+E Transcription factors KO
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Transcription Factors - Agrobacterium sp. RAC06
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D BSY240_606 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D BSY240_2277 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BSY240_2190 helix-turn-helix domain protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D BSY240_3035 helix-turn-helix domain protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D BSY240_1642 helix-turn-helix domain protein K13652 K13652; AraC family transcriptional regulator
D BSY240_2526 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D BSY240_4625 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D BSY240_2036 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator
D BSY240_3846 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BSY240_1304 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BSY240_173 helix-turn-helix domain protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BSY240_1549 metal binding domain of Ada family protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D BSY240_2986 bacterial regulatory s, tetR family protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D BSY240_3140 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_4223 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_3776 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_3868 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_2425 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_949 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_3410 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_3427 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_1890 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSY240_3727 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D BSY240_3737 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D BSY240_2298 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BSY240_3448 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BSY240_4441 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D BSY240_3467 bacterial regulatory helix-turn-helix, lysR family protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D BSY240_58 bacterial regulatory helix-turn-helix, lysR family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
C DeoR family
D BSY240_2736 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D BSY240_24 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D BSY240_32 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_62 helix-turn-helix family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_3877 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_1493 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_3343 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_3349 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_2101 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_463 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_3762 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_4604 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSY240_3882 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BSY240_2801 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D BSY240_1565 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D BSY240_1903 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D BSY240_45 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D BSY240_3018 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D BSY240_2762 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BSY240_3704 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D BSY240_3632 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D BSY240_2599 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSY240_1852 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSY240_2790 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSY240_4612 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSY240_2209 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSY240_3380 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSY240_524 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D BSY240_3611 bacterial regulatory s, gntR family protein K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D BSY240_1541 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BSY240_3050 bacterial regulatory s, tetR family protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BSY240_4170 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator
D BSY240_3455 bacterial regulatory s, tetR family protein K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon
D BSY240_3820 bacterial regulatory s, tetR family protein K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D BSY240_2240 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSY240_837 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSY240_2464 iclR helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSY240_4269 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSY240_1344 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSY240_1701 bacterial regulatory, arsR family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSY240_906 bacterial regulatory, arsR family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSY240_276 bacterial regulatory, arsR family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D BSY240_309 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D BSY240_835 bacterial regulatory s, luxR family protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D BSY240_3047 bacterial regulatory s, luxR family protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D BSY240_4757 bacterial regulatory s, luxR family protein K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids
C MarR family
D BSY240_1513 winged helix DNA-binding domain protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BSY240_1919 merR regulatory family protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D BSY240_1415 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BSY240_1667 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D BSY240_1562 merR HTH regulatory family protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D BSY240_2414 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BSY240_735 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D BSY240_2703 ferric uptake regulator family protein K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D BSY240_4505 iclR helix-turn-helix domain protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D BSY240_3580 iclR helix-turn-helix domain protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D BSY240_3726 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D BSY240_2373 crp-like helix-turn-helix domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BSY240_3547 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BSY240_2595 crp-like helix-turn-helix domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BSY240_4354 crp-like helix-turn-helix domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BSY240_442 crp-like helix-turn-helix domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D BSY240_118 crp-like helix-turn-helix domain protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D BSY240_112 crp-like helix-turn-helix domain protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D BSY240_2053 Rrf2 family protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D BSY240_3943 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BSY240_263 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BSY240_3683 bacterial regulatory, arsR family protein K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D BSY240_4255 bacterial regulatory, arsR family protein K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D BSY240_3791 helix-turn-helix family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D BSY240_2076 helix-turn-helix family protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D BSY240_2555 helix-turn-helix domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D BSY240_1084 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BSY240_4449 helix-turn-helix family protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D BSY240_48 helix-turn-helix family protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D BSY240_4524 acoR; acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BSY240_1732 bacterial regulatory helix-turn-helix, lysR family protein K02019 modE; molybdate transport system regulatory protein
D BSY240_1433 helix-turn-helix domain protein K07726 K07726; putative transcriptional regulator
D BSY240_2251 helix-turn-helix family protein K07726 K07726; putative transcriptional regulator
D BSY240_4000 hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D BSY240_3576 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D BSY240_4270 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D BSY240_1835 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
C Others
D BSY240_3185 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BSY240_4770 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BSY240_2877 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BSY240_3072 carD-like/TRCF domain protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BSY240_1450 ros; transcriptional regulatory protein ros K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis
D BSY240_4559 rfaH; transcription elongation factor/antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D BSY240_2440 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D BSY240_70 TENA/THI-4/PQQC family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BSY240_122 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D BSY240_123 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase
D BSY240_1592 putative FMN-binding domain protein K07734 paiB; transcriptional regulator
D BSY240_1644 hypothetical protein K07735 algH; putative transcriptional regulator
D BSY240_369 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BSY240_1160 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D BSY240_194 mraZ family protein K03925 mraZ; transcriptional regulator MraZ
D BSY240_882 sel1 repeat family protein K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0