polymerase, subunit N (rpoN) K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6]
D AF_0056 predicted coding region AF_0056 K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
D AF_1235 transcription-associated protein TFIIS K03057 tfs; transcription factor S
C 03019 Messenger RNA biogenesis [BR:afu03019]
D AF_1116 DNA-directed RNA polymerase, subunit E'' (rpoE2) K15171 SUPT4H1; transcription elongation factor SPT4
D AF_0537 LSU ribosomal protein L24A (rpl24A) K15172 SUPT5H; transcription elongation factor SPT5
D AF_1297 cell division control protein 48, AAA family (cdc48-1) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_2098 cell division control protein 48, AAA family (cdc48-2) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_0837 cell division protein pelota (pelA) K06965 PELO; protein pelota
D AF_1220 peptide chain release factor eRF, subunit 1 K03265 ETF1; peptide chain release factor subunit 1
D AF_0937 translation elongation factor EF-1, subunit alpha (tuf) K03231 EEF1A; elongation factor 1-alpha
D AF_0744 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha
D AF_0206 predicted coding region AF_0206 K07573 CSL4; exosome complex component CSL4
D AF_0492 conserved hypothetical protein K03679 RRP4; exosome complex component RRP4
D AF_0493 ribonuclease PH (rph) K11600 RRP41; exosome complex component RRP41
D AF_0494 conserved hypothetical protein K12589 RRP42; exosome complex component RRP42
D AF_2254 ATP-dependent RNA helicase, DEAD-family (deaD) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D AF_1132 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 03041 Spliceosome [BR:afu03041]
D AF_0783 conserved hypothetical protein K06874 ZPR1; zinc finger protein ZPR1
C 03011 Ribosome [BR:afu03011]
D AF_2320 SSU ribosomal protein S3AE (rps3AE) K02984 RP-S3Ae; small subunit ribosomal protein S3Ae
D AF_1913 SSU ribosomal protein S4E (rps4E) K02987 RP-S4e; small subunit ribosomal protein S4e
D AF_0511 SSU ribosomal protein S6E (rps6E) K02991 RP-S6e; small subunit ribosomal protein S6e
D AF_2152 SSU ribosomal protein S8E (rps8E) K02995 RP-S8e; small subunit ribosomal protein S8e
D AF_0911 SSU ribosomal protein S17E (rps17E) K02962 RP-S17e; small subunit ribosomal protein S17e
D AF_2069 SSU ribosomal protein S19E (rps19E) K02966 RP-S19e; small subunit ribosomal protein S19e
D AF_1114 SSU ribosomal protein S24E (rps24E) K02974 RP-S24e; small subunit ribosomal protein S24e
D AF_1334 SSU ribosomal protein S27E (rps27E) K02978 RP-S27e; small subunit ribosomal protein S27e
D AF_1113 SSU ribosomal protein S27AE (rps27AE) K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D AF_0765 SSU ribosomal protein S28E (rps28E) K02979 RP-S28e; small subunit ribosomal protein S28e
D AF_1924 LSU ribosomal protein L4P (rpl4P) K02930 RP-L4e; large subunit ribosomal protein L4e
D AF_0764 LSU ribosomal protein L7AE (rpl7AE) K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D AF_1339 ubiquinol-cytochrome C reductase complex, subunit VI requiring protein K02866 RP-L10e; large subunit ribosomal protein L10e
D AF_2319 LSU ribosomal protein L15E (rpl15E) K02877 RP-L15e; large subunit ribosomal protein L15e
D AF_1127 LSU ribosomal protein L18E (rpl18E) K02883 RP-L18e; large subunit ribosomal protein L18e
D AF_1907 LSU ribosomal protein L19E (rpl19E) K02885 RP-L19e; large subunit ribosomal protein L19e
D AF_1529 LSU ribosomal protein L21E (rpl21E) K02889 RP-L21e; large subunit ribosomal protein L21e
D AF_0766 LSU ribosomal protein L24E (rpl24E) K02896 RP-L24e; large subunit ribosomal protein L24e
D AF_1890 LSU ribosomal protein L30E (rpl30E) K02908 RP-L30e; large subunit ribosomal protein L30e
D AF_2066 LSU ribosomal protein L31E (rpl31E) K02910 RP-L31e; large subunit ribosomal protein L31e
D AF_1908 LSU ribosomal protein L32E (rpl32E) K02912 RP-L32e; large subunit ribosomal protein L32e
D AF_0874 LSU ribosomal protein L37E (rpl37E) K02922 RP-L37e; large subunit ribosomal protein L37e
D AF_0057 LSU ribosomal protein L37AE (rpl37AE) K02921 RP-L37Ae; large subunit ribosomal protein L37Ae
D AF_2067 LSU ribosomal protein L39E (rpl39E) K02924 RP-L39e; large subunit ribosomal protein L39e
D AF_1430 LSU ribosomal protein L40E (rpl40E) K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D AF_1333 LSU ribosomal protein L44E (rpl44E) K02929 RP-L44e; large subunit ribosomal protein L44e
D AF_1133 SSU ribosomal protein S2P (rps2P) K02967 RP-S2; small subunit ribosomal protein S2
D AF_1919 SSU ribosomal protein S3P (rps3P) K02982 RP-S3; small subunit ribosomal protein S3
D AF_2284 SSU ribosomal protein S4P (rps4P) K02986 RP-S4; small subunit ribosomal protein S4
D AF_1905 SSU ribosomal protein S5P (rps5P) K02988 RP-S5; small subunit ribosomal protein S5
D AF_1893 SSU ribosomal protein S7P (rps7P) K02992 RP-S7; small subunit ribosomal protein S7
D AF_1910 SSU ribosomal protein S8P (rps8E) K02994 RP-S8; small subunit ribosomal protein S8
D AF_1129 SSU ribosomal protein S9P (rps9P) K02996 RP-S9; small subunit ribosomal protein S9
D AF_0938 SSU ribosomal protein S10P (rps10P) K02946 RP-S10; small subunit ribosomal protein S10
D AF_2283 SSU ribosomal protein S11P (rps11P) K02948 RP-S11; small subunit ribosomal protein S11
D AF_1892 SSU ribosomal protein S12P (rps12P) K02950 RP-S12; small subunit ribosomal protein S12
D AF_2285 SSU ribosomal protein S13P (rps13P) K02952 RP-S13; small subunit ribosomal protein S13
D AF_1911 SSU ribosomal protein S14P (rps14P) K02954 RP-S14; small subunit ribosomal protein S14
D AF_0801 SSU ribosomal protein S15P (rps15P) K02956 RP-S15; small subunit ribosomal protein S15
D AF_1916 SSU ribosomal protein S17P (rps17P) K02961 RP-S17; small subunit ribosomal protein S17
D AF_1921 SSU ribosomal protein S19P (rps19P) K02965 RP-S19; small subunit ribosomal protein S19
D AF_1490 LSU ribosomal protein L1P (rpl1P) K02863 RP-L1; large subunit ribosomal protein L1
D AF_1922 LSU ribosomal protein L2P (rpl2P) K02886 RP-L2; large subunit ribosomal protein L2
D AF_1925 LSU ribosomal protein L3P (rpl3P) K02906 RP-L3; large subunit ribosomal protein L3
D AF_1912 LSU ribosomal protein L5P (rpl5P) K02931 RP-L5; large subunit ribosomal protein L5
D AF_1909 LSU ribosomal protein L6P (rpl6P) K02933 RP-L6; large subunit ribosomal protein L6
D AF_1491 LSU ribosomal protein L10E (rpl10E) K02864 RP-L10; large subunit ribosomal protein L10
D AF_0538 LSU ribosomal protein L11P (rpl11P) K02867 RP-L11; large subunit ribosomal protein L11
D AF_1128 LSU ribosomal protein L13P (rpl13P) K02871 RP-L13; large subunit ribosomal protein L13
D AF_1915 LSU ribosomal protein L14P (rpl14P) K02874 RP-L14; large subunit ribosomal protein L14
D AF_1903 LSU ribosomal protein L15P (rpl15P) K02876 RP-L15; large subunit ribosomal protein L15
D AF_1920 LSU ribosomal protein L22P (rpl22P) K02890 RP-L22; large subunit ribosomal protein L22
D AF_1923 LSU ribosomal protein L23P (rpl23P) K02892 RP-L23; large subunit ribosomal protein L23
D AF_1914 LSU ribosomal protein L24P (rpl24P) K02895 RP-L24; large subunit ribosomal protein L24
D AF_1918 LSU ribosomal protein L29P (rpl29P) K02904 RP-L29; large subunit ribosomal protein L29
D AF_1904 LSU ribosomal protein L30P (rpl30P) K02907 RP-L30; large subunit ribosomal protein L30
D AF_1492 LSU ribosomal protein L12A (rpl12A) K02869 RP-L12; large subunit ribosomal protein L12
D AF_2064 LSU ribosomal protein LXA (rplXA) K02944 RP-LX; large subunit ribosomal protein LX
D AF_r01 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D AF_r03 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AF_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:afu03009]
D AF_2088 conserved hypothetical protein K14564 NOP56; nucleolar protein 56
D AF_0526 conserved hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D AF_1106 conserved hypothetical protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D AF_0734 conserved hypothetical protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D AF_1805 conserved hypothetical protein K06961 KRR1; ribosomal RNA assembly protein
D AF_1804 conserved hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D AF_2426 conserved hypothetical protein K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
D AF_2001 conserved hypothetical protein K18532 AK6; adenylate kinase [EC:2.7.4.3]
D AF_0004 RNase L inhibitor K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
D AF_0428 GTP-binding protein, GTP1/OBG-family K06943 NOG1; nucleolar GTP-binding protein
D AF_1917 conserved hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D AF_0489 conserved hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D AF_2317 conserved hypothetical protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D AF_2049 conserved hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
D AF_2065 conserved hypothetical protein K03264 EIF6; translation initiation factor 6
D AF_1972 conserved hypothetical protein K07562 NMD3; 60S ribosomal export protein NMD3
D AF_0491 conserved hypothetical protein K14574 SDO1; ribosome maturation protein SDO1
D AF_1297 cell division control protein 48, AAA family (cdc48-1) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_2098 cell division control protein 48, AAA family (cdc48-2) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_0058 conserved hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D AF_1181 GTP-binding protein K03595 era; GTPase
D AF_2087 fibrillarin (fib) K04795 flpA; fibrillarin-like pre-rRNA processing protein
D AF_0764 LSU ribosomal protein L7AE (rpl7AE) K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D AF_1891 transcription termination-antitermination factor NusA, putative K02600 nusA; transcription termination/antitermination protein NusA
D AF_1783 dimethyladenosine transferase (ksgA) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AF_2324 fmu and fmv protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AF_2399 rRNA methylase, putative K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AF_2051 cell division protein (ftsJ) K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D AF_0739 ribosomal protein S18 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D AF_2254 ATP-dependent RNA helicase, DEAD-family (deaD) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D AF_0781 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AF_2070 conserved hypothetical protein K07574 yhbY; RNA-binding protein
D AF_1364 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:afu03016]
D AF_1917 conserved hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D AF_0489 conserved hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D AF_2317 conserved hypothetical protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D AF_0109 conserved hypothetical protein K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
D AF_0939 conserved hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D AF_0410 signal-transducing histidine kinase, putative K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D AF_0862 conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D AF_1495 conserved hypothetical protein K24956 ZBTB8OS; protein archease
D AF_0937 translation elongation factor EF-1, subunit alpha (tuf) K03231 EEF1A; elongation factor 1-alpha
D AF_0744 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha
D AF_0260 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AF_1609 prolyl-tRNA synthetase (proS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AF_0633 isoleucyl-tRNA synthetase (ileS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AF_2421 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AF_1453 methionyl-tRNA synthetase (metS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AF_0894 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AF_2255 alanyl-tRNA synthetase (alaS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AF_0916 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D AF_0548 threonyl-tRNA synthetase (thrS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AF_2035 seryl-tRNA synthetase (serS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AF_0411 cysteinyl-tRNA synthetase (cysS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AF_2224 valyl-tRNA synthetase (valS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AF_1642 histidyl-tRNA synthetase (hisS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AF_1955 phenylalanyl-tRNA synthetase, subunit alpha (pheS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AF_1424 phenylalanyl-tRNA synthetase, subunit beta (pheT) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AF_0776 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AF_1694 tryptophanyl-tRNA synthetase (trpS) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AF_0625 conserved hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D AF_1247 conserved hypothetical protein K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
D AF_0815 N2,N2-dimethylguanosine tRNA methyltransferase (trm1) K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D AF_0704 conserved hypothetical protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D AF_0216 L-isoaspartyl protein carboxyl methyltransferase PimT, putative K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D AF_2261 conserved hypothetical protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D AF_1973 conserved hypothetical protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D AF_2059 conserved hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D AF_1730 pseudouridylate synthase I (truA) # K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AF_0238 centromere/microtubule-binding protein (cbf5) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D AF_1677 conserved hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D AF_1152 conserved hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D AF_0564 nifS protein, class-V aminotransferase (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_0186 nifS protein, class-V aminotransferase (nifS-1) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_0665 O-sialoglycoprotein endopeptidase, putative K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D AF_1112 O-sialoglycoprotein endopeptidase (gcp) K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D AF_2402 conserved hypothetical protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D AF_0781 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AF_2226 conserved hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
D AF_1936 conserved hypothetical protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5]
D AF_2156 tRNA nucleotidyltransferase (cca) K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
D AF_0900 tRNA intron endonuclease (endA) K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
D AF_2157 conserved hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D AF_1553 conserved hypothetical protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D AF_0406 conserved hypothetical protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
D AF_1216 lysyl-tRNA synthetase (lysS) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D AF_0920 aspartyl-tRNA synthetase (aspS) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D AF_0110 conserved hypothetical protein K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27]
D AF_0028 conserved hypothetical protein K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73]
D AF_0181 conserved hypothetical protein K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73]
D AF_1056 conserved hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D AF_2039 proliferating-cell nucleolar antigen P120, putative K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D AF_0031 predicted coding region AF_0031 K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D AF_2178 conserved hypothetical protein K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D AF_1257 conserved hypothetical protein K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D AF_0751 conserved hypothetical protein K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D AF_0853 proliferating-cell nucleolar antigen P120, putative K22446 K22446; tRNA (cytosine49-C5)-methyltransferase [EC:2.1.1.-]
D AF_1321 conserved hypothetical protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D AF_0519 predicted coding region AF_0519 K09119 cgi121; KEOPS complex subunit Cgi121
D AF_0442 succinoglycan biosynthesis regulator (exsB) K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AF_0440 conserved hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D AF_0441 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D AF_1485 queuine tRNA-ribosyltransferase (tgtB) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D AF_0588 archaeosine tRNA-ribosyltransferase (tgtA) K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D AF_0879 conserved hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D AF_2259 conserved hypothetical protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D AF_1522 conserved hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
C 03012 Translation factors [BR:afu03012]
D AF_0777 translation initiation factor eIF-1A (eif1A) K03236 EIF1A; translation initiation factor 1A
D AF_0914 conserved hypothetical protein K03113 EIF1; translation initiation factor 1
D AF_0527 translation initiation factor eIF-2, subunit alpha (eif2A) K03237 EIF2S1; translation initiation factor 2 subunit 1
D AF_2326 translation initiation factor eIF-2, subunit beta, putative K03238 EIF2S2; translation initiation factor 2 subunit 2
D AF_0592 translation initiation factor eIF-2, subunit gamma (eif2G) K03242 EIF2S3; translation initiation factor 2 subunit 3
D AF_0645 translation initiation factor eIF-5A (eif5A) K03263 EIF5A; translation initiation factor 5A
D AF_0768 translation initiation factor IF-2 (infB) K03243 EIF5B; translation initiation factor 5B
D AF_2065 conserved hypothetical protein K03264 EIF6; translation initiation factor 6
D AF_0937 translation elongation factor EF-1, subunit alpha (tuf) K03231 EEF1A; elongation factor 1-alpha
D AF_0744 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha
D AF_0574 translation elongation factor EF-1, subunit beta K03232 EEF1B; elongation factor 1-beta
D AF_1894 translation elongation factor EF-2 (fus) K03234 EEF2; elongation factor 2
D AF_1803 conserved hypothetical protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108]
D AF_1666 conserved hypothetical protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14]
D AF_1220 peptide chain release factor eRF, subunit 1 K03265 ETF1; peptide chain release factor subunit 1
D AF_1784 protoporphyrinogen oxidase (hemK) K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D AF_2095 conserved hypothetical protein K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29]
C 03110 Chaperones and folding catalysts [BR:afu03110]
D AF_1451 thermosome, subunit beta (thsB) K22447 cct; archaeal chaperonin
D AF_2238 thermosome, subunit alpha (thsA) K22447 cct; archaeal chaperonin
D AF_1971 small heat shock protein (hsp20-2) K13993 HSP20; HSP20 family protein
D AF_1296 small heat shock protein (hsp20-1) K13993 HSP20; HSP20 family protein
D AF_2063 c-myc binding protein, putative K04797 pfdA; prefoldin alpha subunit
D AF_1150 erpK protein, putative K04798 pfdB; prefoldin beta subunit
D AF_1367 hydrogenase expression/formation protein (hypA) K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D AF_1368 hydrogenase expression/formation protein (hypB) K04652 hypB; hydrogenase nickel incorporation protein HypB
D AF_1989 peptidyl-prolyl cis-trans isomerase (slyD) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D AF_1284 thioredoxin (trx-3) K03671 TXN; thioredoxin
D AF_2144 thioredoxin (trx-4) K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:afu04131]
D AF_0767 nucleoside diphosphate kinase (ndk) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D AF_1297 cell division control protein 48, AAA family (cdc48-1) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_2098 cell division control protein 48, AAA family (cdc48-2) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_0536 protein translocase, subunit SEC61 gamma (secE) K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D AF_0937 translation elongation factor EF-1, subunit alpha (tuf) K03231 EEF1A; elongation factor 1-alpha
D AF_0744 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha
C 04121 Ubiquitin system [BR:afu04121]
D AF_1430 LSU ribosomal protein L40E (rpl40E) K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e
D AF_1113 SSU ribosomal protein S27AE (rps27AE) K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
C 03051 Proteasome [BR:afu03051]
D AF_0490 proteasome, subunit alpha (psmA) K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D AF_0481 proteasome, subunit beta (psmB) K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D AF_1976 26S protease regulatory subunit 4 K03420 psmR; proteasome regulatory subunit
C 03032 DNA replication proteins [BR:afu03032]
D AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen
D AF_0264 DNA repair protein RAD2 (rad2) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D AF_0526 conserved hypothetical protein K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D AF_2418 DNA repair protein, putative K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D AF_1899 conserved hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101]
D AF_0244 cell division control protein 6, putative K10725 cdc6A; archaeal cell division control protein 6
D AF_0695 conserved hypothetical protein K10725 cdc6A; archaeal cell division control protein 6
D AF_0517 cell division control protein 21 (cdc21) K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3]
D AF_0742 DNA primase, putative K02683 priS; DNA primase small subunit [EC:2.7.7.102]
D AF_0336 conserved hypothetical protein K18882 priL; DNA primase large subunit
D AF_1332 predicted coding region AF_1332 K09723 ginS; DNA replication factor GINS
D AF_0972 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AF_0621 ribonuclease HII (rnhB) K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D AF_0497 DNA polymerase B1 (polB) K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7]
D AF_1722 conserved hypothetical protein K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7]
D AF_1790 conserved hypothetical protein K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7]
D AF_1195 activator 1, replication factor C, 53 KD subunit K04800 rfcL; replication factor C large subunit
D AF_2060 activator 1, replication factor C, 35 KD subunit K04801 rfcS; replication factor C small subunit
D AF_0465 DNA gyrase, subunit A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D AF_0530 DNA gyrase, subunit B (gyrB) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D AF_0940 DNA topoisomerase VI, subunit A (top6A) K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2]
D AF_0652 DNA topoisomerase VI, subunit B (top6B) K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2]
D AF_1806 DNA topoisomerase I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D AF_1024 reverse gyrase (top-RG) K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-]
C 03036 Chromosome and associated proteins [BR:afu03036]
D AF_1926 conserved hypothetical protein K09142 SPOUT1; methyltransferase [EC:2.1.1.-]
D AF_0337 archaeal histone A1 (hpyA1-1) K24450 hmf; DNA-binding protein
D AF_1493 archaeal histone A1 (hpyA1-2) K24450 hmf; DNA-binding protein
D AF_1558 chromosome segregation protein (smc1) K03529 smc; chromosome segregation protein
D AF_1559 conserved hypothetical protein K05896 scpA; segregation and condensation protein A
D AF_1580 conserved hypothetical protein K06024 scpB; segregation and condensation protein B
D AF_0535 cell division protein (ftsZ-1) K03531 ftsZ; cell division protein FtsZ
D AF_0570 cell division protein (ftsZ-2) K03531 ftsZ; cell division protein FtsZ
D AF_0696 cell division inhibitor (minD-1) K03609 minD; septum site-determining protein MinD
D AF_1937 cell division inhibitor (minD-2) K03609 minD; septum site-determining protein MinD
D AF_2021 rod shape-determining protein (mreB) K03569 mreB; rod shape-determining protein MreB and related proteins
D AF_0082 predicted coding region AF_0082 K04763 xerD; integrase/recombinase XerD
C 03400 DNA repair and recombination proteins [BR:afu03400]
D AF_2314 methylated-DNA-protein-cysteine methyltransferase (ogt) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AF_1692 endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen
D AF_0264 DNA repair protein RAD2 (rad2) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D AF_2418 DNA repair protein, putative K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D AF_1234 mutator protein MutT (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AF_1108 deoxycytidine triphosphate deaminase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AF_2277 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D AF_2117 3-methyladenine DNA glycosylase (alkA) K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D AF_0580 exodeoxyribonuclease III (xthA) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D AF_0129 conserved hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D AF_0075 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AF_0735 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AF_0972 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D AF_1032 purine NTPase, putative K03546 sbcC; DNA repair protein SbcC/Rad50
D AF_1031 DNA repair protein RAD32 (rad32) K03547 sbcD; DNA repair protein SbcD/Mre11
D AF_2435 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D AF_1878 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D AF_0993 DNA repair protein RAD51 (radA) K04483 radA; DNA repair protein RadA
D AF_2096 DNA repair protein REC K04484 radB; DNA repair protein RadB
D AF_1965 conserved hypothetical protein K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
D AF_1030 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D AF_1033 conserved hypothetical protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-]
D AF_1726 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku
D AF_1725 DNA ligase, putative K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D AF_0465 DNA gyrase, subunit A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D AF_0530 DNA gyrase, subunit B (gyrB) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D AF_1806 DNA topoisomerase I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D AF_1149 large helicase-related protein (lhr-1) K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D AF_1664 ribonucleotide reductase (nrd) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AF_1590 predicted coding region AF_1590 K22585 nreA; DNA repair protein NreA
C 03029 Mitochondrial biogenesis [BR:afu03029]
D AF_1917 conserved hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D AF_0489 conserved hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D AF_2317 conserved hypothetical protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D AF_1181 GTP-binding protein K03595 era; GTPase
D AF_0776 tyrosyl-tRNA synthetase (tyrS) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AF_2421 leucyl-tRNA synthetase (leuS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AF_0916 glycyl-tRNA synthetase (glyS) K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D AF_0894 arginyl-tRNA synthetase (argS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AF_1954 Glu-tRNA amidotransferase, subunit A (gatA-1) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D AF_2329 Glu-tRNA amidotransferase, subunit A (gatA-2) K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D AF_2116 Glu-tRNA amidotransferase, subunit B (gatB-2) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D AF_2328 Glu-tRNA amidotransferase, subunit C (gatC) K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D AF_0564 nifS protein, class-V aminotransferase (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_0186 nifS protein, class-V aminotransferase (nifS-1) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_2036 cytochrome C oxidase folding protein (coxD) K02257 COX10; heme o synthase [EC:2.5.1.141]
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:afu02000]
D AF_0094 conserved hypothetical protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein
D AF_0093 sulfate ABC transporter, permease protein (cysT) K15496 wtpB; molybdate/tungstate transport system permease protein
D AF_0092 sulfate ABC transporter, ATP-binding protein (cysA) K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6]
D AF_0640 nitrate ABC transporter, ATP-binding protein, putative K15553 ssuA; sulfonate transport system substrate-binding protein
D AF_0639 nitrate ABC transporter, permease protein (nrtB-2) K15554 ssuC; sulfonate transport system permease protein
D AF_0638 nitrate ABC transporter, ATP-binding protein (nrtC-2) K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D AF_1606 spermidine/putrescine ABC transporter, permease protein (potC) K11070 potC; spermidine/putrescine transport system permease protein
D AF_1607 spermidine/putrescine ABC transporter, permease protein (potB) K11071 potB; spermidine/putrescine transport system permease protein
D AF_1608 spermidine/putrescine ABC transporter, ATP-binding protein (potA) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D AF_0982 osmoprotection protein (proX) K05845 opuC; osmoprotectant transport system substrate-binding protein
D AF_0979 osmoprotection protein (proW-1) K05846 opuBD; osmoprotectant transport system permease protein
D AF_0980 osmoprotection protein (proW-2) K05846 opuBD; osmoprotectant transport system permease protein
D AF_0981 osmoprotection protein (proV) K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D AF_0088 thiamine biosynthesis protein, putative K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D AF_0086 nitrate ABC transporter, permease protein (nrtB-1) K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D AF_0087 nitrate ABC transporter, ATP-binding protein (nrtC-1) K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D AF_0890 predicted coding region AF_0890 K07335 bmpA; basic membrane protein A and related proteins
D AF_0888 ribose ABC transporter, permease protein (rbsC-1) K23535 nupB; general nucleoside transport system permease protein
D AF_0889 ribose ABC transporter, permease protein (rbsC-2) K23536 nupC; general nucleoside transport system permease protein
D AF_0887 ribose ABC transporter, ATP-binding protein (rbsA-1) K23537 nupA; general nucleoside transport system ATP-binding protein
D AF_1356 phosphate ABC transporter, periplasmic phosphate-binding protein (phoX) K02040 pstS; phosphate transport system substrate-binding protein
D AF_1357 phosphate ABC transporter, permease protein (pstC) K02037 pstC; phosphate transport system permease protein
D AF_1358 phosphate ABC transporter, permease protein (pstA) K02038 pstA; phosphate transport system permease protein
D AF_1359 phosphate ABC transporter, ATP-binding protein (pstB) K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D AF_0223 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-1) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0827 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-2) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0962 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-3) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_1391 branched-chain amino acid ABC transporter, periplasmic binding protein (braC-4) K01999 livK; branched-chain amino acid transport system substrate-binding protein
D AF_0224 branched-chain amino acid ABC transporter, permease protein (braD-1) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0825 branched-chain amino acid ABC transporter, permease protein (braD-2) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0961 branched-chain amino acid ABC transporter, permease protein (braD-3) K01997 livH; branched-chain amino acid transport system permease protein
D AF_1392 branched-chain amino acid ABC transporter, permease protein (braD-4) K01997 livH; branched-chain amino acid transport system permease protein
D AF_0225 branched-chain amino acid ABC transporter, permease protein (braE-1) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0824 branched-chain amino acid ABC transporter, permease protein (braE-2) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0960 branched-chain amino acid ABC transporter, permease protein (braE-3) K01998 livM; branched-chain amino acid transport system permease protein
D AF_1393 branched-chain amino acid ABC transporter, permease protein (braE-4) K01998 livM; branched-chain amino acid transport system permease protein
D AF_0222 branched-chain amino acid ABC transporter, ATP-binding protein (braF-1) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0823 branched-chain amino acid ABC transporter, ATP-binding protein (braG-2) K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0959 branched-chain amino acid ABC transporter, ATP-binding protein (braF-3) {Methanococcus jannasch K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_1390 branched-chain amino acid ABC transporter, ATP-binding protein (braF-4) {Methanococcus jannasch K01995 livG; branched-chain amino acid transport system ATP-binding protein
D AF_0221 branched-chain amino acid ABC transporter, ATP-binding protein (braG-1) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0822 branched-chain amino acid ABC transporter, ATP-binding protein (braF-2) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0958 branched-chain amino acid ABC transporter, ATP-binding protein (braG-3) K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_1389 branched-chain amino acid ABC transporter, ATP-binding protein (braG-4) {Methanococcus jannasch K01996 livF; branched-chain amino acid transport system ATP-binding protein
D AF_0231 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D AF_0232 glutamine ABC transporter, permease protein (glnP) K02029 ABC.PA.P; polar amino acid transport system permease protein
D AF_0680 glutamine ABC transporter, ATP-binding protein (glnQ) K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D AF_1767 dipeptide ABC transporter, dipeptide-binding protein (dppA) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D AF_1768 dipeptide ABC transporter, permease protein (dppB) K02033 ABC.PE.P; peptide/nickel transport system permease protein
D AF_1769 dipeptide ABC transporter, permease protein (dppC) K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D AF_1770 dipeptide ABC transporter, ATP-binding protein (dppD) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D AF_0432 iron (III) ABC transporter, ATP-binding protein (hemV-2) K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D AF_0431 iron (III) ABC transporter, permease protein (hemU-1) K02015 ABC.FEV.P; iron complex transport system permease protein
D AF_0430 iron (III) ABC transporter, ATP-binding protein (hemV-1) K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D AF_1402 iron (III) ABC transporter, permease protein (hemU-2) K25027 btuC; cobalamin transport system permease protein
D AF_1401 iron (III) ABC transporter, ATP-binding protein (hemV-3) K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D AF_0729 cobalt transport protein (cbiN) K02009 cbiN; cobalt/nickel transport protein
D AF_1842 cobalt transport protein (cbiQ-2) K02008 cbiQ; cobalt/nickel transport system permease protein
D AF_0730 cobalt transport protein (cbiQ-1) K02008 cbiQ; cobalt/nickel transport system permease protein
D AF_1843 cobalamin biosynthesis protein (cbiM-2) K02007 cbiM; cobalt/nickel transport system permease protein
D AF_0728 cobalamin biosynthesis protein (cbiM-1) K02007 cbiM; cobalt/nickel transport system permease protein
D AF_1841 cobalt transport ATP-binding protein (cbiO-2) K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D AF_0731 cobalt transport ATP-binding protein (cbiO-1) K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D AF_1169 conserved hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D AF_1171 predicted coding region AF_1171 K16785 ecfT; energy-coupling factor transport system permease protein
D AF_1170 ribose ABC transporter, ATP-binding protein (rbsA-2) K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D AF_1983 ABC transporter, periplasmic binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D AF_1981 ABC transporter, permease protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D AF_1982 ABC transporter, ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D AF_0042 polysaccharide ABC transporter, permease protein (rfbA-1) K09690 wzm; homopolymeric O-antigen transport system permease protein
D AF_0289 polysaccharide ABC transporter, permease protein (rfbA-2) K09690 wzm; homopolymeric O-antigen transport system permease protein
D AF_0041 polysaccharide ABC transporter, ATP-binding protein (rfbB-1) K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D AF_1980 heme exporter protein C (helC) K02195 ccmC; heme exporter protein C
D AF_0983 predicted coding region AF_0983 K02194 ccmB; heme exporter protein B
D AF_0984 ABC transporter, ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D AF_1137 predicted coding region AF_1137 K01992 ABC-2.P; ABC-2 type transport system permease protein
D AF_1302 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D AF_1005 ABC transporter, ATP-binding protein, putative K01992 ABC-2.P; ABC-2 type transport system permease protein
D AF_1883 daunorubicin resistance membrane protein (drrB) K01992 ABC-2.P; ABC-2 type transport system permease protein
D AF_0290 polysaccharide ABC transporter, ATP-binding protein (rfbB-2) K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_1006 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_1136 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_1139 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_0393 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_1021 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_1300 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_1884 daunorubicin resistance ATP-binding protein (drrA) K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D AF_1820 predicted coding region AF_1820 K02004 ABC.CD.P; putative ABC transport system permease protein
D AF_1017 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D AF_1470 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D AF_1819 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D AF_1018 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D AF_1469 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D AF_2364 ABC transporter, ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D AF_1471 conserved hypothetical protein K26937 dinF; MATE family, multidrug efflux pump
D AF_0367 oxalate/formate antiporter (oxlT-2) K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D AF_1426 glycerol uptake facilitator, MIP channel (glpF) K02440 glpF; glycerol uptake facilitator
D AF_1673 potassium channel, putative K10716 kch; voltage-gated potassium channel
D AF_1749 ammonium transporter (amt-3) K03320 amt; ammonium transporter, Amt family
D AF_0977 ammonium transporter (amt-1) K03320 amt; ammonium transporter, Amt family
D AF_1746 ammonium transporter (amt-2) K03320 amt; ammonium transporter, Amt family
D AF_1444 predicted coding region AF_1444 K07114 yfbK; Ca-activated chloride channel homolog
D AF_1505 predicted coding region AF_1505 K07244 K07244; mgtE-like transporter
D AF_0786 magnesium and cobalt transporter (corA) K03284 corA; magnesium transporter
D AF_1533 conserved hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family
D AF_0806 L-lactate permease (lctP) K03303 lutP; lactate permease
D AF_0251 predicted coding region AF_0251 K07301 yrbG; cation:H+ antiporter
D AF_0846 Na+/H+ antiporter (nhe2) K03316 nhaP; Na+:H+ antiporter
D AF_1244 predicted coding region AF_1244 K07228 khtT; K+:H+ antiporter subunit KhtT
D AF_1245 Na+/H+ antiporter (napA-2) K26732 khtU; K+:H+ antiporter subunit KhtU
D AF_0839 TRK potassium uptake system protein (trkH) K03498 trkH; trk/ktr system potassium uptake protein
D AF_0218 TRK potassium uptake system protein (trkA-1) K03499 trkA; trk/ktr system potassium uptake protein
D AF_0838 TRK potassium uptake system protein (trkA-2) K03499 trkA; trk/ktr system potassium uptake protein
D AF_1415 chloride channel, putative K03281 clcA; chloride channel protein, CIC family
D AF_0475 conserved hypothetical protein K03325 ACR3; arsenite transporter
D AF_1755 conserved hypothetical protein K26605 azlC; branched chain amino acid efflux pump
D AF_1754 conserved hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D AF_2110 conserved hypothetical protein K09125 yhhQ; queuosine precursor transporter
D AF_0154 conserved hypothetical protein K07243 FTR; high-affinity iron transporter
D AF_2084 oxaloacetate decarboxylase, sodium ion pump subunit (oadB) K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D AF_2217 methylmalonyl-CoA decarboxylase, subunit alpha (mmdA) K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D AF_2216 methylmalonyl-CoA decarboxylase, biotin carboxyl carrier subunit (mmdC) K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D AF_2085 oxaloacetate decarboxylase, biotin carboxyl carrier subunit, putative K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D AF_0176 molybdopterin oxidoreductase, molybdopterin binding subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D AF_0175 molybdopterin oxidoreductase, iron-sulfur binding subunit K00184 dmsB; dimethyl sulfoxide reductase iron-sulfur subunit
D AF_0174 molybdopterin oxidoreductase, membrane subunit K00185 dmsC; dimethyl sulfoxide reductase membrane subunit
D AF_2396 conserved hypothetical protein K04758 feoA; ferrous iron transport protein A
D AF_2394 iron (II) transporter (feoB-2) K04759 feoB; ferrous iron transport protein B
D AF_0246 iron (II) transporter (feoB-1) K04759 feoB; ferrous iron transport protein B
D AF_1475 mitochondrial benzodiazepine receptor/sensory transduction protein K05770 TSPO; translocator protein
D AF_2192 cytochrome C-type biogenesis protein (nrfE) K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:afu02044]
D AF_1055 flagellin (flaB1-2) K07325 flaB; archaeal flagellin FlaB
D AF_1054 flagellin (flaB1-1) K07325 flaB; archaeal flagellin FlaB
D AF_1051 predicted coding region AF_1051 K07329 flaF; archaeal flagellar protein FlaF
D AF_1052 predicted coding region AF_1052 K07330 flaG; archaeal flagellar protein FlaG
D AF_1050 conserved hypothetical protein K07331 flaH; archaeal flagellar protein FlaH
D AF_1049 type II secretion system protein (gspE-4) K07332 flaI; archaeal flagellar protein FlaI
D AF_0996 type II secretion system protein (gspE-3) K07332 flaI; archaeal flagellar protein FlaI
D AF_0659 type II secretion system protein (gspE-2) K07332 flaI; archaeal flagellar protein FlaI
D AF_0338 type II secretion system protein (gspE-1) K07332 flaI; archaeal flagellar protein FlaI
D AF_1048 conserved hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D AF_0658 conserved hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D AF_0995 conserved hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D AF_0936 conserved hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
D AF_1764 dCMP deaminase, putative K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D AF_1902 protein translocase, subunit SEC61 alpha (secY) K03076 secY; preprotein translocase subunit SecY
D AF_0622 signal recognition particle, subunit SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D AF_2062 signal recognition particle receptor (dpa) K03110 ftsY; fused signal recognition particle receptor
D AF_0536 protein translocase, subunit SEC61 gamma (secE) K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins
D AF_1258 signal recognition particle, subunit SRP19 (srp19) K03105 SRP19; signal recognition particle subunit SRP19
D AF_2056 conserved hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA
D AF_0784 predicted coding region AF_0784 K03117 tatB; sec-independent protein translocase protein TatB
D AF_1344 conserved hypothetical transmembrane protein K03118 tatC; sec-independent protein translocase protein TatC
D AF_1512 conserved hypothetical protein K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins
C 02022 Two-component system [BR:afu02022]
D AF_1040 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D AF_1042 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D AF_1041 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D AF_2419 response regulator K02485 rssB; two-component system, response regulator
D AF_0449 response regulator K02485 rssB; two-component system, response regulator
D AF_1472 signal-transducing histidine kinase K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:afu02035]
D AF_1040 chemotaxis histidine kinase (cheA) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D AF_1044 purine-binding chemotaxis protein (cheW) K03408 cheW; purine-binding chemotaxis protein CheW
D AF_1039 conserved hypothetical protein K03410 cheC; chemotaxis protein CheC
D AF_1038 conserved hypothetical protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D AF_1037 chemotaxis protein methyltransferase (cheR) K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D AF_1041 protein-glutamate methylesterase (cheB) K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D AF_1042 chemotaxis response regulator (cheY) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D AF_1034 methyl-accepting chemotaxis protein (tlpC-1) K03406 mcp; methyl-accepting chemotaxis protein
D AF_1045 methyl-accepting chemotaxis protein (tlpC-2) K03406 mcp; methyl-accepting chemotaxis protein
D AF_1055 flagellin (flaB1-2) K07325 flaB; archaeal flagellin FlaB
D AF_1054 flagellin (flaB1-1) K07325 flaB; archaeal flagellin FlaB
D AF_1051 predicted coding region AF_1051 K07329 flaF; archaeal flagellar protein FlaF
D AF_1052 predicted coding region AF_1052 K07330 flaG; archaeal flagellar protein FlaG
D AF_1050 conserved hypothetical protein K07331 flaH; archaeal flagellar protein FlaH
D AF_1049 type II secretion system protein (gspE-4) K07332 flaI; archaeal flagellar protein FlaI
D AF_0996 type II secretion system protein (gspE-3) K07332 flaI; archaeal flagellar protein FlaI
D AF_0659 type II secretion system protein (gspE-2) K07332 flaI; archaeal flagellar protein FlaI
D AF_0338 type II secretion system protein (gspE-1) K07332 flaI; archaeal flagellar protein FlaI
D AF_1048 conserved hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D AF_0658 conserved hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D AF_0995 conserved hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ
D AF_0936 conserved hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:afu04812]
D AF_2310 conserved hypothetical protein K06990 MEMO1; MEMO1 family protein
D AF_2021 rod shape-determining protein (mreB) K03569 mreB; rod shape-determining protein MreB and related proteins
D AF_0535 cell division protein (ftsZ-1) K03531 ftsZ; cell division protein FtsZ
D AF_0570 cell division protein (ftsZ-2) K03531 ftsZ; cell division protein FtsZ
D AF_1215 cell division protein, putative K22222 cetZ; tubulin-like protein CetZ
D AF_0696 cell division inhibitor (minD-1) K03609 minD; septum site-determining protein MinD
D AF_1937 cell division inhibitor (minD-2) K03609 minD; septum site-determining protein MinD
C 04147 Exosome [BR:afu04147]
D AF_1132 enolase (eno) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D AF_1146 3-phosphoglycerate kinase (pgk) K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D AF_0270 alkyl hydroperoxide reductase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D AF_0937 translation elongation factor EF-1, subunit alpha (tuf) K03231 EEF1A; elongation factor 1-alpha
D AF_0744 GTP-binding protein K03231 EEF1A; elongation factor 1-alpha
D AF_1894 translation elongation factor EF-2 (fus) K03234 EEF2; elongation factor 2
D AF_0264 DNA repair protein RAD2 (rad2) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D AF_1113 SSU ribosomal protein S27AE (rps27AE) K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae
D AF_1297 cell division control protein 48, AAA family (cdc48-1) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_2098 cell division control protein 48, AAA family (cdc48-2) K13525 VCP; transitional endoplasmic reticulum ATPase
D AF_1029 long-chain-fatty-acid--CoA ligase (fadD-5) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_1772 long-chain-fatty-acid--CoA ligase (fadD-7) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_0200 long-chain-fatty-acid--CoA ligase (fadD-2) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_2368 long-chain-fatty-acid--CoA ligase (fadD-9) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D AF_0018 3-ketoacyl-CoA thiolase (acaB-1) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2416 3-ketoacyl-CoA thiolase (acaB-12) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0438 3-ketoacyl-CoA thiolase (acaB-8) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0283 3-ketoacyl-CoA thiolase (acaB-7) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0133 3-ketoacyl-CoA thiolase (acaB-3) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_0968 3-ketoacyl-CoA thiolase (acaB-10) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D AF_2000 S-adenosylhomocysteinase hydrolase (ahcY-2) K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AF_0886 S-adenosylhomocysteinase hydrolase (ahcY-1) K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D AF_0676 adenylate kinase (adk) K00939 adk; adenylate kinase [EC:2.7.4.3]
D AF_0883 argininosuccinate lyase (argH) K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D AF_2252 argininosuccinate synthetase (argG) K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D AF_0866 glycerol kinase (glpK) K00864 glpK; glycerol kinase [EC:2.7.1.30]
D AF_0949 glutamine synthetase (glnA) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D AF_1974 porphobilinogen synthase (hemB) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D AF_0813 phosphoglycerate dehydrogenase (serA) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D AF_1811 inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D AF_0287 electron transfer flavoprotein, subunit alpha (etfA) K03522 fixB; electron transfer flavoprotein alpha subunit
D AF_1304 triosephosphate isomerase (tpiA) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:afu02048]
D AF_2435 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D AF_1878 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D AF_2434 conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D AF_1876 conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D AF_0071 ATP-dependent RNA helicase, putative K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D AF_1874 predicted coding region AF_1874 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D AF_1875 predicted coding region AF_1875 K07475 cas3; CRISPR-associated endonuclease Cas3-HD [EC:3.1.-.-]
D AF_1879 predicted coding region AF_1879 K19085 csa1; CRISPR-associated protein Csa1
D AF_1871 conserved hypothetical protein K19074 csa2; CRISPR-associated protein Csa2
D AF_1869 predicted coding region AF_1869 K07725 csa3; CRISPR-associated protein Csa3
D AF_1870 predicted coding region AF_1870 K19087 csa5; CRISPR-associated protein Csa5
D AF_0068 conserved hypothetical protein K19075 cst2; CRISPR-associated protein Cst2
D AF_1877 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D AF_2181 predicted coding region AF_2181 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D AF_2436 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D AF_1872 predicted coding region AF_1872 K19089 cas5a_b_c; CRISPR-associated protein Cas5a/b/c
D AF_0072 conserved hypothetical protein K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D AF_1868 predicted coding region AF_1868 K07061 cmr1; CRISPR-associated protein Cmr1
D AF_1867 predicted coding region AF_1867 K19076 cmr2; CRISPR-associated protein Cmr2
D AF_1866 predicted coding region AF_1866 K09127 cmr3; CRISPR-associated protein Cmr3
D AF_1863 predicted coding region AF_1863 K09000 cmr4; CRISPR-associated protein Cmr4
D AF_1862 predicted coding region AF_1862 K19141 cmr5; CRISPR-associated protein Cmr5
D AF_1861 predicted coding region AF_1861 K19142 cmr6; CRISPR-associated protein Cmr6
D AF_1864 predicted coding region AF_1864 K19144 csx3; CRISPR-associated protein Csx3
D AF_1708 type I restriction-modification enzyme, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D AF_1710 type I restriction-modification enzyme, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D AF_1409 modification methylase, type III R/M system K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D AF_0535 cell division protein (ftsZ-1) K03531 ftsZ; cell division protein FtsZ
D AF_0570 cell division protein (ftsZ-2) K03531 ftsZ; cell division protein FtsZ
D AF_2021 rod shape-determining protein (mreB) K03569 mreB; rod shape-determining protein MreB and related proteins
D AF_0260 glutamyl-tRNA synthetase (gltX) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AF_0385 conserved hypothetical protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-]
D AF_0564 nifS protein, class-V aminotransferase (nifS-2) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AF_0186 nifS protein, class-V aminotransferase (nifS-1) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:afu04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:afu04090]
C 01504 Antimicrobial resistance genes
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:afu03100]
D AF_t39 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AF_t36 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AF_t21 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D AF_t09 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t22 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t14 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t19 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t25 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D AF_t07 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D AF_t06 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D AF_t28 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D AF_t02 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AF_t13 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D AF_t20 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AF_t26 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D AF_t38 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AF_t27 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AF_t18 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D AF_t16 tRNA-His K14226 tRNA-His; tRNA His
D AF_t01 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D AF_t17 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t08 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t10 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D AF_t43 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AF_t34 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D AF_t11 tRNA-Met K14230 tRNA-Met; tRNA Met
D AF_t44 tRNA-Met K14230 tRNA-Met; tRNA Met
D AF_t03 tRNA-Met K14230 tRNA-Met; tRNA Met
D AF_t41 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D AF_t42 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AF_t24 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AF_t37 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D AF_t04 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t15 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t23 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t31 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D AF_t33 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AF_t30 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AF_t29 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D AF_t46 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D AF_t35 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D AF_t45 tRNA-Val K14237 tRNA-Val; tRNA Val
D AF_t05 tRNA-Val K14237 tRNA-Val; tRNA Val
D AF_t32 tRNA-Val K14237 tRNA-Val; tRNA Val
D AF_r03 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D AF_r02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D AF_r01 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D AF_1828 NADH dehydrogenase, subunit 3 K22171 fqoA; F420H2:quinone oxidoreductase subunit A [EC:1.1.98.4]
D AF_1829 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative K22172 fqoBC; F420H2:quinone oxidoreductase subunit B/C [EC:1.1.98.4]
D AF_1830 F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD) K22173 fqoD; F420H2:quinone oxidoreductase subunit D [EC:1.1.98.4]
D AF_1833 F420H2:quinone oxidoreductase, 39 kDa subunit, putative K22174 fqoF; F420H2:quinone oxidoreductase subunit F [EC:1.1.98.4]
D AF_1831 F420H2:quinone oxidoreductase, 41.2 kDa subunit, putative K22175 fqoH; F420H2:quinone oxidoreductase subunit H [EC:1.1.98.4]
D AF_1823 F420H2:quinone oxidoreductase, 16.5 kDa subunit, putative K22177 fqoJ; F420H2:quinone oxidoreductase subunit J [EC:1.1.98.4]
D AF_1824 F420H2:quinone oxidoreductase, 11.2 kDa subunit, putative K22178 fqoK; F420H2:quinone oxidoreductase subunit K [EC:1.1.98.4]
D AF_1826 F420H2:quinone oxidoreductase, 72.4 kDa subunit (nuoL) K22179 fqoL; F420H2:quinone oxidoreductase subunit L [EC:1.1.98.4]
D AF_1825 F420H2:quinone oxidoreductase, 53.9 kDa subunit (nuoM) K22180 fqoM; F420H2:quinone oxidoreductase subunit M [EC:1.1.98.4]
D AF_1827 F420H2:quinone oxidoreductase, 43.2 kDa subunit, putative K22181 fqoN; F420H2:quinone oxidoreductase subunit N [EC:1.1.98.4]
D AF_1489 indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA) K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D AF_2030 indolepyruvate ferredoxin oxidoreductase, subunit beta (iorB) K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D AF_2411 conserved hypothetical protein K14728 K14728; phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase [EC:1.2.-.-]
D AF_0892 conserved hypothetical protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D AF_1209 conserved hypothetical protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D AF_0395 NADH oxidase (noxA-2) K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18]
D AF_0254 NADH oxidase (noxA-1) K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18]
D AF_0344 desulfoferrodoxin, putative K05919 dfx; superoxide reductase [EC:1.15.1.2]
D AF_0830 conserved hypothetical protein K18915 feR; ferric-chelate reductase [NAD(P)H] [EC:1.16.1.10]
D AF_0834 ferritin, putative K02217 ftnA; ferritin [EC:1.16.3.2]
D AF_1361 arsenate reductase (arsC) K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D AF_2316 conserved hypothetical protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5]
D AF_1450 pyruvate formate-lyase 2 activating enzyme (pflC) K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D AF_0117 pyruvate formate-lyase activating enzyme (act-1) K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D AF_1330 pyruvate formate-lyase activating enzyme (act-3) K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D AF_2278 pyruvate formate-lyase activating enzyme (act-4) K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D AF_1961 pyruvate formate-lyase activating enzyme (pflX) K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D AF_2322 L-isoaspartyl protein carboxyl methyltransferase (pcm-2) K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D AF_0036 L-isoaspartyl protein carboxyl methyltransferase (pcm-1) K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D AF_0381 diphthine synthase (dph5) K20215 dph5; diphthine synthase [EC:2.1.1.98]
D AF_0009 N5-methyltetrahydromethanopterin:coenzyme M methyltransferase (mtr) {Methanobacterium thermoautotro K25917 mtoA; [methyl-Co(III) methoxylated-aromatic-compound-specific corrinoid protein]---tetrahydromethanopterin methyltransferase [EC:2.1.1.384]
D AF_1307 conserved hypothetical protein K22882 K22882; thymidylate synthase [EC:2.1.1.-]
D AF_2108 conserved hypothetical protein K22882 K22882; thymidylate synthase [EC:2.1.1.-]
D AF_2195 deoxyhypusine synthase (dys1-1) K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D AF_2300 deoxyhypusine synthase (dys1-2) K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D AF_1611 conserved hypothetical protein K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128]
D AF_1275 conserved hypothetical protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D AF_0587 conserved hypothetical protein K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-]
D AF_1012 conserved hypothetical protein K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-]
D AF_1759 conserved hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D AF_1744 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA-2) K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D AF_1143 CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase (pgsA-1) K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39]
D AF_1104 conserved hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-]
D AF_0371 conserved hypothetical protein K03653 K03653; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D AF_2425 methanol dehydrogenase regulatory protein (moxR) K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D AF_0461 conserved hypothetical protein K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3]
D AF_0851 conserved hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D AF_0559 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D AF_1556 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D AF_2097 conserved hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D AF_1435 conserved hypothetical protein K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4]
D AF_0849 conserved hypothetical protein K07468 K07468; DNA/RNA ligase [EC:6.5.1.-]
D AF_0152 copper-transporting ATPase, P-type (copB) K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D AF_1516 sugar fermentation stimulation protein (sfsA) K06206 sfsA; sugar fermentation stimulation protein A
D AF_0811 conserved hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D AF_0372 conserved hypothetical protein K02379 fdhD; FdhD protein
D AF_0166 ferredoxin (fdx-2) K05337 fer; ferredoxin
D AF_0185 nifU protein (nifU-1) K04488 iscU; nitrogen fixation protein NifU and related proteins
D AF_0565 nifU protein (nifU-2) K04488 iscU; nitrogen fixation protein NifU and related proteins
D AF_0663 heterodisulfide reductase, subunit A (hdrA-1) K16885 qmoA; quinone-modifying oxidoreductase, subunit QmoA
D AF_0662 heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta K16886 qmoB; quinone-modifying oxidoreductase, subunit QmoB
D AF_0661 heterodisulfide reductase, subunit E, putative K16887 qmoC; quinone-modifying oxidoreductase, subunit QmoC
D AF_1403 conserved hypothetical protein K06862 ehbQ; energy-converting hydrogenase B subunit Q
D AF_0286 electron transfer flavoprotein, subunit beta (etfB) K03521 fixA; electron transfer flavoprotein beta subunit
D AF_2228 sulfite reductase, desulfoviridin-type subunit gamma (dsvC) K23077 dsrC; dissimilatory sulfite reductase related protein
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
D AF_2231 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D AF_2253 molybdopterin-guanine dinucleotide biosynthesis protein B (mobB) K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D AF_1977 conserved hypothetical protein K03627 MBF1; putative transcription factor
D AF_1956 conserved hypothetical protein K03622 ssh10b; archaea-specific DNA-binding protein
D AF_1067 conserved hypothetical protein K03622 ssh10b; archaea-specific DNA-binding protein
D AF_0875 snRNP, putative K04796 RUXX; small nuclear ribonucleoprotein
D AF_2182 conserved hypothetical protein K07743 K07743; transcriptional regulator
D AF_0111 conserved hypothetical protein K07744 K07744; transcriptional regulator
D AF_0796 conserved hypothetical protein K07745 K07745; transcriptional regulator
C 99974 Translation
D AF_1531 conserved hypothetical protein K07572 K07572; putative nucleotide binding protein
D AF_0532 mRNA 3'-end processing factor, putative K07577 K07577; putative mRNA 3-end processing factor
D AF_2361 mRNA 3'-end processing factor, putative K07577 K07577; putative mRNA 3-end processing factor
D AF_1318 predicted coding region AF_1318 K07578 K07578; homologs of the eukaryotic argonaute protein
D AF_0205 conserved hypothetical protein K07579 K07579; putative methylase
D AF_0573 predicted coding region AF_0573 K07580 K07580; Zn-ribbon RNA-binding protein
D AF_2318 conserved hypothetical protein K07581 K07581; RNA-binding protein
C 99975 Protein processing
D AF_1369 hydrogenase expression/formation protein (hypC) K04653 hypC; hydrogenase expression/formation protein HypC
D AF_1370 hydrogenase expression/formation protein (hypD) K04654 hypD; hydrogenase expression/formation protein HypD
D AF_1365 hydrogenase expression/formation protein (hypE) K04655 hypE; hydrogenase expression/formation protein HypE
D AF_1366 hydrogenase expression/formation regulatory protein (hypF) K04656 hypF; hydrogenase maturation protein HypF
D AF_2363 conserved hypothetical protein K07388 K07388; hydrogenase expression/formation protein
D AF_1285 cell division control protein, AAA family, putative K07392 PRS2; AAA family ATPase
D AF_0708 conserved hypothetical protein K07398 K07398; conserved protein with predicted RNA binding PUA domain
D AF_1781 nodulation protein NfeD (nfeD) K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D AF_1337 conserved hypothetical protein K07463 K07463; archaea-specific RecJ-like exonuclease
D AF_1813 TBP-interacting protein TIP49 K07472 TIP49; TBP-interacting protein
D AF_2260 conserved hypothetical protein K07477 K07477; translin
D AF_0679 ISA1083-1, putative transposase K07494 K07494; putative transposase
D AF_1352 ISA1083-2, putative transposase K07494 K07494; putative transposase
D AF_2139 ISA1083-3, putative transposase K07494 K07494; putative transposase
D AF_0309 ISA0963-2, putative transposase K07497 K07497; putative transposase
D AF_1071 predicted coding region AF_1071 K07497 K07497; putative transposase
D AF_1310 ISA0963-3, putative transposase K07497 K07497; putative transposase
D AF_1383 ISA0963-4, putative transposase K07497 K07497; putative transposase
D AF_1410 ISA0963-5, putative transposase K07497 K07497; putative transposase
D AF_1705 ISA0963-6, putative transposase K07497 K07497; putative transposase
D AF_0138 transposase IS240-A K07498 K07498; putative transposase
D AF_0895 transposase IS240-A K07498 K07498; putative transposase
D AF_0678 ISA1083-1, ISORF2 K07499 K07499; putative transposase
D AF_1351 ISA1083-2, ISORF2 K07499 K07499; putative transposase
D AF_2140 ISA1083-3, ISORF2 K07499 K07499; putative transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D AF_1798 phosphate permease, putative K03306 TC.PIT; inorganic phosphate transporter, PiT family
D AF_0237 pantothenate permease (panF-3) K03307 TC.SSS; solute:Na+ symporter, SSS family
D AF_1069 pantothenate permease (panF-1) K03307 TC.SSS; solute:Na+ symporter, SSS family
D AF_0969 proline permease (putP-2) K03307 TC.SSS; solute:Na+ symporter, SSS family
D AF_1995 sodium- and chloride-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C 99978 Cell growth
D AF_0378 CODH nickel-insertion accessory protein (cooC-1) K07321 cooC; CO dehydrogenase maturation factor
D AF_1685 CODH nickel-insertion accessory protein (cooC-2) K07321 cooC; CO dehydrogenase maturation factor
D AF_0624 conserved hypothetical protein K06384 spoIIM; stage II sporulation protein M
D AF_1778 stage V sporulation protein (spoVG) K06412 spoVG; stage V sporulation protein G
C 99993 Cell motility
D AF_1043 predicted coding region AF_1043 K09156 cheF; taxis protein CheF
D AF_1096 predicted coding region AF_1096 K23255 pilA; archaeal type IV pilus assembly protein PilA
C 99995 Signaling proteins
D AF_0418 conserved hypothetical protein K07176 K07176; putative serine/threonine protein kinase
D AF_0971 conserved hypothetical protein K07182 K07182; CBS domain-containing protein
D AF_0452 conserved hypothetical protein K08482 kaiC; circadian clock protein KaiC
D AF_2068 conserved hypothetical protein K06875 PDCD5; programmed cell death protein 5
C 99992 Structural proteins
C 99994 Others
D AF_1360 phosphate ABC transporter, regulatory protein (phoU) K02039 phoU; phosphate transport system protein
D AF_1978 periplasmic divalent cation tolerance protein (cutA) K03926 cutA; periplasmic divalent cation tolerance protein
D AF_0931 molybdenum cofactor biosynthesis protein (moeA-1) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
B
B 09194 Poorly characterized
C 99996 General function prediction only
D AF_1233 conserved hypothetical protein K04477 ycdX; putative hydrolase
D AF_1951 conserved hypothetical protein K06865 K06865; ATPase
D AF_2406 ATP-dependent RNA helicase, putative K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D AF_2365 conserved hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB
D AF_1188 conserved hypothetical protein K07038 K07038; inner membrane protein
D AF_0412 predicted coding region AF_0412 K07038 K07038; inner membrane protein
D AF_0899 conserved hypothetical protein K07049 K07049; TatD-related deoxyribonuclease
D AF_2370 conserved hypothetical protein K07143 K07143; UPF0148 protein
D AF_2040 conserved hypothetical protein K08971 K08971; putative membrane protein
D AF_2058 conserved hypothetical protein K08975 K08975; putative membrane protein
D AF_0210 predicted coding region AF_0210 K08979 K08979; putative membrane protein
D AF_0153 predicted coding region AF_0153 K08980 K08980; putative membrane protein
C 99997 Function unknown
D AF_1251 conserved hypothetical protein K06869 K06869; uncharacterized protein
D AF_0705 conserved hypothetical protein K06870 K06870; uncharacterized protein
D AF_2204 arylsulfatase regulatory protein, putative K06871 K06871; uncharacterized protein
D AF_1212 conserved hypothetical protein K06873 K06873; uncharacterized protein
D AF_1423 conserved hypothetical protein K06885 K06885; uncharacterized protein
D AF_1737 conserved hypothetical protein K06888 K06888; uncharacterized protein
D AF_0675 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase (todF) K06889 K06889; uncharacterized protein
D AF_1563 conserved hypothetical protein K06889 K06889; uncharacterized protein
D AF_2257 conserved hypothetical protein K06913 K06913; uncharacterized protein
D AF_2339 predicted coding region AF_2339 K06922 K06922; uncharacterized protein
D AF_0666 conserved hypothetical protein K06933 K06933; uncharacterized protein
D AF_0104 predicted coding region AF_0104 K06934 K06934; uncharacterized protein
D AF_1810 conserved hypothetical protein K06935 K06935; uncharacterized protein
D AF_0445 conserved hypothetical protein K06940 K06940; uncharacterized protein
D AF_0486 conserved hypothetical protein K06940 K06940; uncharacterized protein
D AF_1438 conserved hypothetical protein K06940 K06940; uncharacterized protein
D AF_1895 predicted coding region AF_1895 K06940 K06940; uncharacterized protein
D AF_2306 conserved hypothetical protein K06940 K06940; uncharacterized protein
D AF_0994 conserved hypothetical protein K06950 K06950; uncharacterized protein
D AF_1224 conserved hypothetical protein K06950 K06950; uncharacterized protein
D AF_1155 conserved hypothetical protein K06953 K06953; uncharacterized protein
D AF_1193 conserved hypothetical protein K06953 K06953; uncharacterized protein
D AF_0419 conserved hypothetical protein K06971 K06971; uncharacterized protein
D AF_0345 predicted coding region AF_0345 K06975 K06975; uncharacterized protein
D AF_0459 conserved hypothetical protein K07003 K07003; uncharacterized protein
D AF_1229 conserved hypothetical protein K07003 K07003; uncharacterized protein
D AF_0514 predicted coding region AF_0514 K07018 K07018; uncharacterized protein
D AF_0504 conserved hypothetical protein K07022 K07022; uncharacterized protein
D AF_0482 mRNA 3'-end processing factor, putative K07041 K07041; uncharacterized protein
D AF_1765 conserved hypothetical protein K07051 K07051; uncharacterized protein
D AF_0296 conserved hypothetical protein K07063 K07063; uncharacterized protein
D AF_1077 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_1089 predicted coding region AF_1089 K07064 K07064; uncharacterized protein
D AF_1091 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_1385 predicted coding region AF_1385 K07064 K07064; uncharacterized protein
D AF_1711 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_2012 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_2190 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_2213 conserved hypothetical protein, C-terminus K07064 K07064; uncharacterized protein
D AF_2360 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0293 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0313 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0315 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0317 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0318 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0320 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0065 conserved hypothetical protein K07064 K07064; uncharacterized protein
D AF_0300 predicted coding region AF_0300 K07065 K07065; uncharacterized protein
D AF_1683 conserved hypothetical protein K07065 K07065; uncharacterized protein
D AF_0099 predicted coding region AF_0099 K07066 K07066; uncharacterized protein
D AF_0132 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_0135 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_0203 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_0284 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_0437 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_0965 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_0966 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_1292 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_2417 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_0019 conserved hypothetical protein K07068 K07068; uncharacterized protein
D AF_1979 conserved hypothetical protein K07073 K07073; uncharacterized protein
D AF_1686 conserved hypothetical protein K07075 K07075; uncharacterized protein
D AF_0467 immunogenic protein (bcsp31-1) K07080 K07080; uncharacterized protein
D AF_0635 immunogenic protein (bcsp31-2) K07080 K07080; uncharacterized protein
D AF_0988 immunogenic protein (bcsp31-3) K07080 K07080; uncharacterized protein
D AF_1140 predicted coding region AF_1140 K07087 K07087; uncharacterized protein
D AF_2247 conserved hypothetical protein K07089 K07089; uncharacterized protein
D AF_2018 conserved hypothetical protein K07090 K07090; uncharacterized protein
D AF_2125 conserved hypothetical transmembrane protein K07090 K07090; uncharacterized protein
D AF_0124 conserved hypothetical transmembrane protein K07090 K07090; uncharacterized protein
D AF_0127 predicted coding region AF_0127 K07090 K07090; uncharacterized protein
D AF_0350 conserved hypothetical transmembrane protein K07090 K07090; uncharacterized protein
D AF_1015 conserved hypothetical protein K07090 K07090; uncharacterized protein
D AF_1508 predicted coding region AF_1508 K07090 K07090; uncharacterized protein
D AF_1525 conserved hypothetical protein K07090 K07090; uncharacterized protein
D AF_1561 conserved hypothetical protein K07090 K07090; uncharacterized protein
D AF_1632 conserved hypothetical protein K07090 K07090; uncharacterized protein
D AF_1688 conserved hypothetical protein K07090 K07090; uncharacterized protein
D AF_0187 conserved hypothetical protein K07092 K07092; uncharacterized protein
D AF_0563 conserved hypothetical protein K07092 K07092; uncharacterized protein
D AF_0799 conserved hypothetical protein K07095 K07095; uncharacterized protein
D AF_0919 conserved hypothetical protein K07095 K07095; uncharacterized protein
D AF_2180 conserved hypothetical protein K07095 K07095; uncharacterized protein
D AF_0533 conserved hypothetical protein K07096 K07096; uncharacterized protein
D AF_0239 xanthine-guanine phosphoribosyltransferase (gptA-1) K07101 K07101; uncharacterized protein
D AF_1789 xanthine-guanine phosphoribosyltransferase (gptA-2) K07101 K07101; uncharacterized protein
D AF_1020 predicted coding region AF_1020 K07103 K07103; uncharacterized protein
D AF_0184 predicted coding region AF_0184 K07108 K07108; uncharacterized protein
D AF_0566 conserved hypothetical protein K07108 K07108; uncharacterized protein
D AF_0384 conserved hypothetical protein K07111 K07111; uncharacterized protein
D AF_1064 ABC transporter, ATP-binding protein, putative K07128 K07128; uncharacterized protein
D AF_1217 conserved hypothetical protein K07129 K07129; uncharacterized protein
D AF_1500 conserved hypothetical protein K07131 K07131; uncharacterized protein
D AF_0375 predicted coding region AF_0375 K07135 K07135; uncharacterized protein
D AF_0654 conserved hypothetical protein K07137 K07137; uncharacterized protein
D AF_1153 iron-sulfur cluster binding protein K07138 K07138; uncharacterized protein
D AF_1248 conserved hypothetical protein K07150 K07150; uncharacterized protein
D AF_0591 conserved hypothetical protein K07158 K07158; uncharacterized protein
D AF_0525 conserved hypothetical protein K07159 K07159; uncharacterized protein
D AF_1105 conserved hypothetical protein K07162 K07162; uncharacterized protein
D AF_1183 predicted coding region AF_1183 K07163 K07163; uncharacterized protein
D AF_1107 conserved hypothetical protein K08999 K08999; uncharacterized protein
D AF_1496 predicted coding region AF_1496 K09003 K09003; uncharacterized protein
D AF_0913 predicted coding region AF_0913 K09004 K09004; uncharacterized protein
D AF_1421 conserved hypothetical protein K09118 K09118; uncharacterized protein
D AF_1433 conserved hypothetical protein K09120 K09120; uncharacterized protein
D AF_1431 predicted coding region AF_1431 K09122 K09122; uncharacterized protein
D AF_0103 conserved hypothetical protein K09126 K09126; uncharacterized protein
D AF_2422 predicted coding region AF_2422 K09129 K09129; uncharacterized protein
D AF_2072 conserved hypothetical protein K09131 K09131; uncharacterized protein
D AF_0261 predicted coding region AF_0261 K09133 K09133; uncharacterized protein
D AF_1250 conserved hypothetical protein K09135 K09135; uncharacterized protein
D AF_1969 conserved hypothetical protein K09141 K09141; uncharacterized protein
D AF_2241 predicted coding region AF_2241 K09143 K09143; uncharacterized protein
D AF_1103 predicted coding region AF_1103 K09147 K09147; uncharacterized protein
D AF_2325 predicted coding region AF_2325 K09148 K09148; uncharacterized protein
D AF_1545 predicted coding region AF_1545 K09149 K09149; uncharacterized protein
D AF_2427 predicted coding region AF_2427 K09150 K09150; uncharacterized protein
D AF_0782 predicted coding region AF_0782 K09152 K09152; uncharacterized protein
D AF_1834 conserved hypothetical protein K09154 K09154; uncharacterized protein
D AF_0170 predicted coding region AF_0170 K09155 K09155; uncharacterized protein
D AF_1814 predicted coding region AF_1814 K09706 K09706; uncharacterized protein
D AF_1477 predicted coding region AF_1477 K09707 K09707; uncharacterized protein
D AF_0420 conserved hypothetical protein K09715 K09715; uncharacterized protein
D AF_1967 conserved hypothetical protein K09717 K09717; uncharacterized protein
D AF_1501 predicted coding region AF_1501 K09718 K09718; uncharacterized protein
D AF_1543 predicted coding region AF_1543 K09719 K09719; uncharacterized protein
D AF_0407 conserved hypothetical protein K09725 K09725; uncharacterized protein
D AF_1782 conserved hypothetical protein K09728 K09728; uncharacterized protein
D AF_0204 conserved hypothetical protein K09729 K09729; uncharacterized protein
D AF_2154 conserved hypothetical protein K09730 K09730; uncharacterized protein
D AF_0282 conserved hypothetical protein K09731 K09731; uncharacterized protein
D AF_1549 conserved hypothetical protein K09732 K09732; uncharacterized protein
D AF_0460 conserved hypothetical protein K09737 K09737; uncharacterized protein
D AF_1068 conserved hypothetical protein K09738 K09738; uncharacterized protein
D AF_0649 conserved hypothetical protein K09740 K09740; uncharacterized protein
D AF_1182 predicted coding region AF_1182 K09743 K09743; uncharacterized protein
D AF_0357 predicted coding region AF_0357 K09744 K09744; uncharacterized protein
D AF_0779 predicted coding region AF_0779 K09746 K09746; uncharacterized protein
D AF_2149 conserved hypothetical protein K07220 K07220; uncharacterized protein
D AF_1799 conserved hypothetical protein K07220 K07220; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 22, 2024