+E Transcription factors KO #

  Transcription Factors - Agrobacterium larrymoorei

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D CFBP5473_13645 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D CFBP5473_20360 helix-turn-helix domain-containing protein K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D CFBP5473_15905 helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D CFBP5473_20925 helix-turn-helix domain-containing protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D CFBP5473_17800 helix-turn-helix domain-containing protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D CFBP5473_13865 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D CFBP5473_17705 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D CFBP5473_02650 methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CFBP5473_11065 ftrA; transcriptional regulator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA C LysR family D CFBP5473_16500 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CFBP5473_05645 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CFBP5473_18820 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CFBP5473_03860 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CFBP5473_21735 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CFBP5473_14230 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CFBP5473_18830 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CFBP5473_15895 pcaQ; pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D CFBP5473_12540 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CFBP5473_11285 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D CFBP5473_10530 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D CFBP5473_20835 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D CFBP5473_24705 nac; nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D CFBP5473_21680 nac; nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein C DeoR family D CFBP5473_15545 DeoR/GlpR transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D CFBP5473_19625 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_08310 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_16275 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_24045 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_24350 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_12700 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_24590 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_21795 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_21885 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_02795 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CFBP5473_17550 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D CFBP5473_22935 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor C GntR family D CFBP5473_00860 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D CFBP5473_00840 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D CFBP5473_16080 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D CFBP5473_16905 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D CFBP5473_19930 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CFBP5473_16705 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CFBP5473_01300 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CFBP5473_01720 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CFBP5473_22415 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CFBP5473_00080 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CFBP5473_15320 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CFBP5473_15975 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator C TetR/AcrR family D CFBP5473_11480 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D CFBP5473_21905 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D CFBP5473_04405 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D CFBP5473_16170 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CFBP5473_02585 TetR/AcrR family transcriptional regulator K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon C Lrp/AsnC family D CFBP5473_18780 winged helix-turn-helix transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CFBP5473_11630 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CFBP5473_23980 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CFBP5473_24000 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CFBP5473_18045 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CFBP5473_06565 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D CFBP5473_12250 LuxR family transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D CFBP5473_01760 LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D CFBP5473_22070 autoinducer-binding protein K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids D CFBP5473_23415 traR; transcriptional regulator TraR K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids D CFBP5473_24010 traR; transcriptional regulator TraR K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids C MarR family D CFBP5473_09970 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D CFBP5473_14515 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D CFBP5473_11375 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D CFBP5473_10855 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D CFBP5473_14185 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CFBP5473_07700 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D CFBP5473_00105 transcriptional repressor K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D CFBP5473_15910 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D CFBP5473_09620 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CFBP5473_04390 cyclic nucleotide-binding domain-containing protein K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB C Rrf2 family D CFBP5473_00800 rirA; iron-responsive transcriptional regulator RirA K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator C ArsR family D CFBP5473_00010 winged helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CFBP5473_21605 winged helix-turn-helix transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D CFBP5473_04000 helix-turn-helix transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D CFBP5473_12620 helix-turn-helix domain-containing protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D CFBP5473_16355 MurR/RpiR family transcriptional regulator K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon D CFBP5473_09160 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CFBP5473_10485 type II toxin-antitoxin system MqsA family antitoxin K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D CFBP5473_22550 helix-turn-helix transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D CFBP5473_24465 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CFBP5473_02520 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D CFBP5473_13000 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator D CFBP5473_05560 DNA-binding transcriptional regulator K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D CFBP5473_18785 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D CFBP5473_12425 ribbon-helix-helix domain-containing protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D CFBP5473_18230 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D CFBP5473_01265 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CFBP5473_12935 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CFBP5473_21080 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CFBP5473_21205 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CFBP5473_22960 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CFBP5473_19195 repB; plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CFBP5473_23245 plasmid partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CFBP5473_01520 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D CFBP5473_11015 transcriptional regulator K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis D CFBP5473_14310 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CFBP5473_20265 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D CFBP5473_13370 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D CFBP5473_11745 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D CFBP5473_08675 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D CFBP5473_20685 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D CFBP5473_05490 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ D CFBP5473_06865 sel1 repeat family protein K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0