+F Repair protein KO
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DNA Repair and Recombination Proteins - Acinetobacter johnsonii
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RZ95_13560 Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RZ95_05295 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E RZ95_07595 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RZ95_00300 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RZ95_11615 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RZ95_01895 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RZ95_05200 dGTP-pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RZ95_03470 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RZ95_13395 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RZ95_13560 Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RZ95_00630 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RZ95_05295 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RZ95_13185 deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E RZ95_07595 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RZ95_00300 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RZ95_00285 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E RZ95_03330 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RZ95_11615 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RZ95_00620 DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E RZ95_00745 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E RZ95_13830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RZ95_00885 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E RZ95_08645 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E RZ95_19625 ABC transporter K03701 uvrA; excinuclease ABC subunit A
E RZ95_10620 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E RZ95_15430 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E RZ95_14675 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RZ95_13830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RZ95_15565 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RZ95_15560 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RZ95_02115 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RZ95_01595 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RZ95_07970 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E RZ95_05905 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E RZ95_07475 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E RZ95_07170 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RZ95_07165 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E RZ95_05070 DNA exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E RZ95_05930 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RZ95_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RZ95_15840 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E RZ95_02530 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RZ95_07550 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RZ95_11280 DNA polymerase III subunit epsilon K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
E RZ95_07795 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RZ95_14675 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RZ95_00915 recombinase RecB K03111 ssb; single-strand DNA-binding protein
E RZ95_19225 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RZ95_15195 exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E RZ95_15185 exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E RZ95_06405 recombinase RecA K03553 recA; recombination protein RecA
E RZ95_10890 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RZ95_10895 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RZ95_07305 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RZ95_06490 endonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E RZ95_15130 ATP-dependent primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E RZ95_13310 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E RZ95_13305 ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E RZ95_06405 recombinase RecA K03553 recA; recombination protein RecA
E RZ95_04725 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E RZ95_00015 DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF
E RZ95_01905 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RZ95_00745 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E RZ95_10690 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E RZ95_08095 recR; recombination protein RecR K06187 recR; recombination protein RecR
E RZ95_15375 DNA strand exchange inhibitor protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E RZ95_10890 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RZ95_10895 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RZ95_07305 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E RZ95_13310 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E RZ95_13305 ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
E RZ95_01970 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RZ95_04795 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RZ95_00020 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F RZ95_18400 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F RZ95_14710 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F RZ95_08030 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RZ95_00745 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F RZ95_10690 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F RZ95_08095 recR; recombination protein RecR K06187 recR; recombination protein RecR
F RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F RZ95_05965 DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F RZ95_13875 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F RZ95_07625 integration host factor K05788 ihfB; integration host factor subunit beta
E Supressor
F RZ95_00885 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F RZ95_08645 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F RZ95_19625 ABC transporter K03701 uvrA; excinuclease ABC subunit A
F RZ95_10620 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F RZ95_15660 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F RZ95_18095 hypothetical protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D RZ95_16100 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RZ95_08540 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D RZ95_19990 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D RZ95_17820 DNA polymerase K03502 umuC; DNA polymerase V
D RZ95_10200 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D RZ95_07090 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D RZ95_07095 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RZ95_08535 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RZ95_19985 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RZ95_10195 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D RZ95_17815 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D RZ95_06405 recombinase RecA K03553 recA; recombination protein RecA
D RZ95_15375 DNA strand exchange inhibitor protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D RZ95_00915 recombinase RecB K03111 ssb; single-strand DNA-binding protein
D RZ95_06400 RecX family transcriptional regulator K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D RZ95_13400 ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
C Modulation of nucleotide pools
D RZ95_01895 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RZ95_05200 dGTP-pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RZ95_03470 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RZ95_13395 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RZ95_03760 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RZ95_03755 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024