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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Acinonyx jubatus (cheetah)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        106972432 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        106971661 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        106977005 DNA-directed RNA polymerase II subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        106980698 DNA-directed RNA polymerase II subunit RPB11-a	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        106966414 DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        106981683 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        106974708 DNA-directed RNA polymerase II subunit RPB9 isoform X1	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        106973765 protein GRINL1A	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
D      Pol I, II, III common subunits
E        106978086 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        106981076 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        106983811 DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        106980060 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        106965311 LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        113596797 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        106983580 transcription initiation factor IIA subunit 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        106977215 TFIIA-alpha and beta-like factor isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        106973798 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        106968045 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        106984326 TATA box-binding protein-like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106976865 TATA box-binding protein-like 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106978655 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106982364 transcription initiation factor TFIID subunit 1 isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        106987380 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        106981328 transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        106969912 transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        106978469 transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        106982873 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        106966958 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        106981684 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        106987428 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        106967448 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        106983527 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        106974051 transcription initiation factor TFIID subunit 8 isoform X3	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        106977075 transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        106986097 transcription initiation factor TFIID subunit 9B	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        106968256 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        106981145 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        106972820 transcription initiation factor TFIID subunit 11 isoform X1	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        106970369 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        106977647 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        106980405 TATA-binding protein-associated factor 2N isoform X1	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        106975424 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        106966554 transcription initiation factor IIE subunit beta isoform X1	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        106975436 general transcription factor IIF subunit 1 isoform X2	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        106972016 general transcription factor IIF subunit 2 isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        106987482 general transcription factor IIH subunit 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        106977079 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        106978344 general transcription factor IIH subunit 3 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        106966622 general transcription factor IIH subunit 4 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        106966379 general transcription and DNA repair factor IIH helicase subunit XPB	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        106973598 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        106982684 general transcription factor IIH subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        106977073 cyclin-dependent kinase 7 isoform X8	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        106974578 CDK-activating kinase assembly factor MAT1 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        106978597 cyclin-H isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        106974460 mediator of RNA polymerase II transcription subunit 6 isoform X1	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        106970213 mediator of RNA polymerase II transcription subunit 8 isoform X1	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        113595994 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        106984447 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        106979558 mediator of RNA polymerase II transcription subunit 19	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        106974054 mediator of RNA polymerase II transcription subunit 20	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        106988274 mediator of RNA polymerase II transcription subunit 22	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        106983880 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        106979632 mediator of RNA polymerase II transcription subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        106975537 mediator of RNA polymerase II transcription subunit 30 isoform X1	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        106980530 mediator of RNA polymerase II transcription subunit 1 isoform X1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        106971999 mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        106967629 mediator of RNA polymerase II transcription subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        106981383 mediator of RNA polymerase II transcription subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        113603670 mediator of RNA polymerase II transcription subunit 10 isoform X1	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        106968792 mediator of RNA polymerase II transcription subunit 21 isoform X2	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        106980123 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        106984216 mediator of RNA polymerase II transcription subunit 14 isoform X1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        106983618 mediator of RNA polymerase II transcription subunit 15 isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        106978104 mediator of RNA polymerase II transcription subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        106968931 cyclin-dependent kinase 19 isoform X2	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        106985553 cyclin-dependent kinase 8 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        106989208 cyclin-C isoform X2	K15161 CCNC; cyclin-C 
E        106982368 mediator of RNA polymerase II transcription subunit 12 isoform X8	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        106975163 mediator of RNA polymerase II transcription subunit 12-like protein isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        106972693 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
E        106971647 mediator of RNA polymerase II transcription subunit 13-like isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        106975457 mediator of RNA polymerase II transcription subunit 23 isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        106980459 mediator of RNA polymerase II transcription subunit 24 isoform X1	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        106983115 mediator of RNA polymerase II transcription subunit 25 isoform X3	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        106985912 mediator of RNA polymerase II transcription subunit 26 isoform X1	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        106985351 mediator of RNA polymerase II transcription subunit 27 isoform X5	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        106981451 histone acetyltransferase KAT2B isoform X4	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        106972603 histone acetyltransferase KAT2A isoform X2	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        106981182 transformation/transcription domain-associated protein isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        106974005 transcription initiation protein SPT3 homolog isoform X2	K11313 SUPT3H; transcription initiation protein SPT3 
E        106980436 transcriptional adapter 2-alpha isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        106982712 transcriptional adapter 2-beta isoform X2	K15127 TADA2B; transcriptional adapter 2-beta 
E        106972357 transcriptional adapter 3 isoform X1	K11315 TADA3; transcriptional adapter 3 
E        106966223 transcriptional adapter 1 isoform X2	K11317 TADA1; transcriptional adapter 1 
E        106987380 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        106969912 transcription initiation factor TFIID subunit 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        106978469 transcription initiation factor TFIID subunit 4B isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        106982873 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        106966958 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        106981684 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        106987428 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        106967448 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        106983527 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        106977075 transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        106986097 transcription initiation factor TFIID subunit 9B	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        106968256 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        106981145 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        106970369 transcription initiation factor TFIID subunit 12 isoform X1	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        106974312 ataxin-7-like protein 3 isoform X1	K11363 SGF11; SAGA-associated factor 11 
E        106966151 SAGA-associated factor 29	K11364 SGF29; SAGA-associated factor 29 
E        106967865 STAGA complex 65 subunit gamma	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        106977754 ataxin-7-like protein 2 isoform X2	K11318 ATXN7; ataxin-7 
E        106968825 ataxin-7 isoform X3	K11318 ATXN7; ataxin-7 
E        106978481 ataxin-7-like protein 1 isoform X1	K11318 ATXN7; ataxin-7 
E        106987375 chromodomain-helicase-DNA-binding protein 1 isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        106973380 transcription and mRNA export factor ENY2 isoform X1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        106988743 ubiquitin carboxyl-terminal hydrolase 51 isoform X1	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        106981377 ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        106983759 splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        106968172 probable global transcription activator SNF2L2 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        106983921 transcription activator BRG1 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        106988297 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        106987204 SWI/SNF complex subunit SMARCC1 isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        106986857 SWI/SNF complex subunit SMARCC2 isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        106969235 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        106969567 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        106978693 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        106979241 LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        106980537 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        106987399 actin, cytoplasmic 2	K05692 ACTB_G1; actin beta/gamma 1 
E        106984514 actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        106973887 actin-like protein 6A isoform X1	K11340 ACTL6A; actin-like protein 6A 
E        106987416 actin-like protein 6B isoform X2	K11652 ACTL6B; actin-like protein 6B 
E        106975722 AT-rich interactive domain-containing protein 1B isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        106977557 AT-rich interactive domain-containing protein 1A isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        106969321 AT-rich interactive domain-containing protein 2 isoform X1	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        106987015 protein polybromo-1 isoform X1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        106988297 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        106988530 activated RNA polymerase II transcriptional coactivator p15	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        106967142 cell division cycle and apoptosis regulator protein 1 isoform X1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
E        106983104 calcium-binding and coiled-coil domain-containing protein 1 isoform X2	K25828 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        106974063 transcription elongation factor A protein 1	K03145 TFIIS; transcription elongation factor S-II 
E        106973715 transcription elongation factor A protein 2 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        106977599 transcription elongation factor A protein 3 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        106989944 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        106979619 transcription elongation factor SPT5 isoform X2	K15172 SUPT5H; transcription elongation factor SPT5 
E        106983246 transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        106969583 transcription termination factor 2 isoform X1	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        106977034 pre-mRNA cleavage complex 2 protein Pcf11 isoform X3	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        106979140 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        106982958 cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        106981209 cleavage and polyadenylation specificity factor subunit 4 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        106978611 putative cleavage and polyadenylation specificity factor subunit 4-like protein isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        106967586 serine/threonine-protein phosphatase PP1-gamma catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        106967920 serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        106971182 serine/threonine-protein phosphatase PP1-alpha catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        106973585 symplekin isoform X1	K06100 SYMPK; symplekin 
E        106985281 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        106988763 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        106984730 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        106983486 decapping and exoribonuclease protein	K14845 RAI1; RAT1-interacting protein 
E        106974503 regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        106984124 regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        106973180 splicing factor, proline- and glutamine-rich isoform X1	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        106976251 SR-related and CTD-associated factor 8 isoform X3	K13191 RBM16; RNA-binding protein 16 
E        106966468 SR-related and CTD-associated factor 4 isoform X1	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        106985346 probable helicase senataxin isoform X1	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        106989308 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        106979631 RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        106979327 parafibromin	K15175 CDC73; parafibromin 
E        106971835 RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        106967245 RNA polymerase-associated protein LEO1 isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        106968569 RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        106978841 negative elongation factor A isoform X1	K15179 WHSC2; negative elongation factor A 
E        106989053 negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        106969941 negative elongation factor C/D isoform X1	K15181 TH1L; negative elongation factor C/D 
E        106983488 negative elongation factor E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        106969184 RNA polymerase II elongation factor ELL2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106968483 RNA polymerase II elongation factor ELL3 isoform X2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106969145 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106986732 RNA polymerase II elongation factor ELL2-like	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106970736 AF4/FMR2 family member 1 isoform X4	K15184 AFF1; AF4/FMR2 family member 1 
E        106970705 AF4/FMR2 family member 4 isoform X1	K15185 AFF4; AF4/FMR2 family member 4 
E        106980226 ELL-associated factor 2 isoform X1	K15186 EAF; ELL-associated factor 
E        106971607 ELL-associated factor 1 isoform X1	K15186 EAF; ELL-associated factor 
E        106975439 protein ENL isoform X1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        106971070 protein AF-9 isoform X1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        106969298 cyclin-T1 isoform X2	K15188 CCNT; cyclin T 
E        106975684 cyclin-T2 isoform X2	K15188 CCNT; cyclin T 
E        106966318 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        106969184 RNA polymerase II elongation factor ELL2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106968483 RNA polymerase II elongation factor ELL3 isoform X2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106969145 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106986732 RNA polymerase II elongation factor ELL2-like	K15183 ELL; RNA polymerase II elongation factor ELL 
E        106985121 little elongation complex subunit 1 isoform X1	K26143 ICE1; little elongation complex subunit 1 
E        106973800 little elongation complex subunit 2 isoform X1	K26144 ICE2; little elongation complex subunit 2 
E        106976026 zinc finger CCCH domain-containing protein 8 isoform X1	K24388 ZC3H8; zinc finger CCCH domain-containing protein 8 
D      Brd4/P-TEFb complex
E        106982901 bromodomain-containing protein 4 isoform X1	K11722 BRD4; bromodomain-containing protein 4 
E        106969298 cyclin-T1 isoform X2	K15188 CCNT; cyclin T 
E        106975684 cyclin-T2 isoform X2	K15188 CCNT; cyclin T 
E        106966318 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        106988143 protein HEXIM1	K15189 HEXIM1_2; protein HEXIM1/2 
E        106988144 LOW QUALITY PROTEIN: protein HEXIM2	K15189 HEXIM1_2; protein HEXIM1/2 
E        106987410 7SK snRNA methylphosphate capping enzyme	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        106966323 la-related protein 7 isoform X1	K15191 LARP7; La-related protein 7 
E        106969298 cyclin-T1 isoform X2	K15188 CCNT; cyclin T 
E        106975684 cyclin-T2 isoform X2	K15188 CCNT; cyclin T 
E        106966318 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
E        106981106 cell cycle and apoptosis regulator protein 2 isoform X1	K25816 CCAR2; cell cycle and apoptosis regulator protein 2 
E        106968105 DBIRD complex subunit ZNF326 isoform X1	K13204 ZNF326; zinc finger protein 326 
D      Others
E        106977521 general transcription factor II-I isoform X1	K03121 TFII-I; transcription initiation factor TFII-I 
E        106977525 general transcription factor II-I repeat domain-containing protein 1 isoform X3	K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 
E        106965815 TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        106968075 protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        106971129 dr1-associated corepressor isoform X1	K21752 DRAP1; Dr1-associated corepressor 
E        106987483 protein SPT2 homolog isoform X1	K15193 SPTY2D1; protein SPT2 
E        106973030 AF4/FMR2 family member 2 isoform X1	K15194 AFF2; AF4/FMR2 family member 2 
E        106968756 AF4/FMR2 family member 3 isoform X7	K15195 AFF3; AF4/FMR2 family member 3 
E        106973136 RNA polymerase II subunit A C-terminal domain phosphatase isoform X2	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        106966688 CTD small phosphatase-like protein isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        106970056 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        106975839 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        106966377 protein IWS1 homolog isoform X1	K17498 SPN1; transcription factor SPN1 
E        106966700 cysteine/serine-rich nuclear protein 1 isoform X1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        106969216 cysteine/serine-rich nuclear protein 2	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        106982892 cysteine/serine-rich nuclear protein 3 isoform X1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        106968567 RNA polymerase II-associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        106968113 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X4	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        106969313 RNA polymerase II-associated protein 3 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        106972198 cyclin-K	K23326 CCNK; cyclin K 
E        106977575 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        106967536 GPN-loop GTPase 3 isoform X1	K24104 GPN; GPN-loop GTPase 
E        106967864 GPN-loop GTPase 1 isoform X2	K24104 GPN; GPN-loop GTPase 
E        106966486 transcription elongation factor A protein-like 1	K26769 TCEAL1; transcription elongation factor A protein-like 1 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        106969692 DNA-directed RNA polymerase III subunit RPC1 isoform X2	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        106971925 DNA-directed RNA polymerase III subunit RPC2 isoform X1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        106974025 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        106985521 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        106986052 DNA-directed RNA polymerase III subunit RPC3 isoform X2	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        106981122 DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        106970461 DNA-directed RNA polymerase III subunit RPC5 isoform X1	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        106967053 DNA-directed RNA polymerase III subunit RPC6 isoform X1	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        106968764 DNA-directed RNA polymerase III subunit RPC7 isoform X1	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        106986061 DNA-directed RNA polymerase III subunit RPC7-like isoform X1	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        106979902 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        106972859 DNA-directed RNA polymerase III subunit RPC9 isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        106977352 DNA-directed RNA polymerase III subunit RPC10	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        106978086 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        106981076 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        106983811 DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        106980060 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        106965311 LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        113596797 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        106985540 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        106984326 TATA box-binding protein-like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106976865 TATA box-binding protein-like 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106978655 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106985948 transcription factor IIIB 90 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        106978385 transcription factor IIIB 50 kDa subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        106977062 transcription factor TFIIIB component B'' homolog isoform X2	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        106966180 general transcription factor 3C polypeptide 1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        106967853 general transcription factor 3C polypeptide 2	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        106979966 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        106985326 general transcription factor 3C polypeptide 4 isoform X1	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        106985324 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        106968901 general transcription factor 3C polypeptide 6 isoform X2	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        106985324 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        106979966 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        106971313 snRNA-activating protein complex subunit 1 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        106970784 snRNA-activating protein complex subunit 2	K15209 SNAPC2; snRNA-activating protein complex subunit 2 
E        106969772 snRNA-activating protein complex subunit 3 isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        106989557 snRNA-activating protein complex subunit 4 isoform X1	K09453 SNAPC4; snRNA-activating protein complex subunit 4 
E        106980674 snRNA-activating protein complex subunit 5 isoform X1	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        106966245 POU domain, class 2, transcription factor 1 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        106987695 POU domain, class 2, transcription factor 2 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        106974763 POU domain, class 2, transcription factor 3 isoform X1	K09364 POU2F; POU domain transcription factor, class 2 
E        106966641 POU domain, class 5, transcription factor 1	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        106979483 zinc finger protein 143 isoform X3	K20828 ZNF143_76; zinc finger protein 143/76 
E        106972817 zinc finger protein 76 isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        106965775 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        106978131 DNA-directed RNA polymerase I subunit RPA1 isoform X1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        106976020 DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        106974025 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        106985521 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        106981309 DNA-directed RNA polymerase I subunit RPA49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        106982403 POLR1F; DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        106973596 POLR1G; DNA-directed RNA polymerase I subunit RPA34	K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34 
E        106984049 POLR1H; DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        106978086 DNA-directed RNA polymerases I, II, and III subunit RPABC1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        106981076 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        106983811 DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        106980060 DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        106965311 LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        113596797 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        106984326 TATA box-binding protein-like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106976865 TATA box-binding protein-like 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106978655 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        106965582 TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        106987068 TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X2	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        106985624 TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
E        106984443 TATA box-binding protein-associated factor RNA polymerase I subunit D	K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D 
C    Other transcription-related factors
D      UBF
E        106974316 nucleolar transcription factor 1 isoform X3	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        106970564 RNA polymerase I-specific transcription initiation factor RRN3 isoform X3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        106989944 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        106979619 transcription elongation factor SPT5 isoform X2	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        106983685 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        106986896 bromodomain adjacent to zinc finger domain protein 2A isoform X1	K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A 
D      CTDK-I complex
D      Transcription termination factors
E        106985354 transcription termination factor 1	K15225 TTF1; transcription termination factor 1 
E        106972609 CAVIN1; caveolae-associated protein 1	K19387 PTRF; polymerase I and transcript release factor 
D      Others
E        106966888 nucleolar and coiled-body phosphoprotein 1 isoform X2	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        106968045 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        106975424 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024