+E Transcription factors KO
#
Transcription Factors - Aeromonas hydrophila subsp. hydrophila ATCC 7966
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D AHA_1077 modification methylase DdeI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D AHA_1906 araC; arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D AHA_3467 transcriptional regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AHA_3971 putative AraC-family transcriptional regulatory protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D AHA_3992 DNA gyrase inhibitor K13652 K13652; AraC family transcriptional regulator
D AHA_1952 transcriptional activator K13653 K13653; AraC family transcriptional regulator
D AHA_1633 transcriptional regulatory protein K13653 K13653; AraC family transcriptional regulator
D AHA_2398 helix-turn-helix, AraC type K07506 K07506; AraC family transcriptional regulator
D AHA_1277 helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisation K07506 K07506; AraC family transcriptional regulator
D AHA_1993 ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AHA_1046 helix-turn-helix, AraC type:HhH-GPD:Ada, metal-binding:AlkA, N-terminal K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D AHA_1147 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AHA_3731 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AHA_4003 regulatory protein, LysR:LysR, substrate-binding K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AHA_0151 ilvY; transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D AHA_0852 transcriptional regulator, LysR family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D AHA_1955 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D AHA_0677 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D AHA_0073 regulatory protein, LysR:LysR, substrate-binding K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D AHA_3196 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AHA_1513 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AHA_0555 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D AHA_1806 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D AHA_0609 HTH-type transcriptional regulator cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D AHA_1439 dsdC; D-serine deaminase transcriptional activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D AHA_1798 transcriptional regulator, LysR family K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator
D AHA_1950 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D AHA_2090 transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D AHA_1656 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D AHA_1651 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D AHA_0813 glucitol operon repressor K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
C LacI family
D AHA_1561 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHA_2344 malI-2; maltose regulon regulatory protein MalI K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHA_4102 galR; transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHA_2314 transcriptional regulator, lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHA_2349 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D AHA_2977 fructose repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D AHA_3825 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D AHA_0114 ribose operon repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D AHA_0290 HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D AHA_0204 HTH-type transcriptional regulator EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D AHA_1426 malI-1; maltose regulon regulatory protein MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D AHA_0117 transcriptional regulator, GntR family K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D AHA_0376 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D AHA_2443 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D AHA_3864 pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AHA_3778 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D AHA_2912 TetR family regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D AHA_0023 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D AHA_0157 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D AHA_3547 LitR, transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D AHA_1540 transcriptional regulator, TetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AHA_0736 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AHA_3213 probable transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D AHA_0367 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D AHA_4067 asnC; regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D AHA_1864 lrp; leucine responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AHA_3606 Bkd operon transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AHA_3821 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D AHA_1240 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D AHA_3609 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D AHA_4221 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AHA_0842 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D AHA_2710 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D AHA_1100 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D AHA_1530 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AHA_3674 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D AHA_0981 crp; catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D AHA_2303 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D AHA_1746 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D AHA_0662 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D AHA_0250 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D AHA_1723 arsenic operon regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AHA_0678 nodulation protein NolR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D AHA_3946 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D AHA_0409 transcriptional regulator, RpiR family K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D AHA_1350 hexR; transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D AHA_4040 BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AHA_3511 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D AHA_0508 bacterial extracellular solute-binding proteins, family 5 K11925 sgrR; SgrR family transcriptional regulator
D AHA_3000 transcriptional regulator, Cro/CI family K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D AHA_2826 FleQ protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D AHA_1249 acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D AHA_1842 sigma-54 dependent transcriptional regulator K11908 vasH; sigma-54 dependent transcriptional regulator
D AHA_0118 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D AHA_2493 formate hydrogenlyase transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D AHA_0640 carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D AHA_1283 transcriptional protein K07726 K07726; putative transcriptional regulator
D AHA_2022 DNA-binding protein K07726 K07726; putative transcriptional regulator
D AHA_0974 conserved domain protein K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D AHA_0588 metJ; met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D AHA_0776 bifunctional PutA protein: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D AHA_1135 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D AHA_4270 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AHA_0912 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D AHA_0654 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D AHA_4089 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D AHA_1524 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D AHA_2457 Mlc protein K15545 mlc; transcriptional regulator of PTS gene
D AHA_0549 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D AHA_1886 tyrR; transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D AHA_1190 transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D AHA_0895 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D AHA_1877 Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D AHA_1880 phage shock protein C K03973 pspC; phage shock protein C
D AHA_3738 conserved domain protein K03973 pspC; phage shock protein C
D AHA_4004 PTS-dependent dihydroxyacetone kinase operon regulatory protein K05880 dhaR; transcriptional activator for dhaKLM operon
D AHA_2795 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D AHA_3130 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D AHA_3534 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D AHA_4141 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D AHA_2207 DksA-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D AHA_3334 nrdR; transcriptional regulator, NrdR family K07738 nrdR; transcriptional repressor NrdR
D AHA_3422 crl; curlin genes transcriptional activatory protein K11926 crl; sigma factor-binding protein Crl
D AHA_3893 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0