+D GENES KO #

  KEGG Orthology (KO) - Aggregatibacter sp. oral taxon 513

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:agj00010] D J5A60_05230 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D J5A60_06750 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D J5A60_00015 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D J5A60_01080 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D J5A60_01865 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D J5A60_02325 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D J5A60_01085 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D J5A60_00440 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D J5A60_08230 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D J5A60_04895 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D J5A60_04025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D J5A60_04030 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D J5A60_02760 galM; galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D J5A60_00295 glucose-1-phosphatase K01085 agp; glucose-1-phosphatase [EC:3.1.3.10] D J5A60_03705 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D J5A60_07700 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D J5A60_03590 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D J5A60_03445 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:agj00020] D J5A60_03110 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D J5A60_03115 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_03125 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D J5A60_03120 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D J5A60_02580 frdA; fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D J5A60_02575 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D J5A60_02570 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C D J5A60_02565 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D D J5A60_06275 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D J5A60_05410 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D J5A60_07700 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D J5A60_04025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D J5A60_04030 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:agj00030] D J5A60_05230 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D J5A60_00380 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D J5A60_00385 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D J5A60_00405 gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D J5A60_09120 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D J5A60_08515 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D J5A60_08520 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D J5A60_07305 rpiA; ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D J5A60_09185 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D J5A60_02960 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D J5A60_07315 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D J5A60_05320 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D J5A60_01080 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D J5A60_06750 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D J5A60_00015 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:agj00040] D J5A60_08255 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D J5A60_09120 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:agj00051] D J5A60_05300 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D J5A60_03435 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D J5A60_00445 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D J5A60_08260 phosphomannomutase CpsG K01840 manB; phosphomannomutase [EC:5.4.2.8] D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D J5A60_06750 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D J5A60_00015 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D J5A60_08430 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D J5A60_01080 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D J5A60_01865 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D J5A60_08425 PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] C 00052 Galactose metabolism [PATH:agj00052] D J5A60_02760 galM; galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D J5A60_02755 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D J5A60_02750 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D J5A60_05790 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D J5A60_08255 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D J5A60_05305 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] C 00053 Ascorbate and aldarate metabolism D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:agj00500] D J5A60_06460 PTS sucrose transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D J5A60_05305 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D J5A60_08255 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D J5A60_04580 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D J5A60_04585 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21] D J5A60_04570 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D J5A60_03205 malQ; 4-alpha-glucanotransferase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D J5A60_04590 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D J5A60_04575 glgX; glycogen debranching protein GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196] D J5A60_04565 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D J5A60_03590 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D J5A60_03195 PTS transporter subunit EIIC K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D J5A60_03200 endonuclease/exonuclease/phosphatase family protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90] D J5A60_05230 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D J5A60_05300 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:agj00520] D J5A60_07125 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D J5A60_03590 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D J5A60_05920 PTS transporter subunit EIIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D J5A60_05875 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D J5A60_05880 glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D J5A60_05300 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D J5A60_08345 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D J5A60_03855 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D J5A60_08490 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D J5A60_08500 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D J5A60_08495 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D J5A60_02245 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D J5A60_08665 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D J5A60_05895 N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60] D J5A60_05900 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D J5A60_05885 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D J5A60_01260 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D J5A60_03445 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D J5A60_08255 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D J5A60_02755 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D J5A60_02750 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D J5A60_05790 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D J5A60_05230 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D J5A60_03435 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D J5A60_00445 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D J5A60_08260 phosphomannomutase CpsG K01840 manB; phosphomannomutase [EC:5.4.2.8] D J5A60_04580 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:agj00620] D J5A60_04025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D J5A60_04030 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_07145 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D J5A60_04160 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D J5A60_04155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D J5A60_04895 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D J5A60_05770 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D J5A60_01885 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D J5A60_01890 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D J5A60_04360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D J5A60_03160 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D J5A60_06800 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D J5A60_05645 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D J5A60_06625 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D J5A60_03105 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D J5A60_03455 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D J5A60_02025 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D J5A60_04870 oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D J5A60_04875 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D J5A60_04865 oxaloacetate decarboxylase subunit gamma K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D J5A60_05410 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D J5A60_06275 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D J5A60_02580 frdA; fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D J5A60_02575 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D J5A60_02570 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C D J5A60_02565 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D D J5A60_07700 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D J5A60_01440 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:agj00630] D J5A60_05410 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D J5A60_04060 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D J5A60_09115 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D J5A60_02215 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D J5A60_06445 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_07315 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D J5A60_05340 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D J5A60_05345 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D J5A60_05350 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D J5A60_05080 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:agj00640] D J5A60_04160 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D J5A60_04155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_07145 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D J5A60_05770 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D J5A60_01885 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D J5A60_01890 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D J5A60_04360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D J5A60_03120 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D J5A60_03125 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D J5A60_03150 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:agj00650] D J5A60_04875 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D J5A60_02580 frdA; fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D J5A60_02575 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D J5A60_02570 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C D J5A60_02565 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D D J5A60_07145 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D J5A60_01060 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05095 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05100 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D J5A60_01055 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:agj00660] D J5A60_01060 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05095 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05100 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D J5A60_01055 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D J5A60_03120 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D J5A60_03125 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D J5A60_01430 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D J5A60_01425 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D J5A60_01435 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:agj00562] D J5A60_02845 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D J5A60_01865 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:agj00190] D J5A60_04300 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D J5A60_02580 frdA; fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D J5A60_02575 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D J5A60_02570 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C D J5A60_02565 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D D J5A60_06560 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D J5A60_06555 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D J5A60_09205 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D J5A60_09195 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D J5A60_09200 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D J5A60_09210 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D J5A60_09190 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D J5A60_09225 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D J5A60_09215 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D J5A60_09220 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D J5A60_01410 ppa; inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:agj00680] D J5A60_05340 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D J5A60_05345 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit D J5A60_05350 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D J5A60_06445 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D J5A60_04060 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D J5A60_08230 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D J5A60_05410 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D J5A60_01080 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D J5A60_06750 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D J5A60_00015 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D J5A60_04160 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D J5A60_04155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D J5A60_00440 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D J5A60_07310 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D J5A60_06315 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D J5A60_07455 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:agj00910] D J5A60_08645 napA; nitrate reductase catalytic subunit NapA K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D J5A60_08630 nitrate reductase cytochrome c-type subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D J5A60_02085 nrfA; ammonia-forming nitrite reductase cytochrome c552 subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D J5A60_02550 nitric-oxide reductase large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D J5A60_01775 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D J5A60_02215 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D J5A60_00690 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D J5A60_04255 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:agj00920] D J5A60_00375 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D J5A60_02910 glpE; thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D J5A60_07280 glpE; thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D J5A60_00020 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D J5A60_07205 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D J5A60_05120 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D J5A60_06795 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:agj00061] D J5A60_05770 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D J5A60_01885 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D J5A60_01890 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D J5A60_04360 accD; acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D J5A60_01000 acyl carrier protein K02078 acpP; acyl carrier protein D J5A60_00915 acyl carrier protein K02078 acpP; acyl carrier protein D J5A60_00920 acyl carrier protein K02078 acpP; acyl carrier protein D J5A60_01670 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D J5A60_01660 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D J5A60_01025 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D J5A60_01655 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D J5A60_00995 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_00970 beta-ketoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_02720 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_00985 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D J5A60_00980 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_01665 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_05020 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D J5A60_01500 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D J5A60_06175 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D J5A60_06205 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D J5A60_01760 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_03725 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:agj00071] D J5A60_01760 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_03725 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:agj00561] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D J5A60_04285 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D J5A60_01370 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D J5A60_01650 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D J5A60_02015 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D J5A60_07165 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D J5A60_07925 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:agj00564] D J5A60_00025 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D J5A60_04295 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D J5A60_01370 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D J5A60_02015 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D J5A60_07165 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D J5A60_07925 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D J5A60_01075 alpha/beta hydrolase K01048 pldB; lysophospholipase [EC:3.1.1.5] D J5A60_07580 glpQ; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D J5A60_01475 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D J5A60_01535 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D J5A60_01105 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D J5A60_01610 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D J5A60_06220 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D J5A60_01525 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D J5A60_03755 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D J5A60_05210 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D J5A60_03615 phosphatase PAP2 family protein K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D J5A60_04375 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids [PATH:agj01040] D J5A60_03645 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D J5A60_02675 yciA; acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:agj00230] D J5A60_02535 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D J5A60_00350 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D J5A60_02960 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D J5A60_04175 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D J5A60_06450 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D J5A60_08195 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D J5A60_00200 purT; formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D J5A60_01935 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D J5A60_08190 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D J5A60_04710 purK; 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D J5A60_04705 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D J5A60_05975 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D J5A60_07815 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D J5A60_06455 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D J5A60_03340 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D J5A60_09145 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D J5A60_00345 yrfG; GMP/IMP nucleotidase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D J5A60_00645 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D J5A60_07640 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D J5A60_06920 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D J5A60_05745 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D J5A60_02785 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D J5A60_07290 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D J5A60_08690 gpt; xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D J5A60_05765 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D J5A60_02330 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D J5A60_05175 nrdA; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D J5A60_05185 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D J5A60_01755 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D J5A60_05470 deoxyguanosinetriphosphate triphosphohydrolase family protein K01129 dgt; dGTPase [EC:3.1.5.1] D J5A60_05375 yfbR; 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D J5A60_02340 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D J5A60_07695 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D J5A60_07920 relA; GTP diphosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D J5A60_07675 class I adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D J5A60_02860 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D J5A60_06015 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D J5A60_05805 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D J5A60_08280 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D J5A60_02540 cpdA; 3',5'-cyclic-AMP phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D J5A60_08150 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D J5A60_00690 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:agj00240] D J5A60_04695 pyrD; quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D J5A60_07860 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D J5A60_03265 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D J5A60_01455 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D J5A60_02785 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D J5A60_08280 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D J5A60_08220 pyrG; CTP synthase (glutamine hydrolyzing) K01937 pyrG; CTP synthase [EC:6.3.4.2] D J5A60_03240 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D J5A60_06375 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D J5A60_09145 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D J5A60_00660 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D J5A60_07340 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D J5A60_08165 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D J5A60_06015 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D J5A60_03040 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D J5A60_04555 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D J5A60_01755 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D J5A60_06370 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D J5A60_05175 nrdA; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D J5A60_05185 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D J5A60_05375 yfbR; 5'-deoxynucleotidase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D J5A60_01585 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D J5A60_01205 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D J5A60_07225 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D J5A60_01835 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D J5A60_04880 SDR family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:agj00250] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_00670 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D J5A60_01980 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D J5A60_00625 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D J5A60_05985 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D J5A60_01780 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D J5A60_02860 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D J5A60_07815 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D J5A60_01775 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D J5A60_02560 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D J5A60_02215 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D J5A60_08345 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D J5A60_04175 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:agj00260] D J5A60_06775 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D J5A60_02180 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D J5A60_08170 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D J5A60_02175 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D J5A60_02170 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D J5A60_06445 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D J5A60_04060 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D J5A60_00440 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D J5A60_07310 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D J5A60_06315 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D J5A60_07455 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D J5A60_04880 SDR family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_01105 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D J5A60_01035 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D J5A60_04890 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D J5A60_04885 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:agj00270] D J5A60_00020 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D J5A60_07205 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D J5A60_03760 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D J5A60_05265 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D J5A60_03215 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D J5A60_01955 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D J5A60_06135 5'-methylthioadenosine/adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D J5A60_07640 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D J5A60_07835 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D J5A60_00205 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D J5A60_06775 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D J5A60_02180 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D J5A60_08170 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D J5A60_05120 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D J5A60_06795 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D J5A60_03775 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D J5A60_05405 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D J5A60_06855 gshAB; bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_05410 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D J5A60_07310 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D J5A60_06315 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:agj00280] D J5A60_05405 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:agj00290] D J5A60_01035 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D J5A60_01430 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D J5A60_01425 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D J5A60_01435 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D J5A60_01060 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05095 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05100 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D J5A60_01055 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D J5A60_07510 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D J5A60_01045 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D J5A60_05405 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D J5A60_01980 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D J5A60_01440 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:agj00300] D J5A60_06775 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D J5A60_02180 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D J5A60_08170 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D J5A60_02195 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D J5A60_05200 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D J5A60_04015 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D J5A60_02525 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D J5A60_00885 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D J5A60_08740 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D J5A60_02440 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D J5A60_02445 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:agj00310] D J5A60_03115 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:agj00220] D J5A60_00685 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D J5A60_05985 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D J5A60_01780 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D J5A60_02215 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D J5A60_00690 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D J5A60_01775 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_01980 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] C 00330 Arginine and proline metabolism [PATH:agj00330] D J5A60_04555 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D J5A60_08540 FAD-binding oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D J5A60_02135 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D J5A60_02560 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D J5A60_01545 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D J5A60_06770 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:agj00340] D J5A60_06320 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:agj00350] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_06320 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00360 Phenylalanine metabolism [PATH:agj00360] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_06320 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism [PATH:agj00380] D J5A60_03115 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:agj00400] D J5A60_05245 aroG; 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D J5A60_01880 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D J5A60_07495 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D J5A60_06325 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D J5A60_03320 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D J5A60_04795 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D J5A60_04800 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D J5A60_04810 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D J5A60_04815 trpCF; bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D J5A60_04890 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D J5A60_04885 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D J5A60_03995 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D J5A60_02505 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_06320 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00430 Taurine and hypotaurine metabolism [PATH:agj00430] D J5A60_04155 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D J5A60_04160 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:agj00450] D J5A60_06795 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D J5A60_03760 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D J5A60_05265 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D J5A60_03215 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D J5A60_03665 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D J5A60_05275 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] D J5A60_00085 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D J5A60_02795 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:agj00460] D J5A60_00670 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D J5A60_06445 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:agj00470] D J5A60_05235 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D J5A60_02475 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D J5A60_02355 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D J5A60_02455 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D J5A60_00885 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D J5A60_08740 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:agj00480] D J5A60_06855 gshAB; bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D J5A60_06070 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D J5A60_02780 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D J5A60_04700 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D J5A60_08685 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D J5A60_01185 gorA; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D J5A60_00405 gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D J5A60_00380 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D J5A60_08590 redoxin family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D J5A60_08620 gss; bifunctional glutathionylspermidine amidase/synthase K01460 gsp; glutathionylspermidine amidase/synthetase [EC:3.5.1.78 6.3.1.8] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:agj00540] D J5A60_01505 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D J5A60_02495 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D J5A60_01495 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D J5A60_07170 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D J5A60_01510 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D J5A60_04125 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D J5A60_04785 KpsF/GutQ family sugar isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D J5A60_03820 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D J5A60_04790 HAD family hydrolase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D J5A60_04115 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D J5A60_00850 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D J5A60_05510 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D J5A60_03335 lpxM; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D J5A60_00860 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D J5A60_02380 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D J5A60_05505 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D J5A60_00545 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D J5A60_08610 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D J5A60_08615 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] C 00542 O-Antigen repeat unit biosynthesis [PATH:agj00542] D J5A60_05575 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:agj00541] D J5A60_08255 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D J5A60_05790 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D J5A60_03965 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D J5A60_03435 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D J5A60_00445 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D J5A60_08260 phosphomannomutase CpsG K01840 manB; phosphomannomutase [EC:5.4.2.8] D J5A60_08490 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D J5A60_01260 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:agj00550] D J5A60_02245 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D J5A60_08665 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D J5A60_02470 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D J5A60_02455 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D J5A60_02440 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D J5A60_02475 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D J5A60_02445 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D J5A60_01470 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D J5A60_02450 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D J5A60_02465 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D J5A60_02655 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D J5A60_01175 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D J5A60_05640 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D J5A60_02950 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D J5A60_01700 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D J5A60_02435 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D J5A60_01715 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D J5A60_04200 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:agj00552] D J5A60_05575 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:agj00543] D J5A60_05575 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D J5A60_00020 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:agj00730] D J5A60_05945 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D J5A60_02830 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D J5A60_04955 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D J5A60_04340 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D J5A60_08225 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D J5A60_05215 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D J5A60_03575 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D J5A60_05805 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D J5A60_07420 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:agj00740] D J5A60_03610 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D J5A60_05385 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D J5A60_00895 yigB; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D J5A60_08080 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D J5A60_05225 ribE; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D J5A60_04215 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D J5A60_07435 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D J5A60_00415 aphA; acid phosphatase AphA K03788 aphA; acid phosphatase (class B) [EC:3.1.3.2] D J5A60_02535 nudF; ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:agj00750] D J5A60_05775 pdxY; pyridoxal kinase PdxY K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D J5A60_06315 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D J5A60_02170 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:agj00760] D J5A60_00645 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D J5A60_08085 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D J5A60_09145 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D J5A60_08280 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D J5A60_08370 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D J5A60_02885 NAD-dependent deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D J5A60_02695 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D J5A60_05285 pntA; Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D J5A60_05280 pntB; Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] C 00770 Pantothenate and CoA biosynthesis [PATH:agj00770] D J5A60_01060 acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05095 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D J5A60_05100 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D J5A60_01055 ilvM; acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D J5A60_07510 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D J5A60_01045 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D J5A60_08720 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D J5A60_01210 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D J5A60_08280 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D J5A60_00855 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D J5A60_06980 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D J5A60_02165 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D J5A60_05405 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:agj00780] D J5A60_01630 bioC; malonyl-ACP O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D J5A60_00995 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_00970 beta-ketoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_02720 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_00985 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D J5A60_00980 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_01665 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_01500 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D J5A60_06175 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D J5A60_06205 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D J5A60_01625 DUF452 family protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D J5A60_01620 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D J5A60_01615 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D J5A60_01635 bioD; ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D J5A60_04900 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D J5A60_05925 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D J5A60_05740 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:agj00785] D J5A60_01725 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D J5A60_01730 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_04025 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D J5A60_04030 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D J5A60_03110 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D J5A60_03115 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] C 00790 Folate biosynthesis [PATH:agj00790] D J5A60_04195 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D J5A60_06595 nudB; dihydroneopterin triphosphate diphosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D J5A60_02010 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D J5A60_04150 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D J5A60_03850 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D J5A60_01560 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D J5A60_04365 folC; bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D J5A60_03610 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D J5A60_04055 anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D J5A60_04050 aminodeoxychorismate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D J5A60_04045 aminotransferase class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D J5A60_05060 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D J5A60_04940 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D J5A60_04935 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D J5A60_04925 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D J5A60_01540 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D J5A60_04190 moeA; molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D J5A60_08445 mobA; molybdenum cofactor guanylyltransferase MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:agj00670] D J5A60_01560 folA; type 3 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D J5A60_00605 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D J5A60_06445 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D J5A60_08195 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D J5A60_06455 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D J5A60_08030 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D J5A60_05265 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D J5A60_01835 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D J5A60_05080 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D J5A60_06055 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D J5A60_07625 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:agj00860] D J5A60_01810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D J5A60_03460 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D J5A60_05580 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D J5A60_00315 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D J5A60_07670 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D J5A60_07665 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D J5A60_08365 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D J5A60_01855 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D J5A60_08060 hemG; menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D J5A60_05870 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D J5A60_07660 uroporphyrinogen-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:agj00130] D J5A60_02350 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D J5A60_01975 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D J5A60_01970 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D J5A60_01965 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D J5A60_01875 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D J5A60_03310 menE; o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D J5A60_01870 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D J5A60_05865 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D J5A60_06895 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D J5A60_05520 NAD(P)H-dependent oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D J5A60_00265 SDR family oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:agj00900] D J5A60_04340 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D J5A60_01465 ispC; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D J5A60_09130 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D J5A60_02965 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D J5A60_09135 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D J5A60_07370 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D J5A60_07400 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D J5A60_04345 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D J5A60_06660 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D J5A60_01470 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D J5A60_08515 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D J5A60_03965 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D J5A60_01975 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D J5A60_03965 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:agj00332] D J5A60_01545 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D J5A60_06770 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:agj00261] D J5A60_06775 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4] D J5A60_02180 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D J5A60_08170 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D J5A60_02195 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D J5A60_05200 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:agj00521] D J5A60_02845 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D J5A60_03965 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis D J5A60_03965 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:agj00401] D J5A60_03995 tyrA; bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_06320 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D J5A60_04795 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D J5A60_04800 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D J5A60_01660 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D J5A60_00980 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_01665 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_06175 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D J5A60_06205 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D J5A60_01000 acyl carrier protein K02078 acpP; acyl carrier protein D J5A60_00915 acyl carrier protein K02078 acpP; acyl carrier protein D J5A60_00920 acyl carrier protein K02078 acpP; acyl carrier protein D J5A60_01670 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:agj00999] D J5A60_01955 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D J5A60_07495 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:agj00362] D J5A60_07715 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D J5A60_04875 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] C 00627 Aminobenzoate degradation D J5A60_03160 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:agj00625] D J5A60_04960 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D J5A60_07715 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation D J5A60_04835 hybC; hydrogenase 2 large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D J5A60_04820 hybO; hydrogenase 2 small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D J5A60_07715 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:agj03020] D J5A60_08380 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D J5A60_08375 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D J5A60_00835 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D J5A60_02335 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:agj03010] D J5A60_03245 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D J5A60_07900 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D J5A60_00740 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D J5A60_00830 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D J5A60_00795 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D J5A60_01360 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D J5A60_07525 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D J5A60_00780 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D J5A60_04980 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D J5A60_00705 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D J5A60_00825 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D J5A60_07520 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D J5A60_00820 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D J5A60_00775 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D J5A60_01960 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D J5A60_07600 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D J5A60_00755 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D J5A60_01350 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D J5A60_00730 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D J5A60_07445 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D J5A60_07240 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D J5A60_08395 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D J5A60_00725 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D J5A60_00710 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D J5A60_00715 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D J5A60_00770 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D J5A60_00785 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D J5A60_08385 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D J5A60_01345 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D J5A60_08390 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D J5A60_08400 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D J5A60_04985 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D J5A60_00760 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D J5A60_00805 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D J5A60_00745 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D J5A60_00840 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D J5A60_00790 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D J5A60_07585 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D J5A60_04335 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D J5A60_06665 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D J5A60_00735 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D J5A60_00720 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D J5A60_00765 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D J5A60_04600 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D J5A60_06670 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D J5A60_01220 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D J5A60_00750 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D J5A60_00800 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D J5A60_01245 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D J5A60_06700 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D J5A60_01645 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D J5A60_01225 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D J5A60_07035 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D J5A60_04330 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D J5A60_00815 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D J5A60_06695 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D J5A60_00550 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_08055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_02360 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_05730 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_05555 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_00150 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_00160 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_05715 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_08045 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_00565 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_02370 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_05540 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_02375 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_08040 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_05710 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_05535 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00575 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00570 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00165 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:agj00970] D J5A60_01815 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_00560 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_05545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_05720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_05570 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_00230 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_00225 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_00595 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_07770 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D J5A60_03410 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D J5A60_00580 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D J5A60_06340 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D J5A60_06345 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D J5A60_06785 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D J5A60_03480 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D J5A60_03485 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D J5A60_00155 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D J5A60_08050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D J5A60_02365 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D J5A60_08705 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_03560 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_03565 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_06790 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_03750 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_05565 tRNA-His K14226 tRNA-His; tRNA His D J5A60_00555 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D J5A60_05550 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D J5A60_05725 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D J5A60_02640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_05485 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_03745 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_06780 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_03475 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_03740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_06505 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_06510 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_06515 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_03470 tRNA-Met K14230 tRNA-Met; tRNA Met D J5A60_06740 tRNA-Met K14230 tRNA-Met; tRNA Met D J5A60_03880 tRNA-Met K14230 tRNA-Met; tRNA Met D J5A60_07255 tRNA-Ile K14230 tRNA-Met; tRNA Met D J5A60_07775 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D J5A60_00600 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D J5A60_05560 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D J5A60_06825 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D J5A60_07325 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D J5A60_00235 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D J5A60_08700 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D J5A60_08715 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D J5A60_00585 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D J5A60_08710 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D J5A60_01800 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_01805 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_01795 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_01790 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_05015 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_09165 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D J5A60_01810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D J5A60_04415 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D J5A60_08270 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D J5A60_06605 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D J5A60_04910 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D J5A60_00275 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D J5A60_00310 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D J5A60_04320 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D J5A60_03035 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D J5A60_00085 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D J5A60_01735 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D J5A60_02795 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D J5A60_08030 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D J5A60_06255 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D J5A60_08140 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D J5A60_07430 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D J5A60_06165 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D J5A60_03795 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D J5A60_00090 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D J5A60_07365 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D J5A60_04765 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D J5A60_04760 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D J5A60_05295 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D J5A60_09110 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:agj03060] D J5A60_00810 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D J5A60_08410 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D J5A60_02635 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D J5A60_06435 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D J5A60_06440 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D J5A60_06430 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D J5A60_07020 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D J5A60_08115 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D J5A60_00030 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D J5A60_01375 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D J5A60_03650 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D J5A60_07950 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D J5A60_00330 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D J5A60_00325 tatB; Sec-independent protein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D J5A60_00320 tatC; Sec-independent protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D J5A60_07080 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D J5A60_07405 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:agj04122] D J5A60_02830 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D J5A60_08075 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D J5A60_06425 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D J5A60_08560 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D J5A60_08565 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C D J5A60_08570 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D J5A60_03185 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D J5A60_07710 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D J5A60_04925 moaE; molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D J5A60_04940 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D J5A60_04930 moaD; molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein D J5A60_04185 moeB; molybdopterin-synthase adenylyltransferase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D J5A60_04935 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D J5A60_01540 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D J5A60_04955 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:agj03018] D J5A60_01820 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D J5A60_06820 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D J5A60_01685 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D J5A60_08230 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D J5A60_06935 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D J5A60_07565 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D J5A60_06925 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D J5A60_08730 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D J5A60_01680 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D J5A60_03785 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D J5A60_00610 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D J5A60_03535 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D J5A60_04145 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:agj03030] D J5A60_06335 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D J5A60_01765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D J5A60_03345 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D J5A60_01580 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D J5A60_08130 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D J5A60_06470 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D J5A60_06270 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D J5A60_07045 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D J5A60_05240 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D J5A60_07245 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D J5A60_01115 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_06330 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D J5A60_01515 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D J5A60_00255 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D J5A60_07220 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:agj03410] D J5A60_05455 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D J5A60_07095 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D J5A60_07790 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D J5A60_01230 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D J5A60_08510 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D J5A60_03955 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D J5A60_00255 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D J5A60_06145 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D J5A60_07220 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:agj03420] D J5A60_06830 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D J5A60_01110 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D J5A60_03415 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D J5A60_04110 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D J5A60_05310 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D J5A60_00255 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D J5A60_07220 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:agj03430] D J5A60_00170 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D J5A60_03545 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D J5A60_02225 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D J5A60_05310 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D J5A60_04650 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D J5A60_02305 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D J5A60_04350 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D J5A60_06145 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D J5A60_01115 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_01765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D J5A60_07045 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D J5A60_03345 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D J5A60_08130 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D J5A60_01580 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D J5A60_06335 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D J5A60_06270 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D J5A60_06470 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D J5A60_07220 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D J5A60_01140 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:agj03440] D J5A60_06145 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D J5A60_01115 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_07050 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D J5A60_07910 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D J5A60_02625 recR; recombination protein RecR K06187 recR; recombination protein RecR D J5A60_08755 recA; recombinase RecA K03553 recA; recombination protein RecA D J5A60_00255 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D J5A60_06575 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D J5A60_06570 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D J5A60_06580 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D J5A60_02345 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D J5A60_05000 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D J5A60_06480 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D J5A60_04995 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D J5A60_01765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D J5A60_07045 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D J5A60_03345 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D J5A60_08130 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D J5A60_01580 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D J5A60_06335 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D J5A60_06270 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D J5A60_06470 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D J5A60_01275 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D J5A60_01355 priB; primosomal replication protein N K02686 priB; primosomal replication protein N D J5A60_06640 primosomal replication protein K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:agj02010] D J5A60_07425 ABC transporter substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D J5A60_07415 ABC transporter permease K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D J5A60_07410 ABC transporter ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D J5A60_05365 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D J5A60_05360 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D J5A60_05355 modC; molybdenum ABC transporter ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D J5A60_05145 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_06240 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_06380 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_06385 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_07820 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_05140 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D J5A60_06390 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D J5A60_07840 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D J5A60_05135 ATP-binding cassette domain-containing protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D J5A60_06395 fbpC; ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D J5A60_07845 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D J5A60_05940 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein D J5A60_05935 thiP; thiamine/thiamine pyrophosphate ABC transporter permease ThiP K02063 thiP; thiamine transport system permease protein D J5A60_05930 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D J5A60_03045 extracellular solute-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D J5A60_08525 extracellular solute-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D J5A60_03050 potC; spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein D J5A60_03055 potB; spermidine/putrescine ABC transporter permease PotB K11071 potB; spermidine/putrescine transport system permease protein D J5A60_03060 potA; spermidine/putrescine ABC transporter ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D J5A60_02260 mlaC; phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein D J5A60_02265 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D J5A60_02270 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D J5A60_02255 lipid asymmetry maintenance protein MlaB K07122 mlaB; phospholipid transport system transporter-binding protein D J5A60_02275 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D J5A60_02740 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein D J5A60_02730 mglC; galactose/methyl galactoside ABC transporter permease MglC K10541 mglC; methyl-galactoside transport system permease protein D J5A60_02735 mglA; galactose/methyl galactoside ABC transporter ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D J5A60_02395 transporter substrate-binding domain-containing protein K09997 artI; arginine transport system substrate-binding protein D J5A60_02405 artM; arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein D J5A60_02400 artQ; arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein D J5A60_02390 artP; arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D J5A60_08545 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D J5A60_08550 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D J5A60_08555 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D J5A60_00530 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D J5A60_00535 ABC transporter permease K02072 metI; D-methionine transport system permease protein D J5A60_00540 metN; methionine ABC transporter ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D J5A60_03510 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein D J5A60_03505 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein D J5A60_03500 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein D J5A60_03495 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein D J5A60_03490 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein D J5A60_02605 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB K23181 fecB; ferric citrate transport system substrate-binding protein D J5A60_02595 fecD; Fe(3+) dicitrate ABC transporter permease subunit FecD K23182 fecD; ferric citrate transport system permease protein D J5A60_02600 fecC; iron-dicitrate ABC transporter permease FecC K23183 fecC; ferric citrate transport system permease protein D J5A60_02590 fecE; Fe(3+) dicitrate ABC transporter ATP-binding protein FecE K23184 fecE; ferric citrate transport system ATP-binding protein [EC:7.2.2.18] D J5A60_06725 znuA; zinc ABC transporter substrate-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein D J5A60_06050 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein D J5A60_06045 znuC; zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D J5A60_03180 afeA; iron ABC transporter substrate-binding protein AfeA K11604 sitA; manganese/iron transport system substrate-binding protein D J5A60_03170 metal ABC transporter permease K11605 sitC; manganese/iron transport system permease protein D J5A60_03165 metal ABC transporter permease K11606 sitD; manganese/iron transport system permease protein D J5A60_03175 afeB; ironABC transporter ATP-binding protein AfeB K11607 sitB; manganese/iron transport system ATP-binding protein D J5A60_06120 cbiM; cobalt transporter CbiM K02007 cbiM; cobalt/nickel transport system permease protein D J5A60_06115 energy-coupling factor transporter transmembrane protein EcfT K02008 cbiQ; cobalt/nickel transport system permease protein D J5A60_06110 energy-coupling factor ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D J5A60_06130 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein D J5A60_06125 carboxypeptidase regulatory-like domain-containing protein K16915 cbiL; nickel transport protein D J5A60_05250 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein D J5A60_05260 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D J5A60_05255 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D J5A60_02055 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D J5A60_02050 heme ABC transporter permease K02195 ccmC; heme exporter protein C D J5A60_02045 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D J5A60_02040 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D J5A60_06065 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D J5A60_06060 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D J5A60_02290 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D J5A60_07940 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D J5A60_07945 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D J5A60_04130 msbA; lipid A ABC transporter ATP-binding protein/permease MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D J5A60_00880 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D J5A60_03655 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D J5A60_03660 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D J5A60_04405 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D J5A60_01445 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:agj02060] D J5A60_03580 ptsH; phosphocarrier protein Hpr K02784 ptsH; phosphocarrier protein HPr D J5A60_03590 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D J5A60_03445 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D J5A60_05920 PTS transporter subunit EIIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D J5A60_03195 PTS transporter subunit EIIC K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D J5A60_06460 PTS sucrose transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D J5A60_08435 fruB; fused PTS fructose transporter subunit IIA/HPr protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D J5A60_08425 PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D J5A60_08430 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D J5A60_02295 ptsN; PTS IIA-like nitrogen regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:agj03070] D J5A60_06435 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D J5A60_06440 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D J5A60_08410 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D J5A60_02635 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D J5A60_00810 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D J5A60_06430 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D J5A60_07020 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D J5A60_08115 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D J5A60_07950 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D J5A60_00030 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D J5A60_01375 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D J5A60_00330 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D J5A60_00325 tatB; Sec-independent protein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D J5A60_00320 tatC; Sec-independent protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D J5A60_09255 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1 D J5A60_09385 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1 D J5A60_09250 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2 D J5A60_09380 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2 D J5A60_09370 type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5 D J5A60_09500 type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5 D J5A60_09350 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D J5A60_09480 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D J5A60_09360 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6 D J5A60_09490 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6 D J5A60_09355 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8 D J5A60_09485 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8 D J5A60_09345 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10 D J5A60_09475 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10 D J5A60_09245 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D J5A60_09375 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D J5A60_09340 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D J5A60_09470 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:agj02020] D J5A60_03765 porin K09476 ompF; outer membrane pore protein F D J5A60_08310 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D J5A60_05990 qseC; two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D J5A60_05995 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D J5A60_02725 response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D J5A60_06690 arcA; two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D J5A60_07040 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D J5A60_00040 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D J5A60_03030 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D J5A60_08660 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D J5A60_07680 narL; two-component system response regulator NarL K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D J5A60_02580 frdA; fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D J5A60_02575 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D J5A60_02570 frdC; fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C D J5A60_02565 frdD; fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D D J5A60_08265 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D J5A60_05620 glnD; bifunctional uridylyltransferase/uridylyl-removing protein GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D J5A60_01600 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D J5A60_02215 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D J5A60_04820 hybO; hydrogenase 2 small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D J5A60_04835 hybC; hydrogenase 2 large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D J5A60_01190 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D J5A60_06560 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D J5A60_06555 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D J5A60_07990 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D J5A60_01260 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:agj02024] D J5A60_00205 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D J5A60_03535 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D J5A60_04795 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D J5A60_04800 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D J5A60_05245 aroG; 3-deoxy-7-phosphoheptulonate synthase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D J5A60_05990 qseC; two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D J5A60_05995 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D J5A60_04105 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D J5A60_04100 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D J5A60_04095 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D J5A60_04090 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D J5A60_01760 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_03725 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_01190 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D J5A60_03610 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D J5A60_05385 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D J5A60_03605 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D J5A60_07020 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D J5A60_08410 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D J5A60_02635 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D J5A60_00810 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D J5A60_06430 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D J5A60_08115 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D J5A60_07950 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D J5A60_00030 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D J5A60_01375 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D J5A60_02740 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein C 02040 Flagellar assembly [PATH:agj02040] D J5A60_08545 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D J5A60_07250 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D J5A60_08230 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D J5A60_05265 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:agj01501] D J5A60_03765 porin K09476 ompF; outer membrane pore protein F D J5A60_05800 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D J5A60_07125 nagZ; beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D J5A60_01285 TetR/AcrR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D J5A60_01290 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D J5A60_01295 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D J5A60_01175 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D J5A60_01700 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D J5A60_02435 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:agj01502] D J5A60_02475 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D J5A60_05235 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D J5A60_02445 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D J5A60_02450 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D J5A60_02465 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:agj01503] D J5A60_02945 YeiH family putative sulfate export transporter K19239 sapZ; predicted membrane protein D J5A60_03510 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein D J5A60_03505 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein D J5A60_03500 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein D J5A60_03495 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein D J5A60_03490 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein D J5A60_08310 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D J5A60_03550 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D J5A60_06140 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D J5A60_08455 DsbA family protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D J5A60_01290 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D J5A60_01295 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D J5A60_01505 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:agj01000] C 01001 Protein kinases [BR:agj01001] D J5A60_06250 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D J5A60_05990 qseC; two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D J5A60_02725 response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D J5A60_08660 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:agj01009] D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D J5A60_02510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D J5A60_07455 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:agj01002] D J5A60_07405 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D J5A60_06975 prepilin peptidase K02506 hofD; leader peptidase HopD [EC:3.4.23.43] D J5A60_04840 HyaD/HybD family hydrogenase maturation endopeptidase K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D J5A60_05765 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D J5A60_03825 C40 family peptidase K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D J5A60_04750 C40 family peptidase K13695 nlpC; probable lipoprotein NlpC D J5A60_04175 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D J5A60_08345 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D J5A60_03095 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB D J5A60_04700 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D J5A60_03595 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D J5A60_06070 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D J5A60_02780 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D J5A60_02525 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D J5A60_03065 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D J5A60_08685 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D J5A60_06040 mepM; murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D J5A60_05625 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D J5A60_07605 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D J5A60_05070 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D J5A60_04770 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D J5A60_01480 rseP; sigma E protease regulator RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D J5A60_03325 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D J5A60_03420 Do family serine endopeptidase K04772 degQ; serine protease DegQ [EC:3.4.21.-] D J5A60_05380 degS; outer membrane-stress sensor serine endopeptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-] D J5A60_00290 autotransporter outer membrane beta-barrel domain-containing protein K01347 iga; IgA-specific serine endopeptidase [EC:3.4.21.72] D J5A60_02205 hypothetical protein K01347 iga; IgA-specific serine endopeptidase [EC:3.4.21.72] D J5A60_01715 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D J5A60_04620 D-alanyl-D-alanine carboxypeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D J5A60_04200 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D J5A60_06865 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D J5A60_07330 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D J5A60_05025 Lon protease family protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D J5A60_01365 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D J5A60_07080 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D J5A60_03090 prc; carboxy terminal-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D J5A60_03990 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-] D J5A60_04310 sohB; protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-] D J5A60_04950 pepE; dipeptidase PepE K05995 pepE; dipeptidase E [EC:3.4.13.21] D J5A60_07270 rhomboid family intramembrane serine protease K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D J5A60_00420 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D J5A60_06405 yegQ; tRNA 5-hydroxyuridine modification protein YegQ K08303 prtC; U32 family peptidase [EC:3.4.-.-] D J5A60_06915 pmbA; metalloprotease PmbA K03592 pmbA; PmbA protein D J5A60_02935 tldD; metalloprotease TldD K03568 tldD; TldD protein D J5A60_02940 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin D J5A60_02155 hflC; protease modulator HflC K04087 hflC; modulator of FtsH protease HflC D J5A60_02160 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:agj01003] D J5A60_04585 glgA; glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21] D J5A60_02655 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D J5A60_02950 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D J5A60_05640 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D J5A60_01175 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D J5A60_05575 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:agj01005] D J5A60_01505 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D J5A60_01510 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D J5A60_02495 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D J5A60_01495 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D J5A60_07170 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D J5A60_04125 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D J5A60_05510 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D J5A60_03335 lpxM; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D J5A60_00850 waaA; lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D J5A60_00860 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D J5A60_03820 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D J5A60_04115 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D J5A60_04790 HAD family hydrolase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D J5A60_04785 KpsF/GutQ family sugar isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D J5A60_00845 glycosyltransferase family 2 protein K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-] D J5A60_08615 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D J5A60_00865 glycosyltransferase family 9 protein K12982 opsX; heptosyltransferase I [EC:2.4.-.-] D J5A60_02380 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D J5A60_00545 gmhB; D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D J5A60_05505 hldE; bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D J5A60_08610 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D J5A60_05575 wecA; UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:agj01011] D J5A60_02245 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D J5A60_08665 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D J5A60_02470 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D J5A60_02455 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D J5A60_02440 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D J5A60_02475 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D J5A60_05235 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D J5A60_02355 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D J5A60_02450 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D J5A60_02465 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D J5A60_07440 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D J5A60_01175 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D J5A60_05640 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D J5A60_02950 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D J5A60_01700 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D J5A60_02435 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D J5A60_01715 serine hydrolase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D J5A60_04200 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D J5A60_04620 D-alanyl-D-alanine carboxypeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D J5A60_02655 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D J5A60_03095 L,D-transpeptidase family protein K21470 ycbB; L,D-transpeptidase YcbB D J5A60_03325 mepA; penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D J5A60_03825 C40 family peptidase K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D J5A60_06040 mepM; murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D J5A60_02665 transglycosylase SLT domain-containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D J5A60_06735 mltA; murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D J5A60_03950 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D J5A60_07780 mltC; membrane-bound lytic murein transglycosylase MltC K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D J5A60_02005 mltF; membrane-bound lytic murein transglycosylase MltF K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D J5A60_01590 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D J5A60_01710 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D J5A60_03550 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D J5A60_06955 ampD; 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:agj01004] D J5A60_01660 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D J5A60_01025 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D J5A60_01655 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D J5A60_00995 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_00970 beta-ketoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_02720 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D J5A60_00985 beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D J5A60_00980 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_01665 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D J5A60_05020 fabA; bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D J5A60_01500 fabZ; 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D J5A60_06175 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D J5A60_06205 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D J5A60_03645 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D J5A60_02675 yciA; acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D J5A60_01760 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_03725 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_01370 plsB; glycerol-3-phosphate 1-O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D J5A60_01650 plsX; phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D J5A60_02015 plsY; glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D J5A60_07165 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:agj01006] D J5A60_04345 ispA; (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D J5A60_06660 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D J5A60_01470 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D J5A60_03540 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D J5A60_06895 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] C 01007 Amino acid related enzymes [BR:agj01007] D J5A60_01810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D J5A60_04415 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D J5A60_05295 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D J5A60_09110 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D J5A60_01735 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D J5A60_03795 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D J5A60_02795 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D J5A60_07430 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D J5A60_06255 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D J5A60_08140 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D J5A60_06165 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D J5A60_06605 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D J5A60_04910 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D J5A60_07365 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D J5A60_00275 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D J5A60_00310 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D J5A60_03035 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D J5A60_00090 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D J5A60_04320 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D J5A60_08270 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D J5A60_04765 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D J5A60_04760 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D J5A60_04715 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D J5A60_01980 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D J5A60_06320 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D J5A60_01620 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D J5A60_01615 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D J5A60_05580 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D J5A60_05405 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D J5A60_06315 serC; 3-phosphoserine/phosphohydroxythreonine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:agj00194] D J5A60_09190 atpC; F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D J5A60_09195 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D J5A60_09200 atpG; F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D J5A60_09205 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D J5A60_09210 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D J5A60_09215 atpF; F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D J5A60_09220 atpE; F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D J5A60_09225 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D J5A60_09230 ATP synthase subunit I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:agj03000] D J5A60_07835 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D J5A60_00355 cupin domain-containing protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D J5A60_00875 cupin domain-containing protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D J5A60_05400 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D J5A60_07505 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D J5A60_03220 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D J5A60_08595 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D J5A60_04010 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D J5A60_07265 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D J5A60_02745 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D J5A60_05110 cra; catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D J5A60_05125 purR; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D J5A60_05325 gntR; gluconate operon transcriptional repressor GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D J5A60_03210 UTRA domain-containing protein K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D J5A60_01985 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D J5A60_01285 TetR/AcrR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D J5A60_01200 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D J5A60_08600 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D J5A60_00665 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D J5A60_03010 lrp; leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D J5A60_06885 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D J5A60_03285 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D J5A60_01190 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D J5A60_04670 FNR family transcription factor K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D J5A60_02835 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D J5A60_05740 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D J5A60_01930 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D J5A60_02660 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D J5A60_08790 helix-turn-helix domain-containing protein K07724 ner; Ner family transcriptional regulator D J5A60_08085 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D J5A60_06245 helix-turn-helix domain-containing protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D J5A60_05370 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein D J5A60_08250 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D J5A60_02560 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D J5A60_07760 BolA/IbaG family iron-sulfur metabolism protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D J5A60_05415 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D J5A60_03465 ROK family protein K02565 nagC; N-acetylglucosamine repressor D J5A60_04905 ROK family protein K15545 mlc; transcriptional regulator of PTS gene D J5A60_07420 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D J5A60_03525 sigma 54-interacting transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D J5A60_08165 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D J5A60_08240 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D J5A60_04140 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D J5A60_05390 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D J5A60_02420 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:agj03021] D J5A60_00835 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D J5A60_08380 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D J5A60_08375 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D J5A60_02335 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D J5A60_07250 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D J5A60_00105 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D J5A60_08680 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D J5A60_00190 rapA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D J5A60_03890 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D J5A60_05220 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D J5A60_08405 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D J5A60_04920 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D J5A60_04915 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B D J5A60_00110 sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA D J5A60_00115 rseB; sigma-E factor regulatory protein RseB K03598 rseB; sigma-E factor negative regulatory protein RseB D J5A60_00120 SoxR reducing system RseC family protein K03803 rseC; sigma-E factor negative regulatory protein RseC D J5A60_04140 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D J5A60_04205 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D J5A60_07545 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D J5A60_01680 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:agj03019] D J5A60_06820 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D J5A60_02875 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D J5A60_07075 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D J5A60_07565 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D J5A60_03570 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D J5A60_01685 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D J5A60_06925 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D J5A60_08730 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D J5A60_08230 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D J5A60_06935 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D J5A60_01680 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D J5A60_07115 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D J5A60_03785 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D J5A60_00610 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D J5A60_03535 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D J5A60_04145 pcnB; polynucleotide adenylyltransferase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D J5A60_01820 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D J5A60_08265 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator D J5A60_06900 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A D J5A60_08010 rraB; ribonuclease E inhibitor RraB K09893 rraB; regulator of ribonuclease activity B D J5A60_02300 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ D J5A60_05820 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:agj03011] D J5A60_03245 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D J5A60_07900 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D J5A60_00740 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D J5A60_00830 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D J5A60_00795 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D J5A60_01360 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D J5A60_07525 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D J5A60_00780 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D J5A60_04980 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D J5A60_00705 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D J5A60_00825 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D J5A60_07520 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D J5A60_00820 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D J5A60_00775 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D J5A60_01960 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D J5A60_07600 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D J5A60_00755 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D J5A60_01350 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D J5A60_00730 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D J5A60_07445 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D J5A60_07240 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D J5A60_08395 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D J5A60_00725 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D J5A60_00710 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D J5A60_00715 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D J5A60_00770 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D J5A60_00785 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D J5A60_01345 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D J5A60_08390 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D J5A60_08400 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D J5A60_08385 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D J5A60_04985 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D J5A60_00760 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D J5A60_00805 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D J5A60_00745 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D J5A60_00840 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D J5A60_00790 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D J5A60_07585 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D J5A60_04335 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D J5A60_06665 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D J5A60_00735 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D J5A60_00720 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D J5A60_00765 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D J5A60_06670 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D J5A60_01220 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D J5A60_00750 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D J5A60_00800 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D J5A60_01245 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D J5A60_06700 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D J5A60_01645 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D J5A60_01225 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D J5A60_07035 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D J5A60_04330 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D J5A60_00815 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D J5A60_06695 ykgO; type B 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D J5A60_04600 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D J5A60_02375 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_08040 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_05710 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_05535 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00575 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00570 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00165 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00550 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_08055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_02360 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_05730 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_05555 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_00150 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_00160 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_05715 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_08045 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_00565 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_02370 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_05540 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:agj03009] D J5A60_07075 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D J5A60_03570 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D J5A60_07070 era; GTPase Era K03595 era; GTPase D J5A60_06680 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D J5A60_04140 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D J5A60_03890 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D J5A60_05220 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D J5A60_08405 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D J5A60_02030 rsuA; 16S rRNA pseudouridine(516) synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D J5A60_08155 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D J5A60_08025 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D J5A60_06465 rsmC; 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D J5A60_07955 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D J5A60_08245 rsmE; 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D J5A60_09235 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D J5A60_02425 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D J5A60_04280 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D J5A60_08470 class I SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D J5A60_07570 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D J5A60_05075 rlmE; 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D J5A60_01695 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D J5A60_01180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D J5A60_02545 rlmKL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D J5A60_05395 rlmM; 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D J5A60_07385 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D J5A60_07915 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D J5A60_07120 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D J5A60_00195 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D J5A60_04385 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D J5A60_04005 rluB; 23S rRNA pseudouridine(2605) synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D J5A60_06810 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D J5A60_07635 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D J5A60_00065 rRNA large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D J5A60_01100 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D J5A60_06475 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D J5A60_06290 RimK family alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D J5A60_07595 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D J5A60_07985 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D J5A60_03430 YcaO-like family protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D J5A60_01920 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D J5A60_03130 prmB; 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D J5A60_02310 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D J5A60_06820 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D J5A60_02875 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D J5A60_08235 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D J5A60_06925 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D J5A60_00175 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D J5A60_03575 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D J5A60_06350 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D J5A60_03530 hflX; GTPase HflX K03665 hflX; GTPase D J5A60_07490 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D J5A60_02340 spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D J5A60_03900 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D J5A60_03885 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D J5A60_01690 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D J5A60_06845 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D J5A60_04210 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein D J5A60_06910 ribosome-associated protein K09889 yjgA; ribosome-associated protein D J5A60_07000 raiA; ribosome-associated translation inhibitor RaiA K05809 raiA; ribosome-associated inhibitor A D J5A60_07470 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D J5A60_01640 yceD; 23S rRNA accumulation protein YceD K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:agj03016] D J5A60_01090 ribonuclease T K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] D J5A60_02975 multifunctional CCA addition/repair protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D J5A60_01810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D J5A60_00090 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D J5A60_07430 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D J5A60_08140 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D J5A60_02795 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D J5A60_04415 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D J5A60_03795 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D J5A60_06165 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D J5A60_06605 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D J5A60_08270 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D J5A60_04910 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D J5A60_04320 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D J5A60_03035 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D J5A60_01735 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D J5A60_06255 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D J5A60_07365 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D J5A60_04765 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D J5A60_04760 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D J5A60_05295 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D J5A60_09110 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D J5A60_08320 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D J5A60_07135 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D J5A60_07795 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D J5A60_06890 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D J5A60_04975 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D J5A60_03905 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D J5A60_09140 truD; tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D J5A60_02830 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D J5A60_07490 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D J5A60_03540 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D J5A60_07015 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D J5A60_09240 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D J5A60_05275 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3] D J5A60_00375 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D J5A60_07030 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D J5A60_04780 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D J5A60_06630 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D J5A60_07865 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D J5A60_06210 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D J5A60_03730 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D J5A60_04465 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D J5A60_03395 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA D J5A60_00275 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D J5A60_00310 glyS; glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D J5A60_04225 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D J5A60_01840 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D J5A60_00675 dusA; tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D J5A60_01925 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D J5A60_07850 dusC; tRNA dihydrouridine(16) synthase DusC K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D J5A60_06645 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D J5A60_06610 cmoA; carboxy-S-adenosyl-L-methionine synthase CmoA K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D J5A60_02865 cmoB; tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D J5A60_08465 trmA; tRNA (uridine(54)-C5)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D J5A60_07590 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D J5A60_01100 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D J5A60_02840 trmJ; tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D J5A60_00525 trmL; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D J5A60_00180 tRNA1(Val) (adenine(37)-N6)-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D J5A60_05045 truC; tRNA pseudouridine(65) synthase TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D J5A60_00195 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D J5A60_04385 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D J5A60_07710 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D J5A60_04745 ttcA; tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D J5A60_08075 tusA; sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D J5A60_06425 sulfurtransferase TusA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D J5A60_08560 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D J5A60_08565 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C D J5A60_08570 tusD; sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D J5A60_03185 TusE/DsrC/DsvC family sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D J5A60_02820 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D J5A60_07875 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D J5A60_02715 mnmC; bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D J5A60_06410 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D J5A60_05060 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D J5A60_06650 epoxyqueuosine reductase QueH K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D J5A60_06415 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D J5A60_04955 thiI; tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D J5A60_05780 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D J5A60_06840 tRNA(Met) cytidine acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D J5A60_03715 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D J5A60_07235 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D J5A60_03555 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D J5A60_06730 tcdA; tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D J5A60_07565 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D J5A60_06935 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:agj03012] D J5A60_03270 yciH; stress response translation initiation inhibitor YciH K03113 EIF1; translation initiation factor 1 D J5A60_03895 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D J5A60_04325 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D J5A60_08760 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D J5A60_07905 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D J5A60_07535 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D J5A60_08695 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D J5A60_07530 fusA; elongation factor G K02355 fusA; elongation factor G D J5A60_00080 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D J5A60_03810 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D J5A60_01460 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D J5A60_03815 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D J5A60_07465 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D J5A60_02775 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D J5A60_07180 efp; elongation factor P K02356 efp; elongation factor P D J5A60_02585 epmA; elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D J5A60_07185 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D J5A60_05065 elongation factor P hydroxylase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-] D J5A60_06160 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D J5A60_05965 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D J5A60_07980 ribosome alternative rescue factor ArfA K09890 arfA; alternative ribosome-rescue factor C 03110 Chaperones and folding catalysts [BR:agj03110] D J5A60_08180 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D J5A60_06870 clpX; ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D J5A60_00425 hslU; HslU--HslV peptidase ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D J5A60_02510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D J5A60_03785 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D J5A60_02810 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D J5A60_00610 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D J5A60_03770 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D J5A60_07855 djlA; co-chaperone DjlA K05801 djlA; DnaJ like chaperone protein D J5A60_02815 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D J5A60_00335 hslO; Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33 D J5A60_02700 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D J5A60_00340 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D J5A60_00615 co-chaperone GroES K04078 groES; chaperonin GroES D J5A60_05070 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D J5A60_09225 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D J5A60_00030 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D J5A60_07805 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A D J5A60_05795 hypA; hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D J5A60_06105 hypB; hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D J5A60_01740 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D J5A60_07335 ppiD; peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D J5A60_08580 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D J5A60_01605 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D J5A60_06215 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D J5A60_08000 slyD; peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D J5A60_08160 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D J5A60_06805 trxA; thioredoxin K03671 TXN; thioredoxin D J5A60_03670 co-chaperone YbbN K05838 ybbN; putative thioredoxin D J5A60_06300 GrxA family glutaredoxin K03674 grxA; glutaredoxin 1 D J5A60_05835 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D J5A60_06140 thiol:disulfide interchange protein DsbA/DsbL K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D J5A60_08455 DsbA family protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D J5A60_01995 dsbB; disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D J5A60_06150 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D J5A60_06710 protein-disulfide reductase DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D J5A60_02070 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE D J5A60_02110 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:agj04131] D J5A60_02785 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D J5A60_02325 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D J5A60_00440 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D J5A60_04895 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D J5A60_02510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:agj03051] D J5A60_02510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:agj03032] D J5A60_06330 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D J5A60_07835 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D J5A60_08355 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D J5A60_04755 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D J5A60_03250 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D J5A60_07040 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D J5A60_05240 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D J5A60_07245 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D J5A60_01115 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_01765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D J5A60_07045 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D J5A60_06270 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D J5A60_08130 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D J5A60_01580 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D J5A60_06335 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D J5A60_03345 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D J5A60_06470 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D J5A60_01515 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D J5A60_00255 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D J5A60_07220 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D J5A60_01140 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D J5A60_03305 seqA; replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication D J5A60_07350 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D J5A60_03280 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D J5A60_08725 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D J5A60_03370 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D J5A60_03375 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D J5A60_04680 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D J5A60_02630 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:agj03036] D J5A60_07835 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D J5A60_07075 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D J5A60_05085 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D J5A60_08355 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D J5A60_04755 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D J5A60_03250 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D J5A60_07040 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D J5A60_04265 SIS domain-containing protein K12961 diaA; DnaA initiator-associating protein D J5A60_06225 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D J5A60_01930 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D J5A60_03535 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D J5A60_03010 lrp; leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D J5A60_08300 yejK; nucleoid-associated protein YejK K06899 ndpA; nucleoid-associated protein D J5A60_04635 mukB; chromosome partition protein MukB K03632 mukB; chromosome partition protein MukB D J5A60_04630 mukE; chromosome partition protein MukE K03804 mukE; chromosome partition protein MukE D J5A60_04625 mukF; chromosome partition protein MukF K03633 mukF; chromosome partition protein MukF D J5A60_02485 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D J5A60_09125 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB D J5A60_07945 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D J5A60_02435 ftsI; peptidoglycan glycosyltransferase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D J5A60_03015 DNA translocase FtsK 4TM domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D J5A60_02430 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D J5A60_01280 ftsN; cell division protein FtsN K03591 ftsN; cell division protein FtsN D J5A60_02480 cell division protein FtsQ/DivIB K03589 ftsQ; cell division protein FtsQ D J5A60_02460 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D J5A60_07940 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D J5A60_02490 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D J5A60_07215 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D J5A60_07615 cell division protein ZapA K09888 zapA; cell division protein ZapA D J5A60_00010 zapB; cell division protein ZapB K09892 zapB; cell division protein ZapB D J5A60_03550 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D J5A60_01290 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D J5A60_03870 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D J5A60_01200 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D J5A60_03305 seqA; replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication D J5A60_07560 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D J5A60_07555 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D J5A60_07550 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D J5A60_01705 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D J5A60_09320 AAA family ATPase K03496 parA; chromosome partitioning protein D J5A60_09450 AAA family ATPase K03496 parA; chromosome partitioning protein D J5A60_03370 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D J5A60_03375 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D J5A60_09240 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D J5A60_09235 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D J5A60_00890 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D J5A60_02145 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D J5A60_02790 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D J5A60_09310 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D J5A60_09440 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D J5A60_00515 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:agj03400] D J5A60_02230 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D J5A60_07095 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D J5A60_07790 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D J5A60_05455 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D J5A60_08120 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D J5A60_01205 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D J5A60_08510 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D J5A60_01230 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D J5A60_03955 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D J5A60_06145 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D J5A60_07220 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D J5A60_00255 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D J5A60_01110 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D J5A60_03415 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D J5A60_04110 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D J5A60_05310 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D J5A60_08380 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D J5A60_08375 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D J5A60_00835 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D J5A60_02335 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D J5A60_06830 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D J5A60_00170 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D J5A60_03545 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D J5A60_02225 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D J5A60_04650 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D J5A60_02305 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D J5A60_04350 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D J5A60_01765 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D J5A60_07045 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D J5A60_06270 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D J5A60_08130 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D J5A60_01580 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D J5A60_06335 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D J5A60_03345 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D J5A60_06470 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D J5A60_01115 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_01140 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D J5A60_07825 vsr; DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D J5A60_05000 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D J5A60_06480 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D J5A60_04995 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D J5A60_08755 recA; recombinase RecA K03553 recA; recombination protein RecA D J5A60_06575 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D J5A60_06570 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D J5A60_06580 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D J5A60_01275 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D J5A60_01355 priB; primosomal replication protein N K02686 priB; primosomal replication protein N D J5A60_06640 primosomal replication protein K04067 priC; primosomal replication protein N'' D J5A60_03000 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D J5A60_07050 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D J5A60_02345 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D J5A60_07910 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D J5A60_02625 recR; recombination protein RecR K06187 recR; recombination protein RecR D J5A60_02690 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D J5A60_02130 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC D J5A60_08340 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D J5A60_03280 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D J5A60_08725 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D J5A60_04680 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D J5A60_08355 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D J5A60_01930 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D J5A60_04755 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D J5A60_03250 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D J5A60_08730 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D J5A60_05085 H-NS histone family protein K03746 hns; DNA-binding protein H-NS D J5A60_03845 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D J5A60_01365 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D J5A60_08750 recX; recombination regulator RecX K03565 recX; regulatory protein D J5A60_00240 rep; DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D J5A60_03710 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D J5A60_05175 nrdA; ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D J5A60_05185 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:agj03029] D J5A60_03895 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D J5A60_04325 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D J5A60_07905 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D J5A60_07535 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D J5A60_08695 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D J5A60_07530 fusA; elongation factor G K02355 fusA; elongation factor G D J5A60_07070 era; GTPase Era K03595 era; GTPase D J5A60_05295 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D J5A60_08140 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D J5A60_06605 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D J5A60_03795 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D J5A60_01115 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09260 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_09390 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D J5A60_01485 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D J5A60_03785 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D J5A60_02700 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D J5A60_00610 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D J5A60_00615 co-chaperone GroES K04078 groES; chaperonin GroES D J5A60_03770 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D J5A60_02830 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D J5A60_02815 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D J5A60_05835 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin D J5A60_02790 apbC; iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning D J5A60_07020 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D J5A60_02510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:agj02000] D J5A60_04130 msbA; lipid A ABC transporter ATP-binding protein/permease MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D J5A60_00880 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D J5A60_03655 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D J5A60_03660 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D J5A60_00045 ABC transporter ATP-binding protein/permease K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D J5A60_00050 cydC; thiol reductant ABC exporter subunit CydC K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D J5A60_04405 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D J5A60_01445 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D J5A60_05465 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D J5A60_05365 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D J5A60_05360 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D J5A60_05355 modC; molybdenum ABC transporter ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D J5A60_05145 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_06240 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_06380 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_06385 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_07820 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D J5A60_05140 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D J5A60_06390 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D J5A60_07840 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D J5A60_05135 ATP-binding cassette domain-containing protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D J5A60_06395 fbpC; ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D J5A60_07845 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D J5A60_05940 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein D J5A60_05935 thiP; thiamine/thiamine pyrophosphate ABC transporter permease ThiP K02063 thiP; thiamine transport system permease protein D J5A60_05930 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D J5A60_03045 extracellular solute-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D J5A60_08525 extracellular solute-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D J5A60_03050 potC; spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein D J5A60_03055 potB; spermidine/putrescine ABC transporter permease PotB K11071 potB; spermidine/putrescine transport system permease protein D J5A60_03060 potA; spermidine/putrescine ABC transporter ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D J5A60_04105 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D J5A60_04100 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D J5A60_04095 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D J5A60_04090 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D J5A60_07425 ABC transporter substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D J5A60_07415 ABC transporter permease K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D J5A60_07410 ABC transporter ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D J5A60_02740 mglB; galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein D J5A60_02730 mglC; galactose/methyl galactoside ABC transporter permease MglC K10541 mglC; methyl-galactoside transport system permease protein D J5A60_02735 mglA; galactose/methyl galactoside ABC transporter ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D J5A60_02265 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D J5A60_02270 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D J5A60_02275 mlaF; phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D J5A60_02260 mlaC; phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein D J5A60_02255 lipid asymmetry maintenance protein MlaB K07122 mlaB; phospholipid transport system transporter-binding protein D J5A60_02395 transporter substrate-binding domain-containing protein K09997 artI; arginine transport system substrate-binding protein D J5A60_02405 artM; arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein D J5A60_02400 artQ; arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein D J5A60_02390 artP; arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D J5A60_08545 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D J5A60_08550 amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein D J5A60_08555 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D J5A60_00530 MetQ/NlpA family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D J5A60_00535 ABC transporter permease K02072 metI; D-methionine transport system permease protein D J5A60_00540 metN; methionine ABC transporter ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein D J5A60_09085 cysteine ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D J5A60_09095 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D J5A60_09100 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D J5A60_09090 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D J5A60_03510 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein D J5A60_03505 ABC transporter permease subunit K19227 sapB; cationic peptide transport system permease protein D J5A60_03500 ABC transporter permease subunit K19228 sapC; cationic peptide transport system permease protein D J5A60_03495 ATP-binding cassette domain-containing protein K19229 sapD; cationic peptide transport system ATP-binding protein D J5A60_03490 ATP-binding cassette domain-containing protein K19230 sapF; cationic peptide transport system ATP-binding protein D J5A60_03605 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D J5A60_02605 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB K23181 fecB; ferric citrate transport system substrate-binding protein D J5A60_02595 fecD; Fe(3+) dicitrate ABC transporter permease subunit FecD K23182 fecD; ferric citrate transport system permease protein D J5A60_02600 fecC; iron-dicitrate ABC transporter permease FecC K23183 fecC; ferric citrate transport system permease protein D J5A60_02590 fecE; Fe(3+) dicitrate ABC transporter ATP-binding protein FecE K23184 fecE; ferric citrate transport system ATP-binding protein [EC:7.2.2.18] D J5A60_06020 siderophore ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D J5A60_06030 iron chelate uptake ABC transporter family permease subunit K25283 yclO; iron-siderophore transport system permease protein D J5A60_06025 iron chelate uptake ABC transporter family permease subunit K25284 yclN; iron-siderophore transport system permease protein D J5A60_06035 ATP-binding cassette domain-containing protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D J5A60_04730 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D J5A60_04070 helical backbone metal receptor K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D J5A60_04720 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D J5A60_04080 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D J5A60_04725 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D J5A60_04085 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D J5A60_06725 znuA; zinc ABC transporter substrate-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein D J5A60_06050 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein D J5A60_06045 znuC; zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D J5A60_03180 afeA; iron ABC transporter substrate-binding protein AfeA K11604 sitA; manganese/iron transport system substrate-binding protein D J5A60_03170 metal ABC transporter permease K11605 sitC; manganese/iron transport system permease protein D J5A60_03165 metal ABC transporter permease K11606 sitD; manganese/iron transport system permease protein D J5A60_03175 afeB; ironABC transporter ATP-binding protein AfeB K11607 sitB; manganese/iron transport system ATP-binding protein D J5A60_06115 energy-coupling factor transporter transmembrane protein EcfT K02008 cbiQ; cobalt/nickel transport system permease protein D J5A60_06120 cbiM; cobalt transporter CbiM K02007 cbiM; cobalt/nickel transport system permease protein D J5A60_06110 energy-coupling factor ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D J5A60_06130 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein D J5A60_06125 carboxypeptidase regulatory-like domain-containing protein K16915 cbiL; nickel transport protein D J5A60_06065 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D J5A60_06060 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D J5A60_02290 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D J5A60_05250 lolE; lipoprotein-releasing ABC transporter permease subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein D J5A60_05260 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein D J5A60_05255 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D J5A60_02055 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D J5A60_02050 heme ABC transporter permease K02195 ccmC; heme exporter protein C D J5A60_02045 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D J5A60_02040 ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D J5A60_07940 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D J5A60_07945 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D J5A60_01005 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D J5A60_01010 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D J5A60_05685 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D J5A60_05690 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D J5A60_05695 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D J5A60_05190 DASS family sodium-coupled anion symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D J5A60_06905 DASS family sodium-coupled anion symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D J5A60_04220 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D J5A60_02140 3-phenylpropionate MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D J5A60_07575 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D J5A60_05800 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D J5A60_02035 Bcr/CflA family multidrug efflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D J5A60_06360 sugar transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein D J5A60_06235 MFS transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D J5A60_03580 ptsH; phosphocarrier protein Hpr K02784 ptsH; phosphocarrier protein HPr D J5A60_08435 fruB; fused PTS fructose transporter subunit IIA/HPr protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D J5A60_03590 crr; PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D J5A60_03445 PTS transporter subunit EIIC K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D J5A60_05920 PTS transporter subunit EIIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D J5A60_03195 PTS transporter subunit EIIC K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D J5A60_06460 PTS sucrose transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D J5A60_08425 PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D J5A60_02295 ptsN; PTS IIA-like nitrogen regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D J5A60_04290 aquaporin K02440 glpF; glycerol uptake facilitator D J5A60_04920 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A D J5A60_03190 Bax inhibitor-1 family protein K19416 yccA; modulator of FtsH protease D J5A60_07140 focA; formate transporter FocA K06212 focA; formate transporter D J5A60_06945 formate/nitrite transporter family protein K21993 fdhC; formate transporter D J5A60_08015 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D J5A60_03315 mscK; mechanosensitive channel MscK K05802 mscK; potassium-dependent mechanosensitive channel D J5A60_01390 exbB; TonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB D J5A60_01395 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD D J5A60_06540 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D J5A60_06535 tolR; colicin uptake protein TolR K03560 tolR; biopolymer transport protein TolR D J5A60_01305 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter D J5A60_01070 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D J5A60_01385 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D J5A60_01565 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D J5A60_03765 porin K09476 ompF; outer membrane pore protein F D J5A60_05855 ompA; porin OmpA K03286 TC.OOP; OmpA-OmpF porin, OOP family D J5A60_02235 outer membrane protein transport protein K06076 fadL; long-chain fatty acid transport protein D J5A60_00290 autotransporter outer membrane beta-barrel domain-containing protein K01347 iga; IgA-specific serine endopeptidase [EC:3.4.21.72] D J5A60_02205 hypothetical protein K01347 iga; IgA-specific serine endopeptidase [EC:3.4.21.72] D J5A60_04065 TonB-dependent receptor K16092 btuB; vitamin B12 transporter D J5A60_07645 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D J5A60_02705 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D J5A60_06620 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D J5A60_07260 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D J5A60_02710 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D J5A60_02520 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D J5A60_01485 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D J5A60_02190 bamC; outer membrane protein assembly factor BamC K07287 bamC; outer membrane protein assembly factor BamC D J5A60_07630 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D J5A60_08305 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE D J5A60_07685 outer membrane protein assembly factor K07278 tamA; translocation and assembly module TamA D J5A60_07690 translocation/assembly module TamB K09800 tamB; translocation and assembly module TamB D J5A60_02285 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D J5A60_02280 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D J5A60_08505 lptD; LPS assembly protein LptD K04744 lptD; LPS-assembly protein D J5A60_08135 hypothetical protein K03643 lptE; LPS-assembly lipoprotein D J5A60_02765 corC; CNNM family magnesium/cobalt transport protein CorC K06189 corC; hemolysin (HlyC) family protein D J5A60_05480 CidA/LrgA family protein K06518 cidA; holin-like protein D J5A60_07935 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D J5A60_07110 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF D J5A60_01295 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D J5A60_00095 multidrug efflux SMR transporter K03297 emrE; small multidrug resistance pump D J5A60_02320 EamA family transporter K08978 TC.BAT1; bacterial/archaeal transporter family protein D J5A60_07500 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD D J5A60_06635 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter D J5A60_05315 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D J5A60_00040 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D J5A60_03030 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D J5A60_05650 lactate permease LctP family transporter K03303 lutP; lactate permease D J5A60_08675 tehA; dicarboxylate transporter/tellurite-resistance protein TehA K03304 tehA; tellurite resistance protein D J5A60_01915 panF; sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D J5A60_02555 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter D J5A60_02870 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter D J5A60_03835 sstT; serine/threonine transporter SstT K07862 sstT; serine/threonine transporter D J5A60_08315 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D J5A60_02650 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D J5A60_01990 nhaB; Na(+)/H(+) antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family D J5A60_05090 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D J5A60_07895 cation:proton antiporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D J5A60_08065 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein D J5A60_08020 trkA; Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein D J5A60_04550 codB; cytosine permease K10974 codB; cytosine permease D J5A60_07345 NCS2 family protein K02824 uraA; uracil permease D J5A60_05750 purine permease K16346 xanQ; xanthine permease XanQ D J5A60_05010 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D J5A60_05785 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D J5A60_06305 tyrosine transporter K03834 tyrP; tyrosine-specific transport protein D J5A60_08095 tyrosine transporter K03834 tyrP; tyrosine-specific transport protein D J5A60_01415 mtr; tryptophan permease K03835 mtr; tryptophan-specific transport protein D J5A60_00680 chloride channel protein K03281 clcA; chloride channel protein, CIC family D J5A60_07320 dauA; C4-dicarboxylic acid transporter DauA K03321 TC.SULP; sulfate permease, SulP family D J5A60_05905 sialic acid TRAP transporter substrate-binding protein SiaP K21395 yiaO; TRAP-type transport system periplasmic protein D J5A60_05755 dcuC; anaerobic C4-dicarboxylate transporter DcuC K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family D J5A60_07440 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D J5A60_08415 AEC family transporter K24180 mleP; malate permease and related proteins D J5A60_05205 LysE family transporter K05835 rhtC; threonine efflux protein D J5A60_03225 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D J5A60_03230 branched-chain amino acid transporter permease K26606 azlD; branched chain amino acid efflux pump D J5A60_07965 AI-2E family transporter K03548 perM; putative permease D J5A60_07650 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter K09125 yhhQ; queuosine precursor transporter D J5A60_08765 MarC family protein K05595 marC; multiple antibiotic resistance protein D J5A60_02460 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D J5A60_05670 FTR1 family iron permease K07243 FTR; high-affinity iron transporter D J5A60_05675 iron transporter K07230 p19; periplasmic iron binding protein D J5A60_03405 zevB; zinc transporter permease subunit ZevB K08970 rcnA; nickel/cobalt transporter (NicO) family protein D J5A60_01400 energy transducer TonB K03832 tonB; periplasmic protein TonB D J5A60_06520 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein D J5A60_06530 tolA; cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein D J5A60_06525 tolB; Tol-Pal system protein TolB K03641 tolB; TolB protein D J5A60_04875 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D J5A60_04870 oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D J5A60_04865 oxaloacetate decarboxylase subunit gamma K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D J5A60_04245 sulfite exporter TauE/SafE family protein K06196 ccdA; cytochrome c-type biogenesis protein D J5A60_06230 EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit K03543 emrA; membrane fusion protein, multidrug efflux system D J5A60_01290 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D J5A60_04410 efflux RND transporter periplasmic adaptor subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D J5A60_00185 nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D J5A60_02065 heme lyase CcmF/NrfE family subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF D J5A60_00070 MgtC/SapB family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:agj02044] D J5A60_07380 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D J5A60_06500 prepilin-type N-terminal cleavage/methylation domain-containing protein K02679 ppdA; prepilin peptidase dependent protein A D J5A60_06495 type II secretion system protein J K02680 ppdB; prepilin peptidase dependent protein B D J5A60_06485 DUF5374 domain-containing protein K02681 ppdC; prepilin peptidase dependent protein C D J5A60_06960 prepilin-type N-terminal cleavage/methylation domain-containing protein K02682 ppdD; prepilin peptidase dependent protein D D J5A60_06965 type II/IV secretion system protein K02504 hofB; protein transport protein HofB D J5A60_06970 type II secretion system F family protein K02505 hofC; protein transport protein HofC D J5A60_01150 pilQ; type IV pilus secretin PilQ K02507 hofQ; protein transport protein HofQ D J5A60_01310 YggT family protein K02221 yggT; YggT family protein D J5A60_07285 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA D J5A60_08175 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA D J5A60_04135 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D J5A60_09255 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1 D J5A60_09385 lytic transglycosylase domain-containing protein K03194 virB1; type IV secretion system protein VirB1 D J5A60_09250 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2 D J5A60_09380 TrbC/VirB2 family protein K03197 virB2; type IV secretion system protein VirB2 D J5A60_09245 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D J5A60_09375 VirB4 family type IV secretion/conjugal transfer ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D J5A60_09370 type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5 D J5A60_09500 type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5 D J5A60_09360 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6 D J5A60_09490 type IV secretion system protein K03201 virB6; type IV secretion system protein VirB6 D J5A60_09355 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8 D J5A60_09485 type IV secretion system protein K03203 virB8; type IV secretion system protein VirB8 D J5A60_09350 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D J5A60_09480 virB9; P-type conjugative transfer protein VirB9 K03204 virB9; type IV secretion system protein VirB9 D J5A60_09345 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10 D J5A60_09475 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10 D J5A60_09340 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D J5A60_09470 virB11; P-type DNA transfer ATPase VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D J5A60_06150 dsbC; bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D J5A60_00290 autotransporter outer membrane beta-barrel domain-containing protein K01347 iga; IgA-specific serine endopeptidase [EC:3.4.21.72] D J5A60_02205 hypothetical protein K01347 iga; IgA-specific serine endopeptidase [EC:3.4.21.72] D J5A60_08115 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D J5A60_00030 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D J5A60_06435 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D J5A60_08410 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D J5A60_06440 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D J5A60_02635 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D J5A60_00810 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D J5A60_01375 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D J5A60_07950 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D J5A60_06430 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D J5A60_07020 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D J5A60_00330 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D J5A60_00325 tatB; Sec-independent protein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D J5A60_00320 tatC; Sec-independent protein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:agj02042] D J5A60_01385 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D J5A60_01565 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:agj02022] D J5A60_08310 response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D J5A60_05990 qseC; two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3] D J5A60_05995 response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB D J5A60_02725 response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D J5A60_06690 arcA; two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D J5A60_08660 narQ; nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D J5A60_07680 narL; two-component system response regulator NarL K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP C 02035 Bacterial motility proteins [BR:agj02035] D J5A60_08545 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein D J5A60_07380 pilW; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:agj04812] D J5A60_07560 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D J5A60_02490 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D J5A60_02485 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D J5A60_03870 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D J5A60_09320 AAA family ATPase K03496 parA; chromosome partitioning protein D J5A60_09450 AAA family ATPase K03496 parA; chromosome partitioning protein C 04147 Exosome [BR:agj04147] D J5A60_02510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D J5A60_08230 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D J5A60_02325 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D J5A60_01085 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D J5A60_04895 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D J5A60_00610 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D J5A60_03785 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D J5A60_05230 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D J5A60_05745 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D J5A60_07535 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D J5A60_08695 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D J5A60_07135 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D J5A60_01760 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_03725 fadD; long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D J5A60_05805 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D J5A60_03340 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D J5A60_01780 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D J5A60_05985 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D J5A60_06750 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D J5A60_02755 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D J5A60_04570 glgB; 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D J5A60_04285 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D J5A60_02215 glnA; glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D J5A60_00315 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D J5A60_07310 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D J5A60_06455 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D J5A60_04035 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D J5A60_00380 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D J5A60_01865 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D J5A60_00440 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:agj02048] D J5A60_05170 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D J5A60_05150 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D J5A60_01140 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D J5A60_07835 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D J5A60_04640 restriction endonuclease K07448 mrr; restriction system protein D J5A60_09305 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J D J5A60_09400 type II toxin-antitoxin system RelB/DinJ family antitoxin K07473 dinJ; DNA-damage-inducible protein J D J5A60_06250 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D J5A60_06245 helix-turn-helix domain-containing protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D J5A60_02490 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D J5A60_07560 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D J5A60_03370 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D J5A60_03375 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D J5A60_01810 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D J5A60_00100 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB D J5A60_02830 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:agj01504] D J5A60_05090 Na+/H+ antiporter NhaC family protein K18218 tet35; tetracycline resistance efflux pump D J5A60_04040 CatB-related O-acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D J5A60_01290 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D J5A60_01295 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump D J5A60_06885 MerR family DNA-binding protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D J5A60_03765 porin K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:agj03100] D J5A60_01815 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_00560 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_05545 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_05720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D J5A60_05570 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_00230 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_00225 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_00595 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D J5A60_07770 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D J5A60_03410 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D J5A60_00580 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D J5A60_06340 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D J5A60_06345 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D J5A60_06785 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D J5A60_03480 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D J5A60_03485 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D J5A60_00155 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D J5A60_08050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D J5A60_02365 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D J5A60_08705 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_03560 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_03565 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_06790 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_03750 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D J5A60_05565 tRNA-His K14226 tRNA-His; tRNA His D J5A60_00555 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D J5A60_05550 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D J5A60_05725 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D J5A60_02640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_05485 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_03745 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_06780 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_03475 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D J5A60_03740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_06505 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_06510 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_06515 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D J5A60_03470 tRNA-Met K14230 tRNA-Met; tRNA Met D J5A60_06740 tRNA-Met K14230 tRNA-Met; tRNA Met D J5A60_03880 tRNA-Met K14230 tRNA-Met; tRNA Met D J5A60_07255 tRNA-Ile K14230 tRNA-Met; tRNA Met D J5A60_07775 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D J5A60_00600 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D J5A60_05560 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D J5A60_06825 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D J5A60_07325 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D J5A60_00235 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D J5A60_08700 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D J5A60_08715 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D J5A60_00585 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D J5A60_08710 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D J5A60_01800 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_01805 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_01795 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_01790 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_05015 tRNA-Val K14237 tRNA-Val; tRNA Val D J5A60_09165 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D J5A60_00550 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_08055 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_02360 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_05730 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_05555 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_00150 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D J5A60_00160 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_05715 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_08045 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_00565 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_02370 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_05540 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D J5A60_02375 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_08040 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_05710 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_05535 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00575 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00570 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_00165 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D J5A60_03650 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D J5A60_04780 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D J5A60_00140 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D J5A60_01135 NAD(P)H-dependent oxidoreductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D J5A60_04305 FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D J5A60_04250 msrB; peptide-methionine (R)-S-oxide reductase MsrB K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D J5A60_03735 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D J5A60_03380 c-type cytochrome K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D J5A60_02200 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D J5A60_04655 ftnA; non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D J5A60_04660 ftnA; non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D J5A60_07970 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D J5A60_01750 nrdG; anaerobic ribonucleoside-triphosphate reductase-activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D J5A60_07150 pflA; pyruvate formate lyase 1-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D J5A60_04020 tehB; SAM-dependent methyltransferase TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D J5A60_02770 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D J5A60_02925 ModD protein K03813 modD; molybdenum transport protein [EC:2.4.2.-] D J5A60_01830 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D J5A60_07725 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D J5A60_05955 glnE; bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D J5A60_00950 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D J5A60_06545 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D J5A60_04690 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D J5A60_03860 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D J5A60_01575 YchF/TatD family DNA exonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D J5A60_01745 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D J5A60_08535 pyrimidine dimer DNA glycosylase/endonuclease V K01161 E3.1.25.1; deoxyribonuclease (pyrimidine dimer) [EC:3.1.25.1] D J5A60_05490 thermonuclease family protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D J5A60_03300 alpha/beta fold hydrolase K01175 ybfF; esterase [EC:3.1.-.-] D J5A60_08865 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D J5A60_08035 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D J5A60_06265 ASCH domain-containing protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D J5A60_08745 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D J5A60_02995 inorganic triphosphatase K18446 ygiF; triphosphatase [EC:3.6.1.25] D J5A60_05495 cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D J5A60_05915 N-acetylneuraminate epimerase K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24] D J5A60_06745 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D J5A60_03910 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1] D J5A60_05440 rsxD; electron transport complex subunit RsxD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D J5A60_05435 rsxC; electron transport complex subunit RsxC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D J5A60_05430 rsxB; electron transport complex subunit RsxB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D J5A60_07755 Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D J5A60_07750 NADH:ubiquinone reductase (Na(+)-transporting) subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D J5A60_07745 Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D J5A60_07740 NADH:ubiquinone reductase (Na(+)-transporting) subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D J5A60_07735 nqrE; NADH:ubiquinone reductase (Na(+)-transporting) subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D J5A60_07730 nqrF; NADH:ubiquinone reductase (Na(+)-transporting) subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] C 99981 Carbohydrate metabolism D J5A60_05290 sfsA; DNA/RNA nuclease SfsA K06206 sfsA; sugar fermentation stimulation protein A D J5A60_05655 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D J5A60_05660 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D J5A60_05665 lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D J5A60_05330 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D J5A60_02805 fdx; ISC system 2Fe-2S type ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D J5A60_05195 2Fe-2S ferredoxin-like protein K11107 yfaE; ferredoxin D J5A60_05445 rsxG; electron transport complex subunit RsxG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D J5A60_05450 electron transport complex subunit E K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D J5A60_05425 rsxA; electron transport complex subunit RsxA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D J5A60_00005 mioC; FMN-binding protein MioC K06205 mioC; MioC protein D J5A60_02825 iscU; Fe-S cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D J5A60_08650 chaperone NapD K02570 napD; periplasmic nitrate reductase NapD D J5A60_08655 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D J5A60_02105 nrfE; heme lyase NrfEFG subunit NrfE K04016 nrfE; cytochrome c-type biogenesis protein NrfE D J5A60_03290 fldA; flavodoxin FldA K03839 fldA; flavodoxin I D J5A60_08625 NapC/NirT family cytochrome c K02569 napC; cytochrome c-type protein NapC D J5A60_08640 napG; ferredoxin-type protein NapG K02573 napG; ferredoxin-type protein NapG D J5A60_08635 napH; quinol dehydrogenase ferredoxin subunit NapH K02574 napH; ferredoxin-type protein NapH D J5A60_02090 nrfB; cytochrome c nitrite reductase pentaheme subunit K04013 nrfB; cytochrome c-type protein NrfB D J5A60_02095 nrfC; cytochrome c nitrite reductase Fe-S protein K04014 nrfC; protein NrfC D J5A60_02100 nrfD; cytochrome c nitrite reductase subunit NrfD K04015 nrfD; protein NrfD C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D J5A60_07210 cysZ; sulfate transporter CysZ K06203 cysZ; CysZ protein D J5A60_02185 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D J5A60_03255 LapA family protein K08992 lapA; lipopolysaccharide assembly protein A D J5A60_03260 lapB; lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B D J5A60_01240 glycosyltransferase family 25 protein K07270 K07270; glycosyl transferase, family 25 D J5A60_01250 glycosyltransferase family 25 protein K07270 K07270; glycosyl transferase, family 25 D J5A60_03930 glycosyltransferase family 25 protein K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D J5A60_07655 heme biosynthesis protein HemY K02498 hemY; HemY protein D J5A60_00125 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism D J5A60_07160 multicopper oxidase domain-containing protein K04753 sufI; suppressor of ftsI C 99999 Others D J5A60_06715 DoxX family protein K15977 K15977; putative oxidoreductase B B 09192 Unclassified: genetic information processing C 99973 Transcription D J5A60_03005 cold-shock protein K03704 cspA; cold shock protein D J5A60_05035 cspD; cold shock domain-containing protein CspD K03704 cspA; cold shock protein D J5A60_07540 RNA-binding transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D J5A60_02150 tig; trigger factor K03545 tig; trigger factor D J5A60_06010 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D J5A60_06685 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D J5A60_04850 hybG; hydrogenase maturation factor HybG K04653 hypC; hydrogenase expression/formation protein HypC D J5A60_06100 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D J5A60_06095 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D J5A60_06075 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF D J5A60_00510 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein D J5A60_08210 nfuA; Fe-S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA C 99976 Replication and repair D J5A60_01215 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC D J5A60_07480 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC D J5A60_04270 YraN family protein K07460 yraN; putative endonuclease D J5A60_01340 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein D J5A60_03025 replication-associated recombination protein A K07478 ycaJ; putative ATPase D J5A60_07485 topoisomerase DNA-binding C4 zinc finger domain-containing protein K07479 yrdD; putative DNA topoisomerase D J5A60_08775 transposase K07483 K07483; transposase D J5A60_01950 transposase K07491 rayT; REP-associated tyrosine transposase D J5A60_04075 transposase K07491 rayT; REP-associated tyrosine transposase D J5A60_08795 Mu transposase C-terminal domain-containing protein K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D J5A60_03700 rhodanese-like domain-containing protein K03972 pspE; phage shock protein E D J5A60_02620 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D J5A60_02985 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D J5A60_00060 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D J5A60_05460 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D J5A60_06995 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D J5A60_08215 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D J5A60_08485 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D J5A60_05960 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family D J5A60_00640 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D J5A60_04970 DASS family sodium-coupled anion symporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family D J5A60_01450 putative transporter K07085 K07085; putative transport protein C 99978 Cell growth D J5A60_02680 septation protein A K06190 ispZ; intracellular septation protein D J5A60_03385 ytfE; iron-sulfur cluster repair protein YtfE K07322 ytfE; regulator of cell morphogenesis and NO signaling D J5A60_00500 envC; murein hydrolase activator EnvC K22719 envC; murein hydrolase activator C 99993 Cell motility D J5A60_00145 TfoX/Sxy family DNA transformation protein K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D J5A60_03085 proQ; RNA chaperone ProQ K03607 proQ; ProP effector D J5A60_08275 uspA; universal stress protein UspA K06149 uspA; universal stress protein A D J5A60_04675 uspE; universal stress protein UspE K14055 uspE; universal stress protein E D J5A60_02210 typA; translational GTPase TypA K06207 typA; GTP-binding protein D J5A60_06850 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D J5A60_02980 SH3 domain-containing protein K07184 ygiM; SH3 domain protein D J5A60_07450 YtjB family periplasmic protein K07186 smp; membrane protein D J5A60_07460 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D J5A60_03020 lolA; outer membrane lipoprotein chaperone LolA K03634 lolA; outer membrane lipoprotein carrier protein D J5A60_02970 lolB; lipoprotein localization protein LolB K02494 lolB; outer membrane lipoprotein LolB D J5A60_00430 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D J5A60_03805 glycine zipper 2TM domain-containing protein K06077 slyB; outer membrane lipoprotein SlyB D J5A60_01490 OmpH family outer membrane protein K06142 hlpA; outer membrane protein D J5A60_09160 nlpD; murein hydrolase activator NlpD K06194 nlpD; lipoprotein NlpD D J5A60_06930 nlpI; lipoprotein NlpI K05803 nlpI; lipoprotein NlpI D J5A60_07190 oapA; opacity-associated protein OapA K07268 oapA; opacity associated protein D J5A60_03720 Slp family lipoprotein K07285 slp; outer membrane lipoprotein D J5A60_07765 hypothetical protein K07286 yajG; uncharacterized lipoprotein D J5A60_05525 NfeD family protein K07340 ybbJ; inner membrane protein D J5A60_01595 AI-2E family transporter K11744 tqsA; AI-2 transport protein TqsA D J5A60_05735 glycine zipper 2TM domain-containing protein K04062 osmB; osmotically inducible lipoprotein OsmB D J5A60_02060 ccmE; cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D J5A60_02075 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH D J5A60_02115 nrfF; heme lyase NrfEFG subunit NrfF K02200 ccmH; cytochrome c-type biogenesis protein CcmH D J5A60_07375 helix-turn-helix domain-containing protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D J5A60_08735 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY D J5A60_05005 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur B B 09194 Poorly characterized C 99996 General function prediction only D J5A60_04170 CvpA family protein K03558 cvpA; membrane protein required for colicin V production D J5A60_07090 grcA; autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor D J5A60_08530 patatin-like phospholipase family protein K07001 K07001; NTE family protein D J5A60_05630 erpA; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein D J5A60_08325 virulence factor BrkB family protein K07058 K07058; membrane protein D J5A60_00620 fxsA; membrane protein FxsA K07113 fxsA; UPF0716 protein FxsA D J5A60_05500 SufE family protein K02426 sufE; cysteine desulfuration protein SufE D J5A60_07810 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein D J5A60_05850 LemA family protein K03744 lemA; LemA protein D J5A60_08585 SlyX family protein K03745 slyX; SlyX protein D J5A60_07390 SprT family zinc-dependent metalloprotease K02742 sprT; SprT protein D J5A60_05115 YdcF family protein K03748 sanA; SanA protein D J5A60_03080 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D J5A60_03520 TIGR01620 family protein K08990 ycjF; putative membrane protein D J5A60_08330 YchJ family protein K09858 K09858; SEC-C motif domain protein D J5A60_07065 psiE; phosphate-starvation-inducible protein PsiE K13256 psiE; protein PsiE D J5A60_04395 alkylphosphonate utilization protein K06193 phnA; protein PhnA D J5A60_00360 YkgB family protein K21741 rclC; reactive chlorine resistance protein C C 99997 Function unknown D J5A60_05840 YgcG family protein K06872 K06872; uncharacterized protein D J5A60_09000 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W D J5A60_08950 phage tail sheath subtilisin-like domain-containing protein K06907 FI; Bacteriophage tail sheath protein D J5A60_08955 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein D J5A60_03515 YcjX family protein K06918 K06918; uncharacterized protein D J5A60_06990 N-acetyltransferase K06975 K06975; uncharacterized protein D J5A60_06285 alpha/beta hydrolase K07000 K07000; uncharacterized protein D J5A60_08290 DUF3413 domain-containing protein K07014 K07014; uncharacterized protein D J5A60_04515 neutral zinc metallopeptidase K07054 K07054; uncharacterized protein D J5A60_05420 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein D J5A60_01825 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D J5A60_03330 TSUP family transporter K07090 K07090; uncharacterized protein D J5A60_02610 metallophosphoesterase K07098 K07098; uncharacterized protein D J5A60_00590 YtfJ family protein K07109 K07109; uncharacterized protein D J5A60_02850 YedE-related selenium metabolism membrane protein K07112 K07112; uncharacterized protein D J5A60_07885 yedE; selenium metabolism membrane protein YedE/FdhT K07112 K07112; uncharacterized protein D J5A60_04275 penicillin-binding protein activator K07121 K07121; uncharacterized protein D J5A60_03360 sel1 repeat family protein K07126 K07126; uncharacterized protein D J5A60_00635 YitT family protein K07149 K07149; uncharacterized protein D J5A60_07025 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D J5A60_01315 YggU family protein K09131 K09131; uncharacterized protein D J5A60_01720 YbeD family protein K09158 K09158; uncharacterized protein D J5A60_04560 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein D J5A60_00435 YfbU family protein K09161 K09161; uncharacterized protein D J5A60_02670 YciI family protein K09780 K09780; uncharacterized protein D J5A60_00450 DUF808 domain-containing protein K09781 K09781; uncharacterized protein D J5A60_03600 YbaN family protein K09790 K09790; uncharacterized protein D J5A60_04120 Trm112 family protein K09791 K09791; uncharacterized protein D J5A60_07995 YdcH family protein K09794 K09794; uncharacterized protein D J5A60_00505 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein D J5A60_02315 RnfH family protein K09801 K09801; uncharacterized protein D J5A60_06310 DUF496 family protein K09802 K09802; uncharacterized protein D J5A60_00520 VirK/YbjX family protein K09824 virK; uncharacterized protein D J5A60_03235 DUF535 domain-containing protein K09824 virK; uncharacterized protein D J5A60_07720 nqrM; (Na+)-NQR maturation NqrM K05952 K05952; uncharacterized protein D J5A60_07100 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein D J5A60_06985 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein D J5A60_08360 DUF416 family protein K09891 K09891; uncharacterized protein D J5A60_01845 yihI; Der GTPase-activating protein YihI K09894 K09894; uncharacterized protein D J5A60_07610 YecA family protein K09895 K09895; uncharacterized protein D J5A60_08450 YihD family protein K09896 K09896; uncharacterized protein D J5A60_08460 DUF413 domain-containing protein K09897 K09897; uncharacterized protein D J5A60_01195 YheU family protein K09898 K09898; uncharacterized protein D J5A60_04165 DUF412 domain-containing protein K09899 K09899; uncharacterized protein D J5A60_05130 YciU family protein K09901 K09901; uncharacterized protein D J5A60_03875 YcgL domain-containing protein K09902 K09902; uncharacterized protein D J5A60_08295 YejL family protein K09904 K09904; uncharacterized protein D J5A60_03800 VOC family protein K09907 K09907; uncharacterized protein D J5A60_03425 DUF1043 family protein K09908 K09908; uncharacterized protein D J5A60_03155 DUF2057 domain-containing protein K09909 K09909; uncharacterized protein D J5A60_05635 YacL family protein K09910 K09910; uncharacterized protein D J5A60_05030 matP; macrodomain Ter protein MatP K09911 K09911; uncharacterized protein D J5A60_05040 YoaH family protein K09917 K09917; uncharacterized protein D J5A60_02855 DUF484 domain-containing protein K09921 K09921; uncharacterized protein D J5A60_07800 YggL family protein K09923 K09923; uncharacterized protein D J5A60_03440 YegP family protein K09946 K09946; uncharacterized protein D J5A60_02990 TIGR00153 family protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 28, 2024