+E Transcription factors KO
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Transcription Factors - Actinoalloteichus hoggarensis
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D AHOG_04895 aplIM1; Modification methylase AplI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AHOG_22200 aplIM2; Modification methylase AplI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AHOG_13130 haeIIIM; Modification methylase HaeIII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D AHOG_03795 marA1; Multiple antibiotic resistance protein MarA K13653 K13653; AraC family transcriptional regulator
D AHOG_16595 tetD; Transposon Tn10 TetD protein K07506 K07506; AraC family transcriptional regulator
D AHOG_07270 alkA; DNA-3-methyladenine glycosylase 2 K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D AHOG_22305 cdhR4; HTH-type transcriptional regulator CdhR K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D AHOG_18500 putative HTH-type transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
C DeoR family
D AHOG_17795 glpR; Glycerol-3-phosphate regulon repressor K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
C LacI family
D AHOG_15850 rbsR2; Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHOG_21435 galR; HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHOG_21455 galS; HTH-type transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHOG_21795 rbsR3; Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AHOG_27860 purR2; HTH-type transcriptional repressor PurR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D AHOG_11400 yvoA2; HTH-type transcriptional repressor YvoA K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D AHOG_01935 dasR; HTH-type transcriptional repressor DasR K24969 dasR; GntR family transcriptional regulator, nutrient-sensing system regulator
D AHOG_08150 yvoA1; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator
D AHOG_17235 yvoA3; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator
D AHOG_11175 lutR2; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AHOG_01830 lutR1; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AHOG_14400 lutR4; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AHOG_23690 gabR2; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AHOG_03900 gabR1; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D AHOG_18285 betI3; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D AHOG_17440 DNA-binding transcriptional repressor AcrR K09017 rutR; TetR/AcrR family transcriptional regulator
D AHOG_04125 ttgR1; HTH-type transcriptional regulator TtgR K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D AHOG_09860 ethR; HTH-type transcriptional regulator EthR K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D AHOG_10770 acnR3; HTH-type transcriptional repressor AcnR K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D AHOG_18680 kstR2; HTH-type transcriptional repressor KstR2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D AHOG_22040 kstR4; HTH-type transcriptional repressor KstR2 K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D AHOG_20245 kstR3; HTH-type transcriptional repressor KstR2 K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
D AHOG_14825 transcriptional regulator BetI K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D AHOG_26660 lrpC3; HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AHOG_12240 lrp3; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AHOG_02370 lrp1; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AHOG_09665 lrp2; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D AHOG_18000 nicR; HTH-type transcriptional repressor NicR K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D AHOG_16155 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D AHOG_13565 ohrR; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D AHOG_12675 adcR; Transcriptional repressor AdcR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D AHOG_09320 soxR1; Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D AHOG_13075 soxR2; Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D AHOG_27160 hspR; Putative heat shock protein HspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D AHOG_25705 MerR family regulatory protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D AHOG_22405 zur; Zinc uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AHOG_01070 furA; Transcriptional regulator FurA K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D AHOG_25760 iclR4; Acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AHOG_21900 allR1; HTH-type transcriptional repressor AllR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AHOG_20370 kdgR3; Pectin degradation repressor protein KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D AHOG_03695 kdgR1; Transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D AHOG_19190 crp2; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D AHOG_01230 crp1; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
D AHOG_17295 sdpR5; Transcriptional repressor SdpR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AHOG_14885 cadC; Cadmium resistance transcriptional regulatory protein CadC K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D AHOG_22400 smtB; HTH-type transcriptional repressor SmtB K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D AHOG_04110 xre; HTH-type transcriptional regulator Xre K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D AHOG_08920 clgR2; Transcriptional regulator ClgR K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
D AHOG_04340 Transcriptional regulator PadR-like family protein K10947 K10947; PadR family transcriptional regulator
D AHOG_14505 lineage-specific thermal regulator protein K10947 K10947; PadR family transcriptional regulator
C Other families
D AHOG_08195 ideR; Iron-dependent repressor IdeR K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D AHOG_24760 birA3; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AHOG_02265 rex; Redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D AHOG_10670 espR; Nucleoid-associated protein EspR K27097 espR; ESX-1-secreted protein regulator
D AHOG_26005 helix-turn-helix protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D AHOG_24335 whiB7; Transcriptional regulator WhiB1 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_24520 whiB8; Transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_21320 whiB5; putative transcriptional regulator WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_17175 whiB4; Transcriptional regulator WhiB1 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_25710 whiB9; putative transcriptional regulator WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_22150 whiB6; Transcriptional regulator WhiB1 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_01160 whiB1; Transcriptional regulator WhiB4 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_14580 whiB3; Transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_26750 whiB10; Transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_04695 whiB2; putative transcriptional regulator WhiB7 K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AHOG_05655 csoR; Copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D AHOG_07195 embR2; Transcriptional regulatory protein EmbR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D AHOG_07240 embR3; Transcriptional regulatory protein EmbR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D AHOG_05450 afsR3; Regulatory protein AfsR K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D AHOG_27970 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AHOG_01665 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D AHOG_19065 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D AHOG_22520 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D AHOG_10310 tenA; Thiaminase-2 K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D AHOG_04390 paaX; Transcriptional repressor PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D AHOG_26315 PspC domain protein K03973 pspC; phage shock protein C
D AHOG_11485 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D AHOG_27895 hypothetical protein K07735 algH; putative transcriptional regulator
D AHOG_08120 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D AHOG_08975 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0