+F Repair protein KO #

  DNA Repair and Recombination Proteins - Archaeoglobus fulgidus DSM 4304

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AF_2314 methylated-DNA-protein-cysteine methyltransferase (ogt) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E AF_1692 endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen E AF_0264 DNA repair protein RAD2 (rad2) K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors E AF_2418 DNA repair protein, putative K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors E AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen E AF_0623 DNA ligase (lig) K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D AF_0335 proliferating-cell nuclear antigen (pol30) K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AF_1234 mutator protein MutT (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF_1108 deoxycytidine triphosphate deaminase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AF_2314 methylated-DNA-protein-cysteine methyltransferase (ogt) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E AF_2277 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AF_2117 3-methyladenine DNA glycosylase (alkA) K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E AF_1692 endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AF_0580 exodeoxyribonuclease III (xthA) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AF_0129 conserved hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E AF_0075 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AF_0735 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E AF_0972 DNA polymerase III, subunit epsilon (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AF_1032 purine NTPase, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E AF_1031 DNA repair protein RAD32 (rad32) K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AF_0075 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AF_0735 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E AF_2435 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E AF_1878 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E AF_0993 DNA repair protein RAD51 (radA) K04483 radA; DNA repair protein RadA E AF_2096 DNA repair protein REC K04484 radB; DNA repair protein RadB E AF_1965 conserved hypothetical protein K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E AF_1032 purine NTPase, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E AF_1031 DNA repair protein RAD32 (rad32) K03547 sbcD; DNA repair protein SbcD/Mre11 E AF_1030 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E AF_1033 conserved hypothetical protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E AF_1726 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E AF_1725 DNA ligase, putative K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AF_0465 DNA gyrase, subunit A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AF_0530 DNA gyrase, subunit B (gyrB) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AF_1806 DNA topoisomerase I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AF_0075 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AF_0735 conserved hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AF_1149 large helicase-related protein (lhr-1) K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AF_1234 mutator protein MutT (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AF_1108 deoxycytidine triphosphate deaminase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AF_1664 ribonucleotide reductase (nrd) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D AF_1590 predicted coding region AF_1590 K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024