+E Transcription factors KO #

  Transcription Factors - Agrobacterium sp. RAC06

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D BSY240_606 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D BSY240_2277 dcm; DNA (cytosine-5-)-methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BSY240_2190 helix-turn-helix domain protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D BSY240_3035 helix-turn-helix domain protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D BSY240_1642 helix-turn-helix domain protein K13652 K13652; AraC family transcriptional regulator D BSY240_2526 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D BSY240_4625 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D BSY240_2036 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D BSY240_3846 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BSY240_1304 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BSY240_173 helix-turn-helix domain protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BSY240_1549 metal binding domain of Ada family protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BSY240_2986 bacterial regulatory s, tetR family protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA C LysR family D BSY240_3140 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_4223 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_3776 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_3868 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_2425 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_949 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_3410 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_3427 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_1890 bacterial regulatory helix-turn-helix, lysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BSY240_3727 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D BSY240_3737 bacterial regulatory helix-turn-helix, lysR family protein K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D BSY240_2298 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BSY240_3448 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BSY240_4441 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BSY240_3467 bacterial regulatory helix-turn-helix, lysR family protein K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D BSY240_58 bacterial regulatory helix-turn-helix, lysR family protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family D BSY240_2736 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D BSY240_24 deoR-like helix-turn-helix domain protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D BSY240_32 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_62 helix-turn-helix family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_3877 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_1493 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_3343 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_3349 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_2101 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_463 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_3762 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_4604 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BSY240_3882 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BSY240_2801 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D BSY240_1565 bacterial regulatory s, lacI family protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D BSY240_1903 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BSY240_45 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BSY240_3018 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BSY240_2762 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BSY240_3704 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BSY240_3632 UTRA domain protein K03710 K03710; GntR family transcriptional regulator D BSY240_2599 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSY240_1852 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSY240_2790 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSY240_4612 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSY240_2209 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSY240_3380 bacterial regulatory s, gntR family protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BSY240_524 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BSY240_3611 bacterial regulatory s, gntR family protein K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator C TetR/AcrR family D BSY240_1541 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D BSY240_3050 bacterial regulatory s, tetR family protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D BSY240_4170 bacterial regulatory s, tetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D BSY240_3455 bacterial regulatory s, tetR family protein K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon D BSY240_3820 bacterial regulatory s, tetR family protein K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family D BSY240_2240 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSY240_837 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSY240_2464 iclR helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSY240_4269 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSY240_1344 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSY240_1701 bacterial regulatory, arsR family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSY240_906 bacterial regulatory, arsR family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BSY240_276 bacterial regulatory, arsR family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D BSY240_309 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D BSY240_835 bacterial regulatory s, luxR family protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D BSY240_3047 bacterial regulatory s, luxR family protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D BSY240_4757 bacterial regulatory s, luxR family protein K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids C MarR family D BSY240_1513 winged helix DNA-binding domain protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D BSY240_1919 merR regulatory family protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D BSY240_1415 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BSY240_1667 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D BSY240_1562 merR HTH regulatory family protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D BSY240_2414 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BSY240_735 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BSY240_2703 ferric uptake regulator family protein K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D BSY240_4505 iclR helix-turn-helix domain protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D BSY240_3580 iclR helix-turn-helix domain protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D BSY240_3726 beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D BSY240_2373 crp-like helix-turn-helix domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BSY240_3547 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BSY240_2595 crp-like helix-turn-helix domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BSY240_4354 crp-like helix-turn-helix domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BSY240_442 crp-like helix-turn-helix domain protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D BSY240_118 crp-like helix-turn-helix domain protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D BSY240_112 crp-like helix-turn-helix domain protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator C Rrf2 family D BSY240_2053 Rrf2 family protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator C ArsR family D BSY240_3943 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BSY240_263 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BSY240_3683 bacterial regulatory, arsR family protein K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D BSY240_4255 bacterial regulatory, arsR family protein K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D BSY240_3791 helix-turn-helix family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D BSY240_2076 helix-turn-helix family protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D BSY240_2555 helix-turn-helix domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D BSY240_1084 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BSY240_4449 helix-turn-helix family protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D BSY240_48 helix-turn-helix family protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D BSY240_4524 acoR; acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BSY240_1732 bacterial regulatory helix-turn-helix, lysR family protein K02019 modE; molybdate transport system regulatory protein D BSY240_1433 helix-turn-helix domain protein K07726 K07726; putative transcriptional regulator D BSY240_2251 helix-turn-helix family protein K07726 K07726; putative transcriptional regulator D BSY240_4000 hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family D BSY240_3576 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D BSY240_4270 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BSY240_1835 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D BSY240_3185 bolA-like family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BSY240_4770 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BSY240_2877 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BSY240_3072 carD-like/TRCF domain protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D BSY240_1450 ros; transcriptional regulatory protein ros K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis D BSY240_4559 rfaH; transcription elongation factor/antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH D BSY240_2440 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D BSY240_70 TENA/THI-4/PQQC family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D BSY240_122 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D BSY240_123 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D BSY240_1592 putative FMN-binding domain protein K07734 paiB; transcriptional regulator D BSY240_1644 hypothetical protein K07735 algH; putative transcriptional regulator D BSY240_369 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BSY240_1160 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BSY240_194 mraZ family protein K03925 mraZ; transcriptional regulator MraZ D BSY240_882 sel1 repeat family protein K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0