+E Ribosome biogenesis KO
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Ribosome Biogenesis - Amphritea japonica
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D AMJAP_2781 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D AMJAP_1773 RIO kinase 1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D AMJAP_2824 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C AMJAP_2780 era; GTP-binding protein Era K03595 era; GTPase
C AMJAP_3157 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C AMJAP_1915 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C AMJAP_1991 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C AMJAP_3094 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C AMJAP_3117 nusA; utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C AMJAP_0320 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C AMJAP_3211 nusG; transcriptional antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D AMJAP_1023 16S rRNA pseudouridine516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D AMJAP_1578 16S rRNA pseudouridine516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D AMJAP_3105 16S rRNA pseudouridine516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D AMJAP_0646 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AMJAP_0027 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AMJAP_3106 16S rRNA (guanine1207-N2)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D AMJAP_0139 rsmD; 16S rRNA (guanine966-N2)-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D AMJAP_0253 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AMJAP_0935 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AMJAP_3368 gidB; 16S rRNA (guanine527-N7)-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AMJAP_0904 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D AMJAP_0897 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D AMJAP_2720 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D AMJAP_2888 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D AMJAP_2768 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AMJAP_3124 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D AMJAP_1969 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D AMJAP_3037 16S rRNA (guanine1207-N2)-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D AMJAP_0417 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D AMJAP_1947 23S rRNA (cytosine1962-C5)-methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D AMJAP_1996 23S rRNA (cytosine1962-C5)-methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D AMJAP_3227 23S rRNA (cytosine1962-C5)-methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D AMJAP_1318 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D AMJAP_1376 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase/23S rRNA (guanine2069-N7)-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D AMJAP_1847 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D AMJAP_2798 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D AMJAP_1450 rumA; 23S rRNA (uracil1939-C5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AMJAP_0173 tRNA pseudouridine32 synthase/23S rRNA pseudouridine746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AMJAP_1408 tRNA pseudouridine32 synthase/23S rRNA pseudouridine746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AMJAP_1449 tRNA pseudouridine32 synthase/23S rRNA pseudouridine746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AMJAP_0773 rluB; 23S rRNA pseudouridine2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AMJAP_1511 rluC; 23S rRNA pseudouridine955/2504/2580 synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D AMJAP_3134 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AMJAP_1698 rluE; 23S rRNA pseudouridine2457 synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D AMJAP_1081 rluF; 23S rRNA pseudouridine2604 synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C AMJAP_0457 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C AMJAP_0382 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C AMJAP_1103 ribosomal protein S12 methylthiotransferase K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AMJAP_1538 ribosomal protein S12 methylthiotransferase K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C AMJAP_2743 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C AMJAP_1814 prmB; adenine-specific DNA-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C AMJAP_1706 cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C AMJAP_2781 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C AMJAP_1510 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C AMJAP_2702 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C AMJAP_0249 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C AMJAP_0274 dbpA; ATP-independent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C AMJAP_1395 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C AMJAP_1041 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C AMJAP_2780 era; GTP-binding protein Era K03595 era; GTPase
C AMJAP_2559 ribosome biogenesis GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C AMJAP_2825 ribosome biogenesis GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C AMJAP_2792 engA; GTP-binding protein K03977 engA; GTPase
C AMJAP_3157 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C AMJAP_1520 rbgA; ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
C AMJAP_2815 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C AMJAP_0033 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C AMJAP_3306 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AMJAP_3115 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C AMJAP_3118 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C AMJAP_0416 ybeB; ribosome-associated protein K09710 ybeB; ribosome-associated protein
C AMJAP_0442 ybeY; probable rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C AMJAP_3125 yhbY; RNA-binding protein K07574 yhbY; RNA-binding protein
C AMJAP_2700 yjgA; ribosome-associated protein K09889 yjgA; ribosome-associated protein
C AMJAP_1375 ribosome modulation factor K03812 rmf; ribosome modulation factor
C AMJAP_2069 sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C AMJAP_2695 sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C AMJAP_2945 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C AMJAP_1609 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024