+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acinetobacter johnsonii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RZ95_13560 Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RZ95_05295 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RZ95_07595 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RZ95_00300 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RZ95_11615 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RZ95_01895 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RZ95_05200 dGTP-pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RZ95_03470 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RZ95_13395 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RZ95_13560 Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RZ95_00630 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RZ95_05295 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RZ95_13185 deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E RZ95_07595 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RZ95_00300 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RZ95_00285 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E RZ95_03330 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RZ95_11615 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RZ95_00620 DNA-(apurinic or apyrimidinic site) lyase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RZ95_00745 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RZ95_13830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RZ95_00885 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E RZ95_08645 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E RZ95_19625 ABC transporter K03701 uvrA; excinuclease ABC subunit A E RZ95_10620 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E RZ95_15430 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E RZ95_14675 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RZ95_13830 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RZ95_15565 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RZ95_15560 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RZ95_02115 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RZ95_01595 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RZ95_07970 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RZ95_05905 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RZ95_07475 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RZ95_07170 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RZ95_07165 exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E RZ95_05070 DNA exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E RZ95_05930 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RZ95_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RZ95_15840 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RZ95_02530 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RZ95_07550 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RZ95_11280 DNA polymerase III subunit epsilon K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7] E RZ95_07795 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RZ95_14675 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RZ95_00915 recombinase RecB K03111 ssb; single-strand DNA-binding protein E RZ95_19225 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RZ95_15195 exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E RZ95_15185 exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E RZ95_06405 recombinase RecA K03553 recA; recombination protein RecA E RZ95_10890 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RZ95_10895 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RZ95_07305 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RZ95_06490 endonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E RZ95_15130 ATP-dependent primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E RZ95_13310 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E RZ95_13305 ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E RZ95_06405 recombinase RecA K03553 recA; recombination protein RecA E RZ95_04725 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E RZ95_00015 DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF E RZ95_01905 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RZ95_00745 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RZ95_10690 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E RZ95_08095 recR; recombination protein RecR K06187 recR; recombination protein RecR E RZ95_15375 DNA strand exchange inhibitor protein K03631 recN; DNA repair protein RecN (Recombination protein N) E RZ95_10890 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RZ95_10895 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RZ95_07305 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E RZ95_13310 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E RZ95_13305 ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 E RZ95_01970 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RZ95_04795 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RZ95_00020 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RZ95_18400 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F RZ95_14710 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RZ95_08030 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RZ95_00745 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RZ95_10690 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F RZ95_08095 recR; recombination protein RecR K06187 recR; recombination protein RecR F RZ95_03540 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RZ95_05965 DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F RZ95_13875 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F RZ95_07625 integration host factor K05788 ihfB; integration host factor subunit beta E Supressor F RZ95_00885 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F RZ95_08645 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F RZ95_19625 ABC transporter K03701 uvrA; excinuclease ABC subunit A F RZ95_10620 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F RZ95_15660 DNA-binding protein K03746 hns; DNA-binding protein H-NS F RZ95_18095 hypothetical protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RZ95_16100 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RZ95_08540 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D RZ95_19990 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D RZ95_17820 DNA polymerase K03502 umuC; DNA polymerase V D RZ95_10200 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D RZ95_07090 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D RZ95_07095 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RZ95_08535 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RZ95_19985 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RZ95_10195 LexA family transcriptional regulator K03503 umuD; DNA polymerase V [EC:3.4.21.-] D RZ95_17815 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D RZ95_06405 recombinase RecA K03553 recA; recombination protein RecA D RZ95_15375 DNA strand exchange inhibitor protein K03631 recN; DNA repair protein RecN (Recombination protein N) D RZ95_00915 recombinase RecB K03111 ssb; single-strand DNA-binding protein D RZ95_06400 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D RZ95_13400 ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] C Modulation of nucleotide pools D RZ95_01895 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RZ95_05200 dGTP-pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RZ95_03470 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RZ95_13395 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RZ95_03760 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RZ95_03755 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024