+D GENES KO
#
KEGG Orthology (KO) - Algoriphagus sp. NBT04N3
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:algo00010]
D GYM62_01375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_06095 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_12800 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_13540 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D GYM62_20505 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM62_09430 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM62_18035 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GYM62_06825 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_20815 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_00765 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GYM62_16980 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D GYM62_14060 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM62_08920 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GYM62_18325 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM62_01565 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM62_04850 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_04260 zinc-dependent alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_10975 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_05780 aldo/keto reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_16630 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_16705 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM62_01400 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D GYM62_09535 HAD family phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D GYM62_06280 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM62_07410 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D GYM62_06135 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:algo00020]
D GYM62_03575 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GYM62_09015 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_12810 acnA; aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_11380 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_20775 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_20165 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D GYM62_07890 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_20170 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_02410 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM62_08745 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM62_13290 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM62_13285 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM62_13295 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM62_17590 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM62_06135 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D GYM62_18325 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM62_01565 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM62_04850 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:algo00030]
D GYM62_12800 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM62_16620 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GYM62_16625 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D GYM62_03240 lactonase family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D GYM62_16615 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D GYM62_05800 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GYM62_05095 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GYM62_05100 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GYM62_01830 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D GYM62_16745 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D GYM62_18665 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D GYM62_06280 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM62_01670 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D GYM62_06800 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D GYM62_06985 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM62_01390 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D GYM62_06795 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D GYM62_09430 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM62_20505 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_13540 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:algo00040]
D GYM62_08635 uxaC; glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D GYM62_00965 tagaturonate reductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D GYM62_00970 altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D GYM62_08645 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D GYM62_03675 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM62_05780 aldo/keto reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_05800 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GYM62_05710 carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D GYM62_05715 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D GYM62_17245 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141]
D GYM62_15735 aldehyde dehydrogenase (NADP(+)) K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00051 Fructose and mannose metabolism [PATH:algo00051]
D GYM62_07930 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GYM62_17920 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D GYM62_09395 NTP transferase domain-containing protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D GYM62_12770 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D GYM62_09370 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GYM62_09380 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D GYM62_03090 L-rhamnose mutarotase K29028 E5.1.3.29; L-fucose mutarotase [EC:5.1.3.29]
D GYM62_03100 SDR family oxidoreductase K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D GYM62_03105 amidohydrolase family protein K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_13540 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D GYM62_20505 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM62_05715 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D GYM62_09430 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM62_18035 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GYM62_07440 glycoside hydrolase family 32 protein K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80]
D GYM62_16745 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:algo00052]
D GYM62_01400 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D GYM62_07710 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D GYM62_09800 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GYM62_06280 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM62_01375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_06095 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_13540 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D GYM62_09460 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:algo00053]
D GYM62_03675 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM62_05780 aldo/keto reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_06985 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM62_07725 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_17245 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141]
D GYM62_19675 dihydroxy-acid dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25]
D GYM62_15735 aldehyde dehydrogenase (NADP(+)) K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GYM62_12475 mandelate racemase/muconate lactonizing enzyme family protein K18983 gci; D-galactarolactone cycloisomerase [EC:5.5.1.27]
C 00500 Starch and sucrose metabolism [PATH:algo00500]
D GYM62_09460 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D GYM62_04665 alpha-amylase K05341 ams; amylosucrase [EC:2.4.1.4]
D GYM62_11305 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM62_00615 glycoside hydrolase family 5 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D GYM62_09325 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D GYM62_18140 glycogen/starch synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D GYM62_04500 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D GYM62_19120 glgP; alpha-glucan family phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D GYM62_09425 DUF3459 domain-containing protein K01176 AMY; alpha-amylase [EC:3.2.1.1]
D GYM62_20555 polysaccharide deacetylase family protein K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1]
D GYM62_12150 glycoside hydrolase family 97 protein K21574 susB; glucan 1,4-alpha-glucosidase [EC:3.2.1.3]
D GYM62_19605 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
D GYM62_06280 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM62_01375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_06095 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_12800 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM62_07930 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00620 Pyruvate metabolism [PATH:algo00620]
D GYM62_16705 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM62_18325 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM62_01565 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM62_04850 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_04260 zinc-dependent alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_10975 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_05780 aldo/keto reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_16630 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_08920 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GYM62_09775 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM62_09890 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM62_07685 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_09895 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_16045 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_12680 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D GYM62_19110 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D GYM62_19395 VOC family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D GYM62_20745 VOC family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D GYM62_11485 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D GYM62_05845 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D GYM62_11430 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM62_17590 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GYM62_03235 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM62_06135 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_00555 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:algo00630]
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM62_03575 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GYM62_09015 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_12810 acnA; aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_16705 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_04300 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM62_13795 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D GYM62_02545 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_02550 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_19060 catalase K03781 katE; catalase [EC:1.11.1.6]
D GYM62_05845 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D GYM62_04515 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM62_16755 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM62_20590 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D GYM62_04290 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_11445 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D GYM62_18085 TIM barrel protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D GYM62_20875 TIM barrel protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D GYM62_06220 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D GYM62_06800 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D GYM62_16870 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:algo00640]
D GYM62_16705 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM62_13820 dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_09775 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM62_09890 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM62_07685 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_09895 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_16045 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM62_13795 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D GYM62_04300 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM62_02545 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_02550 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_08745 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM62_02410 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM62_09015 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_12810 acnA; aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_08010 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:algo00650]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_05910 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM62_06075 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM62_17470 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GYM62_11385 enoyl-CoA hydratase K01715 crt; short-chain-enoyl-CoA hydratase [EC:4.2.1.150]
D GYM62_13290 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM62_13285 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM62_13295 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM62_01570 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM62_08265 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GYM62_06875 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D GYM62_06870 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D GYM62_00540 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM62_00545 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:algo00660]
D GYM62_00540 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM62_00545 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D GYM62_08745 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM62_02410 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM62_00570 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D GYM62_00560 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D GYM62_00565 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D GYM62_00575 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:algo00562]
D GYM62_16785 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D GYM62_18090 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D GYM62_18035 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00566 Sulfoquinovose metabolism
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:algo00190]
D GYM62_18760 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D GYM62_13290 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM62_13285 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM62_13295 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM62_02340 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GYM62_02345 cytochrome oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D GYM62_02350 cytochrome oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D GYM62_18595 cytochrome C oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D GYM62_02330 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D GYM62_02325 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D GYM62_02335 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM62_02710 ccoN; cytochrome-c oxidase, cbb3-type subunit I K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9]
D GYM62_02715 cbb3-type cytochrome c oxidase subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D GYM62_02720 c-type cytochrome K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D GYM62_20855 c-type cytochrome K08738 CYC; cytochrome c
D GYM62_15760 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D GYM62_14645 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D GYM62_15755 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GYM62_15765 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D GYM62_14640 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GYM62_15780 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GYM62_15770 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GYM62_15775 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D GYM62_02845 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D GYM62_08775 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:algo00710]
D GYM62_00765 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GYM62_06825 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_20815 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_09430 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM62_20505 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM62_05095 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GYM62_05100 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GYM62_16745 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D GYM62_18035 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GYM62_05800 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GYM62_01830 fsa; fructose-6-phosphate aldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D GYM62_03235 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM62_06135 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D GYM62_11430 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:algo00720]
D GYM62_03235 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM62_17590 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GYM62_13290 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GYM62_13285 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GYM62_13295 succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GYM62_02410 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GYM62_08745 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_11380 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_20775 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_09015 aconitate hydratase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_12810 acnA; aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D GYM62_09775 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM62_09890 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM62_07685 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_09895 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_16045 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM62_04300 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM62_02545 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_02550 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_02880 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D GYM62_08285 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D GYM62_16705 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:algo00680]
D GYM62_16755 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM62_14060 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM62_03235 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM62_09430 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GYM62_20505 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_13540 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D GYM62_16705 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM62_16980 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D GYM62_06715 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_09850 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_12485 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_14385 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GYM62_16885 phosphosulfolactate synthase K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19]
D GYM62_04285 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
D GYM62_13805 Ldh family oxidoreductase K05884 comC; L-2-hydroxycarboxylate dehydrogenase (NAD+) [EC:1.1.1.337]
C 00910 Nitrogen metabolism [PATH:algo00910]
D GYM62_12065 nosZ; Sec-dependent nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D GYM62_01365 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GYM62_20100 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GYM62_04515 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM62_18775 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GYM62_18770 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D GYM62_06920 can; carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:algo00920]
D GYM62_19560 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GYM62_19555 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GYM62_18635 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D GYM62_19550 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D GYM62_19565 HEPN domain-containing protein K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D GYM62_08115 NAD(P)/FAD-dependent oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D GYM62_12710 c-type cytochrome K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D GYM62_14045 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GYM62_06910 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D GYM62_13570 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D GYM62_01655 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:algo00061]
D GYM62_09775 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GYM62_09890 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GYM62_07685 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_09895 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GYM62_16045 acetyl-CoA carboxylase carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GYM62_05680 AMP-binding protein K18660 ACSF3; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]
D GYM62_08930 acyl carrier protein K02078 acpP; acyl carrier protein
D GYM62_13320 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GYM62_04835 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GYM62_09880 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GYM62_08935 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GYM62_00095 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19680 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19950 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_02790 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D GYM62_13950 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D GYM62_20200 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D GYM62_08670 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_17460 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:algo00071]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_17480 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D GYM62_17470 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GYM62_05920 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GYM62_08675 acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D GYM62_06005 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_14720 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_08670 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_17460 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_02745 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D GYM62_04260 zinc-dependent alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_10975 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:algo00074]
D GYM62_08930 acyl carrier protein K02078 acpP; acyl carrier protein
D GYM62_13320 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GYM62_20200 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:algo00561]
D GYM62_06220 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_05780 aldo/keto reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_16630 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_19905 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D GYM62_02280 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM62_08385 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM62_10340 alpha/beta hydrolase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
C 00564 Glycerophospholipid metabolism [PATH:algo00564]
D GYM62_20490 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D GYM62_19910 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D GYM62_02280 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM62_08385 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM62_00120 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D GYM62_00655 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D GYM62_20095 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D GYM62_11490 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D GYM62_20105 phosphatidylserine decarboxylase family protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:algo00600]
D GYM62_01230 glycoside hydrolase family 30 protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM62_04950 glucosylceramidase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM62_19455 arylsulfatase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D GYM62_19470 sulfatase-like hydrolase/transferase K01130 atsA; arylsulfatase [EC:3.1.6.1]
D GYM62_12130 exo-alpha-sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D GYM62_06210 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:algo00592]
D GYM62_17480 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:algo01040]
D GYM62_06165 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D GYM62_20200 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D GYM62_13405 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:algo00230]
D GYM62_06280 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM62_01670 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D GYM62_02910 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D GYM62_12785 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D GYM62_12880 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D GYM62_03015 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D GYM62_14705 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D GYM62_16330 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D GYM62_16325 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D GYM62_08220 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D GYM62_11805 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D GYM62_12885 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GYM62_09480 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GYM62_20035 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D GYM62_00265 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D GYM62_18205 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D GYM62_18630 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GYM62_18750 yjjX; inosine/xanthosine triphosphatase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D GYM62_16590 non-canonical purine NTP diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D GYM62_05395 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GYM62_01545 nucleoside deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D GYM62_19640 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D GYM62_20600 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM62_20605 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GYM62_12095 ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D GYM62_17495 dgt; dNTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D GYM62_02650 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D GYM62_13800 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D GYM62_05225 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D GYM62_02665 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D GYM62_06070 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D GYM62_00370 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D GYM62_00270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D GYM62_19560 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GYM62_19555 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:algo00240]
D GYM62_15295 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GYM62_14065 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GYM62_02250 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GYM62_13750 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D GYM62_20575 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D GYM62_15545 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D GYM62_10125 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D GYM62_14595 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D GYM62_14315 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D GYM62_18630 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GYM62_07675 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D GYM62_01775 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D GYM62_00375 (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D GYM62_16585 uridine-cytidine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D GYM62_09480 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GYM62_14565 nucleoside phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D GYM62_00245 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D GYM62_02245 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GYM62_20545 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GYM62_15325 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D GYM62_12095 ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D GYM62_20600 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM62_20605 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GYM62_06070 deoxynucleoside kinase K15519 dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]
D GYM62_06255 dCMP deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D GYM62_16120 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D GYM62_03635 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D GYM62_20195 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GYM62_15535 SDR family NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:algo00250]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_03285 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D GYM62_13205 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D GYM62_03775 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_03790 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_03810 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_17620 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_20770 amidohydrolase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D GYM62_02815 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D GYM62_05155 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D GYM62_06960 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GYM62_06930 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GYM62_02665 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D GYM62_11805 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D GYM62_02250 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GYM62_01570 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM62_18775 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GYM62_18770 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D GYM62_20100 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GYM62_00070 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D GYM62_04515 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM62_15295 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GYM62_14065 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GYM62_12850 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GYM62_18130 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GYM62_02910 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:algo00260]
D GYM62_18340 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20510 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20440 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D GYM62_15280 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM62_20445 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D GYM62_20450 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D GYM62_00125 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D GYM62_10925 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D GYM62_16755 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM62_05845 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D GYM62_06220 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D GYM62_16980 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D GYM62_06715 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_09850 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_12485 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_14385 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GYM62_15535 SDR family NAD(P)-dependent oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D GYM62_05425 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GYM62_07690 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GYM62_04690 flavin monoamine oxidase family protein K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM62_20590 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D GYM62_04290 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_11445 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D GYM62_12510 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3]
D GYM62_11490 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D GYM62_16545 solA; N-methyl-L-tryptophan oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1]
D GYM62_02270 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D GYM62_00230 sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GYM62_05695 sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GYM62_01170 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D GYM62_01165 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:algo00270]
D GYM62_14045 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GYM62_11730 cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GYM62_02270 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D GYM62_08290 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_08295 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_19600 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D GYM62_08680 phosphotransferase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D GYM62_18110 cystathionine gamma-synthase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D GYM62_17515 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D GYM62_06485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_06515 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_11580 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GYM62_18340 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20510 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20440 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D GYM62_15280 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM62_20445 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D GYM62_06910 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D GYM62_13570 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D GYM62_06915 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D GYM62_01655 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D GYM62_02440 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_05700 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_08410 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_14000 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GYM62_00230 sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GYM62_05695 sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GYM62_14040 cysM; cysteine synthase CysM K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D GYM62_06715 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_09850 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_12485 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_14385 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:algo00280]
D GYM62_02440 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_05700 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_08410 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_15895 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D GYM62_13820 dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_05920 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GYM62_17480 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D GYM62_13795 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D GYM62_04300 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D GYM62_02545 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_02550 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_05680 AMP-binding protein K18660 ACSF3; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]
D GYM62_04175 acyl-CoA carboxylase subunit beta K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D GYM62_08265 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GYM62_06875 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D GYM62_06870 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:algo00290]
D GYM62_00570 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D GYM62_00560 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D GYM62_00565 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D GYM62_00575 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D GYM62_00540 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM62_00545 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D GYM62_00550 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GYM62_00535 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GYM62_02440 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_05700 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_08410 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_15895 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D GYM62_00555 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:algo00300]
D GYM62_18340 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20510 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20440 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D GYM62_15280 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM62_10055 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GYM62_01750 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D GYM62_07320 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D GYM62_06950 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GYM62_17290 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D GYM62_08460 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D GYM62_18395 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D GYM62_19985 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GYM62_20360 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D GYM62_18880 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
C 00310 Lysine degradation [PATH:algo00310]
D GYM62_20700 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D GYM62_07890 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_20170 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_06005 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_14720 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_01570 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GYM62_07275 lhgO; L-2-hydroxyglutarate oxidase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:algo00220]
D GYM62_06960 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GYM62_06930 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GYM62_07790 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D GYM62_08415 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D GYM62_12850 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GYM62_04515 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM62_15295 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GYM62_14065 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GYM62_20100 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_06940 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D GYM62_06955 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D GYM62_06950 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GYM62_06935 M20 family metallo-hydrolase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:algo00330]
D GYM62_01630 creatininase family protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D GYM62_05240 creatininase family protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D GYM62_07785 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D GYM62_03000 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D GYM62_02995 carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_04690 flavin monoamine oxidase family protein K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM62_17600 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM62_07790 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D GYM62_13670 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D GYM62_07735 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D GYM62_08430 proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D GYM62_00070 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D GYM62_01210 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D GYM62_01205 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D GYM62_12965 proline iminopeptidase-family hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_12510 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3]
C 00340 Histidine metabolism [PATH:algo00340]
D GYM62_07825 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D GYM62_01200 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D GYM62_01190 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D GYM62_18075 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D GYM62_01185 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D GYM62_01195 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D GYM62_07840 hisB; bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D GYM62_04875 histidinol-phosphate aminotransferase family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_07835 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_07830 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D GYM62_04380 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D GYM62_04370 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D GYM62_04375 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D GYM62_04360 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_04690 flavin monoamine oxidase family protein K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM62_06275 egtD; L-histidine N(alpha)-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:algo00350]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_04875 histidinol-phosphate aminotransferase family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_07835 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_06295 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GYM62_00030 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D GYM62_02950 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D GYM62_17050 aminotransferase class V-fold PLP-dependent enzyme K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_17400 aspartate aminotransferase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_04690 flavin monoamine oxidase family protein K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM62_04260 zinc-dependent alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_10975 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_01570 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:algo00360]
D GYM62_01180 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D GYM62_17050 aminotransferase class V-fold PLP-dependent enzyme K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_17400 aspartate aminotransferase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_04690 flavin monoamine oxidase family protein K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM62_11800 ferredoxin--NADP reductase K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D GYM62_05910 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM62_06075 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_04875 histidinol-phosphate aminotransferase family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_07835 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_06295 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GYM62_15745 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D GYM62_02125 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D GYM62_11165 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D GYM62_17600 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism [PATH:algo00380]
D GYM62_06010 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]
D GYM62_17540 FAD-dependent monooxygenase K00486 KMO; kynurenine 3-monooxygenase [EC:1.14.13.9]
D GYM62_17535 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3]
D GYM62_17530 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
D GYM62_07890 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_20170 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_06005 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_14720 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_17050 aminotransferase class V-fold PLP-dependent enzyme K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_17400 aspartate aminotransferase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_04690 flavin monoamine oxidase family protein K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_19425 alpha-keto acid decarboxylase family protein K04103 ipdC; indolepyruvate decarboxylase [EC:4.1.1.74]
D GYM62_01365 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GYM62_17600 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM62_19060 catalase K03781 katE; catalase [EC:1.11.1.6]
D GYM62_02125 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D GYM62_11165 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:algo00400]
D GYM62_01175 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D GYM62_08445 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D GYM62_19225 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D GYM62_14390 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D GYM62_14460 PQQ-binding-like beta-propeller repeat protein K05358 quiA; quinate dehydrogenase (quinone) [EC:1.1.5.8]
D GYM62_05450 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D GYM62_08450 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D GYM62_18285 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D GYM62_01140 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GYM62_01145 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GYM62_15560 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GYM62_01150 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D GYM62_01160 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D GYM62_01155 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D GYM62_01170 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D GYM62_01165 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D GYM62_08435 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D GYM62_08440 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D GYM62_08465 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D GYM62_08455 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_04875 histidinol-phosphate aminotransferase family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_07835 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_01180 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:algo00410]
D GYM62_18150 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GYM62_18145 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D GYM62_20195 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
C 00430 Taurine and hypotaurine metabolism [PATH:algo00430]
D GYM62_06045 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_06695 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_09790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_02815 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D GYM62_05155 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
C 00440 Phosphonate and phosphinate metabolism
D GYM62_08890 MBL fold metallo-hydrolase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:algo00450]
D GYM62_13570 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D GYM62_11730 cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GYM62_08290 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_08295 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_18110 cystathionine gamma-synthase family protein K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D GYM62_03595 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D GYM62_02505 NAD(P)/FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D GYM62_07200 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D GYM62_19560 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GYM62_19555 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GYM62_00470 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D GYM62_10040 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:algo00460]
D GYM62_11305 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GYM62_01365 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GYM62_06045 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_06695 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_09790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_03285 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D GYM62_13205 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D GYM62_16755 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:algo00470]
D GYM62_16865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GYM62_18880 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D GYM62_14700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM62_12850 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GYM62_19995 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GYM62_18380 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D GYM62_17290 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D GYM62_18395 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D GYM62_12510 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3]
D GYM62_13270 alanine/ornithine racemase family PLP-dependent enzyme K21898 orr; ornithine racemase [EC:5.1.1.12]
D GYM62_15740 4-hydroxyproline epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D GYM62_15730 dihydrodipicolinate synthase family protein K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D GYM62_15735 aldehyde dehydrogenase (NADP(+)) K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GYM62_15745 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:algo00480]
D GYM62_06045 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_06695 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_09790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_08585 lactam utilization protein LamB K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D GYM62_08590 pxpB; 5-oxoprolinase subunit PxpB K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D GYM62_08595 biotin-dependent carboxyltransferase family protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D GYM62_10140 carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D GYM62_08345 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GYM62_14305 M1 family metallopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D GYM62_11380 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_20775 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_16615 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D GYM62_16620 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GYM62_07800 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:algo00520]
D GYM62_16840 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D GYM62_16020 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D GYM62_16435 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GYM62_19670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GYM62_06260 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GYM62_04530 glycoside hydrolase family 18 protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D GYM62_01425 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D GYM62_06210 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D GYM62_01380 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D GYM62_18130 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GYM62_07930 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GYM62_12800 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM62_08660 SDR family oxidoreductase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D GYM62_07725 NAD-dependent epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D GYM62_01375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_06095 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_07410 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D GYM62_06280 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM62_03675 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM62_07710 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D GYM62_09800 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GYM62_17920 glmM; phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D GYM62_09395 NTP transferase domain-containing protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D GYM62_12770 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D GYM62_09325 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D GYM62_07430 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00541 Biosynthesis of various nucleotide sugars [PATH:algo00541]
D GYM62_03740 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D GYM62_12775 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D GYM62_05340 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D GYM62_05335 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D GYM62_04150 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D GYM62_16435 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GYM62_03675 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GYM62_09325 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D GYM62_09320 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D GYM62_09315 rfbH; lipopolysaccharide biosynthesis protein RfbH K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D GYM62_09330 2Fe-2S iron-sulfur cluster binding domain-containing protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D GYM62_07430 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GYM62_07720 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D GYM62_16905 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D GYM62_13470 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D GYM62_03990 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D GYM62_03975 GNAT family N-acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D GYM62_09395 NTP transferase domain-containing protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D GYM62_12770 mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D GYM62_09370 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GYM62_09380 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:algo00511]
D GYM62_12130 exo-alpha-sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D GYM62_06210 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D GYM62_17955 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D GYM62_01635 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase K01444 AGA; N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26]
D GYM62_01230 glycoside hydrolase family 30 protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM62_04950 glucosylceramidase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis [PATH:algo00540]
D GYM62_02785 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GYM62_02790 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D GYM62_02795 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D GYM62_11600 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D GYM62_12530 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D GYM62_04435 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D GYM62_20535 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D GYM62_19655 lysophospholipid acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00550 Peptidoglycan biosynthesis [PATH:algo00550]
D GYM62_19670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GYM62_06260 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GYM62_20010 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GYM62_19995 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GYM62_19985 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GYM62_14700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM62_20360 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D GYM62_18880 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D GYM62_15985 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GYM62_18565 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM62_03545 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM62_19990 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GYM62_20005 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D GYM62_18725 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_15800 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM62_20000 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_16105 rodA; rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_16100 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GYM62_19980 transpeptidase family protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GYM62_05130 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D GYM62_11055 peptidase S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:algo00552]
D GYM62_18565 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM62_03545 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM62_09300 WecB/TagA/CpsF family glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:algo00543]
D GYM62_03725 WecB/TagA/CpsF family glycosyltransferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D GYM62_03890 MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D GYM62_03900 MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D GYM62_14045 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:algo00730]
D GYM62_07080 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_17925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_18895 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D GYM62_03075 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D GYM62_04305 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D GYM62_20540 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D GYM62_00270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:algo00740]
D GYM62_09490 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GYM62_17510 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GYM62_18335 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D GYM62_07645 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D GYM62_06880 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
C 00750 Vitamin B6 metabolism [PATH:algo00750]
D GYM62_07185 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D GYM62_20235 general stress protein K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D GYM62_14385 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GYM62_15575 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D GYM62_20450 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:algo00760]
D GYM62_16970 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D GYM62_08700 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D GYM62_20035 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D GYM62_09480 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GYM62_19635 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D GYM62_08945 nadE; NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D GYM62_08695 pncA; bifunctional nicotinamidase/pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D GYM62_04915 NAD-dependent deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D GYM62_15975 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D GYM62_01490 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D GYM62_01495 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D GYM62_01485 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D GYM62_01570 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:algo00770]
D GYM62_00540 ilvB; biosynthetic-type acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GYM62_00545 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D GYM62_00550 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GYM62_00535 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GYM62_20550 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D GYM62_18145 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D GYM62_16835 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D GYM62_18215 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D GYM62_13965 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D GYM62_10115 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D GYM62_15925 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D GYM62_02855 DUF479 domain-containing protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D GYM62_02440 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_05700 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_08410 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_20195 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GYM62_18150 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:algo00780]
D GYM62_08935 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GYM62_00095 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19680 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19950 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_13950 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D GYM62_17205 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D GYM62_11585 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:algo00785]
D GYM62_20660 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D GYM62_00215 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_18325 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D GYM62_01565 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D GYM62_04850 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GYM62_20165 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D GYM62_07890 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_20170 odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GYM62_13820 dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D GYM62_20590 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D GYM62_04290 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM62_11445 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:algo00790]
D GYM62_05360 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D GYM62_04205 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D GYM62_13325 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D GYM62_05435 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D GYM62_07875 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D GYM62_05895 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D GYM62_09490 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GYM62_10170 anthranilate synthase component I family protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D GYM62_05355 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM62_12535 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM62_16795 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D GYM62_01180 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D GYM62_12585 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D GYM62_04620 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D GYM62_04645 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D GYM62_04625 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D GYM62_07085 nucleotidyltransferase family protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
C 00670 One carbon pool by folate [PATH:algo00670]
D GYM62_07875 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D GYM62_02880 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D GYM62_16755 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM62_12880 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D GYM62_12885 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GYM62_04290 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GYM62_08290 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_08295 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_03635 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D GYM62_16870 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D GYM62_08285 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D GYM62_20140 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D GYM62_19600 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D GYM62_11580 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GYM62_20590 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_11445 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D GYM62_02270 pyridoxal-phosphate dependent enzyme K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:algo00860]
D GYM62_15665 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM62_05485 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D GYM62_05405 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D GYM62_13660 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D GYM62_13480 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D GYM62_15835 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D GYM62_13620 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D GYM62_03550 hemF; oxygen-dependent coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D GYM62_02740 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D GYM62_02460 CopD family protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D GYM62_15365 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D GYM62_19570 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D GYM62_19575 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D GYM62_02340 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GYM62_02335 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM62_08405 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D GYM62_16935 magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:algo00130]
D GYM62_15525 ubiE; bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D GYM62_04405 chorismate-binding protein K02361 entC; isochorismate synthase [EC:5.4.4.2]
D GYM62_04400 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D GYM62_03245 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D GYM62_04770 AMP-binding protein K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D GYM62_04775 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D GYM62_04410 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D GYM62_07805 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D GYM62_15165 SDR family oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D GYM62_06295 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:algo00900]
D GYM62_18895 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D GYM62_02570 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D GYM62_00840 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D GYM62_00530 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D GYM62_20125 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D GYM62_02390 ispG; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D GYM62_00380 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D GYM62_17080 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_20640 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D GYM62_20465 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D GYM62_15985 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GYM62_13045 M48 family metallopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:algo00906]
D GYM62_17090 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D GYM62_17095 crtI; phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D GYM62_08790 Lycopene beta cyclase K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
D GYM62_17075 fatty acid desaturase K09836 crtW; beta-carotene/zeaxanthin 4-ketolase [EC:1.14.99.63 1.14.99.64]
D GYM62_17110 fatty acid hydroxylase K15746 crtZ; beta-carotene 3-hydroxylase [EC:1.14.15.24]
D GYM62_18015 crtI; phytoene desaturase K10210 crtP; diapolycopene oxygenase [EC:1.14.99.44]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:algo00907]
D GYM62_08265 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GYM62_17480 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D GYM62_05095 transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GYM62_05100 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:algo00523]
D GYM62_07430 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GYM62_07720 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D GYM62_16905 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D GYM62_13470 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D GYM62_12440 hypothetical protein K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D GYM62_04405 chorismate-binding protein K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics [PATH:algo01055]
D GYM62_07720 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D GYM62_12440 hypothetical protein K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:algo00946]
D GYM62_11305 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:algo00311]
D GYM62_12510 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3]
D GYM62_01085 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D GYM62_03655 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D GYM62_08840 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:algo00332]
D GYM62_01210 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D GYM62_01205 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:algo00261]
D GYM62_19560 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GYM62_19555 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GYM62_18340 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20510 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GYM62_20440 thrA; bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D GYM62_15280 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GYM62_10055 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GYM62_01750 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:algo00521]
D GYM62_01375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_06095 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_06280 phospho-sugar mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D GYM62_16785 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D GYM62_18090 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D GYM62_07430 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GYM62_07720 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D GYM62_16905 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D GYM62_13470 SDR family oxidoreductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D GYM62_01375 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D GYM62_06095 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:algo00525]
D GYM62_07430 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GYM62_07720 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:algo00401]
D GYM62_08465 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_04875 histidinol-phosphate aminotransferase family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_07835 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D GYM62_01140 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GYM62_01145 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GYM62_15560 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D GYM62_13320 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GYM62_00095 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19680 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19950 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_13950 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00975 Biosynthesis of various siderophores
D GYM62_13270 alanine/ornithine racemase family PLP-dependent enzyme K21898 orr; ornithine racemase [EC:5.1.1.12]
C 00998 Biosynthesis of various antibiotics
D GYM62_08930 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:algo00999]
D GYM62_19600 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D GYM62_11305 bglX; beta-glucosidase BglX K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:algo00362]
D GYM62_17480 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D GYM62_13420 3-keto-5-aminohexanoate cleavage protein K27848 E2.3.1.318; 3-oxoadipate:acetyl-CoA acetyltransferase [EC:2.3.1.318]
D GYM62_05270 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D GYM62_02510 (2Fe-2S)-binding protein K04755 fdx; ferredoxin, 2Fe-2S
D GYM62_16115 (2Fe-2S)-binding protein K04755 fdx; ferredoxin, 2Fe-2S
D GYM62_17470 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GYM62_06005 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_14720 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GYM62_05910 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM62_06075 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:algo00627]
D GYM62_17600 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM62_01365 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:algo00625]
D GYM62_04260 zinc-dependent alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_10975 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_16295 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D GYM62_05270 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation
C 00622 Xylene degradation [PATH:algo00622]
D GYM62_05270 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00633 Nitrotoluene degradation [PATH:algo00633]
D GYM62_19945 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D GYM62_03405 nickel-dependent hydrogenase large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D GYM62_10880 nickel-dependent hydrogenase large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D GYM62_10875 hydrogenase K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
D GYM62_17480 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:algo00643]
D GYM62_00030 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D GYM62_02950 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D GYM62_17600 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GYM62_01365 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GYM62_05270 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:algo00930]
D GYM62_02745 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D GYM62_06985 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM62_05780 aldo/keto reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:algo00626]
D GYM62_04260 zinc-dependent alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D GYM62_10975 adhP; alcohol dehydrogenase AdhP K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation [PATH:algo00984]
D GYM62_17480 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:algo03020]
D GYM62_14245 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GYM62_14240 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GYM62_14075 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:algo03010]
D GYM62_00175 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_02680 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_13765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_00190 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_02685 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_13760 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_00195 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_02690 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_13755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_02285 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D GYM62_00780 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D GYM62_14180 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D GYM62_14080 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D GYM62_14125 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D GYM62_01715 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D GYM62_14225 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D GYM62_14140 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D GYM62_00785 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D GYM62_14215 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D GYM62_14085 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D GYM62_14230 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D GYM62_14090 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D GYM62_14145 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D GYM62_07215 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D GYM62_15645 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D GYM62_14165 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D GYM62_01710 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D GYM62_14190 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D GYM62_00915 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D GYM62_14635 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GYM62_08580 30S ribosomal protein THX K19033 PSRP4; 30S ribosomal protein S31/Thx
D GYM62_14260 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D GYM62_14195 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D GYM62_14210 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D GYM62_14205 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D GYM62_14150 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D GYM62_14135 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D GYM62_01705 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D GYM62_14255 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D GYM62_14265 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D GYM62_14250 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D GYM62_00790 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D GYM62_14160 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D GYM62_14115 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D GYM62_14175 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D GYM62_14070 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D GYM62_14130 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D GYM62_15660 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D GYM62_07245 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D GYM62_20610 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D GYM62_14185 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D GYM62_14200 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D GYM62_14155 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D GYM62_01665 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D GYM62_20615 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D GYM62_13680 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D GYM62_14170 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D GYM62_14120 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D GYM62_13505 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D GYM62_09875 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D GYM62_13685 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D GYM62_00150 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D GYM62_07250 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D GYM62_14095 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:algo00970]
D GYM62_00185 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM62_20395 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM62_08750 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_13090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_15640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_20830 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_11845 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GYM62_09780 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GYM62_02290 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D GYM62_01695 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D GYM62_06830 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM62_06835 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM62_14295 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM62_17355 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM62_20570 tRNA-His K14226 tRNA-His; tRNA His
D GYM62_00180 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GYM62_00695 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_02645 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_02885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_17350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_20825 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM62_20840 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM62_07230 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM62_09540 tRNA-Ile K14230 tRNA-Met; tRNA Met
D GYM62_15220 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM62_15465 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D GYM62_03275 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM62_11030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM62_20835 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM62_01900 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM62_03270 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM62_13200 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM62_07170 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM62_14290 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM62_14280 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D GYM62_14300 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D GYM62_20715 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM62_20720 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM62_15665 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM62_11415 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GYM62_07745 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D GYM62_08390 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D GYM62_07055 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GYM62_07750 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GYM62_16230 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM62_13110 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D GYM62_17985 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D GYM62_07260 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GYM62_15950 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GYM62_12910 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GYM62_10040 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GYM62_07870 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D GYM62_02930 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GYM62_12600 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM62_18940 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GYM62_08425 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GYM62_07795 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM62_05465 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GYM62_01585 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GYM62_16740 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GYM62_00940 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GYM62_06150 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM62_05945 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
D GYM62_08940 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:algo03060]
D GYM62_14110 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM62_14275 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM62_10200 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM62_16575 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein
D GYM62_15915 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM62_01770 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM62_17285 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM62_01540 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM62_01835 ffs; signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
D GYM62_13695 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM62_11410 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D GYM62_16750 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D GYM62_01745 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GYM62_18945 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum [PATH:algo04141]
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D GYM62_01090 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM62_01290 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM62_01295 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM62_02620 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:algo04122]
D GYM62_07080 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_17925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_07495 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D GYM62_04645 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D GYM62_04620 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D GYM62_04635 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein
D GYM62_04640 HesA/MoeB/ThiF family protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
C 03050 Proteasome
C 03018 RNA degradation [PATH:algo03018]
D GYM62_14060 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM62_07210 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GYM62_12695 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GYM62_20580 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GYM62_20645 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GYM62_08240 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D GYM62_00735 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM62_12780 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM62_16130 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D GYM62_00955 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_13635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM62_10220 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM62_08775 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GYM62_01795 HD domain-containing protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:algo03030]
D GYM62_07560 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_09095 GIY-YIG nuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_16715 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_17890 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_00485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_05230 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_13370 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM62_13495 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM62_05860 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM62_19865 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM62_07545 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D GYM62_09495 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D GYM62_03045 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_03505 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_09985 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_18785 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_14375 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D GYM62_11680 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D GYM62_17015 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM62_10050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:algo03410]
D GYM62_17615 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D GYM62_01740 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D GYM62_18790 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D GYM62_16860 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D GYM62_17430 xth; exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D GYM62_17015 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM62_18045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM62_10050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:algo03420]
D GYM62_18590 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D GYM62_19105 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D GYM62_19160 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D GYM62_16170 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D GYM62_15805 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D GYM62_19660 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GYM62_17015 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM62_10050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:algo03430]
D GYM62_17365 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D GYM62_02770 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D GYM62_14420 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D GYM62_19660 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GYM62_10060 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D GYM62_10065 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D GYM62_18045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM62_03045 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_03505 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_09985 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_18785 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_00485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_05230 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_19865 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM62_13370 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM62_05860 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM62_13495 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM62_07560 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_09095 GIY-YIG nuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_16715 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_17890 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_10050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:algo03440]
D GYM62_18045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM62_03045 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_03505 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_09985 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_18785 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_18320 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D GYM62_16125 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D GYM62_20400 recR; recombination protein RecR K06187 recR; recombination protein RecR
D GYM62_00820 recA; recombinase RecA K03553 recA; recombination protein RecA
D GYM62_17015 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM62_11435 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D GYM62_16680 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D GYM62_13240 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D GYM62_09695 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GYM62_17570 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GYM62_00485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_05230 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_19865 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM62_13370 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM62_05860 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM62_13495 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM62_07560 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_09095 GIY-YIG nuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_16715 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_17890 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_11105 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:algo03250]
D GYM62_03150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus and Alphavirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03273 Virion - Lassa virus and SFTS virus
C 03272 Virion - Hepatitis viruses
D GYM62_14695 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:algo02010]
D GYM62_04250 ATP-binding cassette domain-containing protein K05776 modF; molybdate transport system ATP-binding protein
D GYM62_07415 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GYM62_12820 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GYM62_07425 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GYM62_12830 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GYM62_07420 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GYM62_12825 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GYM62_07335 zinc ABC transporter solute-binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D GYM62_07345 iron chelate uptake ABC transporter family permease subunit K11708 troC; manganese/zinc/iron transport system permease protein
D GYM62_07350 metal ABC transporter permease K11709 troD; manganese/zinc/iron transport system permease protein
D GYM62_07340 metal ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D GYM62_03760 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D GYM62_03965 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D GYM62_03765 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D GYM62_04010 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D GYM62_07860 ABC transporter permease K09808 lolC_E_F; lipoprotein-releasing system permease protein
D GYM62_11130 ABC transporter permease K09808 lolC_E_F; lipoprotein-releasing system permease protein
D GYM62_16560 ABC transporter permease K09808 lolC_E_F; lipoprotein-releasing system permease protein
D GYM62_08740 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GYM62_11135 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GYM62_18275 ccsA; cytochrome c biogenesis protein CcsA K02195 ccmC; heme exporter protein C
D GYM62_17595 ABC transporter permease K02194 ccmB; heme exporter protein B
D GYM62_02780 ABC transporter ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D GYM62_00510 YjgP/YjgQ family permease K11720 lptG; lipopolysaccharide export system permease protein
D GYM62_18050 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D GYM62_12040 ABC transporter permease subunit K19341 nosY; Cu-processing system permease protein
D GYM62_12045 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein
D GYM62_06895 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D GYM62_01820 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein
D GYM62_13520 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D GYM62_15890 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D GYM62_13600 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:algo03070]
D GYM62_03030 TolC family protein K12340 tolC; outer membrane protein
D GYM62_05690 TolC family protein K12340 tolC; outer membrane protein
D GYM62_09615 TolC family protein K12340 tolC; outer membrane protein
D GYM62_13720 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15105 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16200 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16575 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein
D GYM62_14275 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM62_10200 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM62_14110 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM62_15915 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM62_01770 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM62_17285 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM62_13695 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM62_01540 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM62_11410 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D GYM62_16750 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:algo02020]
D GYM62_00805 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM62_18390 HAMP domain-containing histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM62_00810 response regulator transcription factor K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D GYM62_06635 response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D GYM62_10760 TolC family protein K07796 cusC; outer membrane protein, copper/silver efflux system
D GYM62_08495 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D GYM62_10755 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D GYM62_10765 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein
D GYM62_02335 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM62_02555 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GYM62_15540 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D GYM62_19260 response regulator K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D GYM62_00855 response regulator transcription factor K08083 algR; two-component system, LytTR family, response regulator AlgR
D GYM62_10680 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D GYM62_18300 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D GYM62_04515 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM62_02900 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG
D GYM62_09020 short-chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_13105 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D GYM62_10875 hydrogenase K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
D GYM62_03405 nickel-dependent hydrogenase large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D GYM62_10880 nickel-dependent hydrogenase large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D GYM62_00975 TRAP transporter substrate-binding protein K11688 dctP; TRAP-type transport system periplasmic protein
D GYM62_00980 TRAP transporter small permease K11689 dctQ; TRAP-type transport system small permease protein
D GYM62_00985 TRAP transporter large permease K11690 dctM; TRAP-type transport system large permease protein
D GYM62_10310 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GYM62_12850 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GYM62_20855 c-type cytochrome K08738 CYC; cytochrome c
D GYM62_02710 ccoN; cytochrome-c oxidase, cbb3-type subunit I K15862 ccoNO; cytochrome c oxidase cbb3-type subunit I/II [EC:7.1.1.9]
D GYM62_02715 cbb3-type cytochrome c oxidase subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D GYM62_02720 c-type cytochrome K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D GYM62_03030 TolC family protein K12340 tolC; outer membrane protein
D GYM62_05690 TolC family protein K12340 tolC; outer membrane protein
D GYM62_09615 TolC family protein K12340 tolC; outer membrane protein
D GYM62_13720 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15105 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16200 TolC family protein K12340 tolC; outer membrane protein
D GYM62_20530 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D GYM62_03750 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_04145 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_09415 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_16435 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GYM62_00615 glycoside hydrolase family 5 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D GYM62_09140 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04082 Neuroactive ligand signaling
C 04081 Hormone signaling
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecule (CAM) interaction
C 04517 IgSF CAM signaling
C 04518 Integrin signaling
C 04519 Cadherin signaling
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagocytosis
C 04142 Lysosome biogenesis [PATH:algo04142]
D GYM62_07635 formylglycine-generating enzyme family protein K13444 SUMF1; formylglycine-generating enzyme [EC:1.8.3.7]
D GYM62_18585 gldJ; gliding motility lipoprotein GldJ K13444 SUMF1; formylglycine-generating enzyme [EC:1.8.3.7]
D GYM62_01230 glycoside hydrolase family 30 protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM62_04950 glucosylceramidase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM62_17955 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D GYM62_06210 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D GYM62_12130 exo-alpha-sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D GYM62_01635 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase K01444 AGA; N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26]
C 04146 Peroxisome [PATH:algo04146]
D GYM62_08670 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_17460 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_12510 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3]
D GYM62_11380 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_20775 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GYM62_08265 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GYM62_19060 catalase K03781 katE; catalase [EC:1.11.1.6]
D GYM62_17295 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
D GYM62_18685 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
C 04149 Peroxisome - yeast
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D GYM62_07790 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
C 04156 Integrated stress response (ISR) signaling pathway [PATH:algo04156]
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D GYM62_07230 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM62_09540 tRNA-Ile K14230 tRNA-Met; tRNA Met
D GYM62_15220 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM62_13635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM62_10220 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:algo02024]
D GYM62_01140 anthranilate synthase component I family protein K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GYM62_01145 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GYM62_15560 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GYM62_08670 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_17460 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_10310 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GYM62_17510 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GYM62_11335 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_11975 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_01770 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM62_16575 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein
D GYM62_14275 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM62_10200 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM62_14110 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM62_15915 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM62_17285 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM62_13695 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM62_01540 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM62_19260 response regulator K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:algo02040]
D GYM62_07205 RNA polymerase sigma factor RpoD/SigA K03086 rpoD; RNA polymerase primary sigma factor
D GYM62_13105 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D GYM62_14060 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagosome formation
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04981 Folate transport and metabolism [PATH:algo04981]
D GYM62_20140 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
D GYM62_07875 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D GYM62_16755 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GYM62_03635 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D GYM62_08290 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_08295 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04980 Cobalamin transport and metabolism [PATH:algo04980]
D GYM62_08405 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D GYM62_02470 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-]
D GYM62_02545 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_02550 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D GYM62_08290 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GYM62_08295 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
C 04382 Cornified envelope formation [PATH:algo04382]
D GYM62_01230 glycoside hydrolase family 30 protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM62_04950 glucosylceramidase K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D GYM62_04380 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:algo01501]
D GYM62_01430 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D GYM62_01425 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D GYM62_06160 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_11670 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_19955 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_11345 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11985 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_13845 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_15115 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_16210 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11340 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_11980 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_13840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_15110 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_16205 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_11335 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_11975 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_03030 TolC family protein K12340 tolC; outer membrane protein
D GYM62_05690 TolC family protein K12340 tolC; outer membrane protein
D GYM62_09615 TolC family protein K12340 tolC; outer membrane protein
D GYM62_13720 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15105 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16200 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15800 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM62_16100 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GYM62_19980 transpeptidase family protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:algo01502]
D GYM62_15540 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D GYM62_14700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM62_16865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GYM62_18880 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D GYM62_20360 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D GYM62_19990 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GYM62_20005 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:algo01503]
D GYM62_03355 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM62_04170 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM62_03150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D GYM62_11345 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11985 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_13845 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_15115 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_16210 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11340 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_11980 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_13840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_15110 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_16205 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_03030 TolC family protein K12340 tolC; outer membrane protein
D GYM62_05690 TolC family protein K12340 tolC; outer membrane protein
D GYM62_09615 TolC family protein K12340 tolC; outer membrane protein
D GYM62_13720 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15105 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16200 TolC family protein K12340 tolC; outer membrane protein
D GYM62_02785 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:algo01000]
C 01001 Protein kinases [BR:algo01001]
D GYM62_02120 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_04340 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_13185 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_13190 phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_03750 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_04145 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_09415 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_00805 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM62_18390 HAMP domain-containing histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM62_18240 histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D GYM62_05905 response regulator K20971 ladS; two-component system, sensor histidine kinase LadS
C 01009 Protein phosphatases and associated proteins [BR:algo01009]
D GYM62_11580 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:algo01002]
D GYM62_18945 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D GYM62_03410 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D GYM62_10885 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D GYM62_05395 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GYM62_11695 SH3 domain-containing protein K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]
D GYM62_14680 C40 family peptidase K13695 nlpC; probable lipoprotein NlpC
D GYM62_02910 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D GYM62_18775 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GYM62_18130 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GYM62_03775 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_03790 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_03810 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_17620 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GYM62_20705 type 1 glutamine amidotransferase K05520 yhbO; deglycase [EC:3.5.1.124]
D GYM62_05345 L,D-transpeptidase family protein K21470 ldtD; L,D-transpeptidase
D GYM62_14305 M1 family metallopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D GYM62_08985 M3 family metallopeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D GYM62_15540 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D GYM62_08345 leucyl aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GYM62_15610 peptidase M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GYM62_20215 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GYM62_19735 M20 family metallopeptidase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D GYM62_01470 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B
D GYM62_06690 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B
D GYM62_12595 amidohydrolase K12941 abgB; aminobenzoyl-glutamate utilization protein B
D GYM62_14105 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D GYM62_00045 M24 family metallopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D GYM62_06405 M24 family metallopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D GYM62_13345 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D GYM62_11595 ATP-dependent zinc metalloprotease FtsH K08956 AFG3; AFG3 family protein [EC:3.4.24.-]
D GYM62_13045 M48 family metallopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D GYM62_02575 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D GYM62_00960 zinc-dependent peptidase K09933 mtfA; MtfA peptidase
D GYM62_14695 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D GYM62_08005 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D GYM62_05130 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D GYM62_11055 peptidase S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D GYM62_02635 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D GYM62_02595 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D GYM62_01745 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GYM62_12965 proline iminopeptidase-family hydrolase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D GYM62_10340 alpha/beta hydrolase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
D GYM62_00160 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D GYM62_20750 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D GYM62_04965 protease K08676 tri; tricorn protease [EC:3.4.21.-]
D GYM62_06155 peptidase S41 K08676 tri; tricorn protease [EC:3.4.21.-]
D GYM62_19275 protease K08676 tri; tricorn protease [EC:3.4.21.-]
D GYM62_01085 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D GYM62_03655 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D GYM62_08840 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D GYM62_13330 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D GYM62_14410 rhomboid family intramembrane serine protease K07059 rho2; rhomboid family protease [EC:3.4.21.105]
D GYM62_14415 rhomboid family intramembrane serine protease K07059 rho2; rhomboid family protease [EC:3.4.21.105]
D GYM62_05125 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D GYM62_04855 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D GYM62_06045 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_06695 gamma-glutamyltransferase family protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_09790 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GYM62_14755 hflC; protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D GYM62_14760 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:algo01003]
D GYM62_07855 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D GYM62_04035 alpha-1,3-fucosyl transferase K20151 fucT; alpha(1,3/1,4) fucosyltransferase [EC:2.4.1.65 2.4.1.152]
D GYM62_18140 glycogen/starch synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D GYM62_18725 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_15800 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM62_20000 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_16105 rodA; rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_03725 WecB/TagA/CpsF family glycosyltransferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D GYM62_09300 WecB/TagA/CpsF family glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D GYM62_07435 glycosyltransferase family 1 protein K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D GYM62_19605 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:algo01005]
D GYM62_02785 lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GYM62_12530 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D GYM62_02790 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D GYM62_02795 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D GYM62_11600 UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D GYM62_04435 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D GYM62_19655 lysophospholipid acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D GYM62_20535 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D GYM62_05340 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D GYM62_04150 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D GYM62_05335 HAD hydrolase family protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D GYM62_12775 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D GYM62_03970 glycosyltransferase family 2 protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:algo01011]
D GYM62_19670 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GYM62_06260 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GYM62_20010 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GYM62_19995 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GYM62_19985 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GYM62_18880 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D GYM62_14700 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GYM62_16865 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GYM62_05125 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D GYM62_19990 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GYM62_20005 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D GYM62_18565 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM62_03545 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GYM62_15800 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GYM62_16100 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GYM62_19980 transpeptidase family protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GYM62_05130 D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D GYM62_11055 peptidase S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D GYM62_18725 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_20000 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_16105 rodA; rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_05345 L,D-transpeptidase family protein K21470 ldtD; L,D-transpeptidase
D GYM62_15540 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D GYM62_11420 LysM peptidoglycan-binding domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D GYM62_13360 LysM peptidoglycan-binding domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D GYM62_16195 transporter substrate-binding domain-containing protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D GYM62_02190 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D GYM62_13885 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D GYM62_03355 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM62_04170 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM62_19610 N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:algo01004]
D GYM62_13320 fabD; ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GYM62_04835 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GYM62_09880 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GYM62_08935 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GYM62_00095 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19680 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_19950 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GYM62_02790 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D GYM62_13950 SDR family oxidoreductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D GYM62_13405 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D GYM62_06165 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D GYM62_20200 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26]
D GYM62_16705 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GYM62_08670 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_17460 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_02280 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GYM62_08385 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:algo01006]
D GYM62_20640 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D GYM62_20465 polyprenyl synthetase family protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D GYM62_15985 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GYM62_17090 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D GYM62_08870 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GYM62_07805 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D GYM62_02340 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:algo01007]
D GYM62_15665 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM62_07055 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GYM62_07585 tRNA glutamyl-Q synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D GYM62_06150 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM62_05945 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D GYM62_12910 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GYM62_07795 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM62_10040 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GYM62_18940 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GYM62_02930 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GYM62_12600 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM62_08425 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GYM62_16230 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM62_13110 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D GYM62_01585 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GYM62_17985 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D GYM62_15950 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GYM62_05465 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GYM62_07260 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GYM62_07750 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GYM62_16740 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GYM62_00940 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GYM62_06365 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_20675 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D GYM62_08565 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D GYM62_08460 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D GYM62_04875 histidinol-phosphate aminotransferase family protein K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_07835 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GYM62_05425 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GYM62_07690 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GYM62_17205 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D GYM62_13670 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D GYM62_06950 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GYM62_05405 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D GYM62_02440 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_05700 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_08410 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GYM62_14385 alanine--glyoxylate aminotransferase family protein K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GYM62_03990 rffA; dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:algo00194]
D GYM62_06585 Rieske (2Fe-2S) protein K02636 petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
D GYM62_14640 atpC; ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GYM62_14645 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D GYM62_15755 atpG; ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GYM62_15760 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D GYM62_15765 atpH; ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D GYM62_15770 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GYM62_15775 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D GYM62_15780 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:algo03000]
D GYM62_06485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_06515 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_18515 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D GYM62_19055 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D GYM62_13315 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D GYM62_19915 DeoR/GlpR transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D GYM62_04670 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM62_08630 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM62_09445 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM62_12925 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYM62_03615 winged helix-turn-helix transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D GYM62_08055 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM62_18500 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D GYM62_17105 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D GYM62_02655 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GYM62_10610 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GYM62_10655 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GYM62_16390 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GYM62_18605 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GYM62_10310 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GYM62_08110 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D GYM62_00060 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYM62_15170 helix-turn-helix transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYM62_11010 winged helix-turn-helix transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D GYM62_11750 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D GYM62_07330 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D GYM62_08535 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D GYM62_06160 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_11670 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_19955 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_11585 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D GYM62_20340 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D GYM62_04470 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D GYM62_11965 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D GYM62_01760 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM62_02245 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GYM62_20545 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GYM62_07180 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D GYM62_15250 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D GYM62_19965 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:algo03021]
D GYM62_14075 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GYM62_14245 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GYM62_14240 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GYM62_07205 RNA polymerase sigma factor RpoD/SigA K03086 rpoD; RNA polymerase primary sigma factor
D GYM62_00495 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM62_11080 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM62_15460 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM62_15685 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GYM62_09140 RNA polymerase sigma-70 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D GYM62_13105 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
D GYM62_16075 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D GYM62_15900 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D GYM62_14270 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D GYM62_08225 STAS domain-containing protein K04749 rsbV; anti-sigma B factor antagonist
D GYM62_15250 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D GYM62_09845 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D GYM62_16130 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:algo03019]
D GYM62_18805 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-]
D GYM62_08940 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GYM62_00955 rny; ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D GYM62_20645 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GYM62_12695 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GYM62_20580 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GYM62_08240 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D GYM62_00735 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM62_12780 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM62_14060 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM62_07210 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GYM62_16130 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D GYM62_08015 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_08860 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D GYM62_13635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM62_10220 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM62_08775 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GYM62_07025 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:algo03011]
D GYM62_02285 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D GYM62_00780 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D GYM62_14180 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D GYM62_14080 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D GYM62_14125 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D GYM62_01715 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D GYM62_14225 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D GYM62_14140 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D GYM62_00785 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D GYM62_14215 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D GYM62_14085 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D GYM62_14230 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D GYM62_14090 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D GYM62_14145 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D GYM62_07215 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D GYM62_15645 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D GYM62_14165 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D GYM62_01710 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D GYM62_14190 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D GYM62_00915 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D GYM62_14635 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GYM62_08580 30S ribosomal protein THX K19033 PSRP4; 30S ribosomal protein S31/Thx
D GYM62_14260 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D GYM62_14195 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D GYM62_14210 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D GYM62_14205 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D GYM62_14150 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D GYM62_14135 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D GYM62_01705 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D GYM62_14255 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D GYM62_14265 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D GYM62_14250 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D GYM62_00790 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D GYM62_14160 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D GYM62_14115 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D GYM62_14175 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D GYM62_14070 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D GYM62_14130 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D GYM62_15660 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D GYM62_07245 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D GYM62_20610 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D GYM62_14185 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D GYM62_14200 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D GYM62_14155 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D GYM62_20615 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D GYM62_13680 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D GYM62_14170 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D GYM62_14120 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D GYM62_13505 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D GYM62_09875 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D GYM62_13685 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D GYM62_00150 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D GYM62_07250 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D GYM62_14095 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D GYM62_01665 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D GYM62_00175 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_02680 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_13765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_00190 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_02685 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_13760 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_00195 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_02690 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_13755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 03009 Ribosome biogenesis [BR:algo03009]
D GYM62_08940 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GYM62_15225 GTPase Era K03595 era; GTPase
D GYM62_00275 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D GYM62_15250 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D GYM62_16075 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D GYM62_15900 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D GYM62_14270 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D GYM62_09860 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D GYM62_18915 methyltransferase domain-containing protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D GYM62_08245 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D GYM62_00490 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D GYM62_19970 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D GYM62_15605 SAM-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D GYM62_16790 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D GYM62_12765 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D GYM62_18360 rlmF; 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D GYM62_16410 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D GYM62_08820 oxidoreductase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D GYM62_09830 class I SAM-dependent rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D GYM62_08605 class I SAM-dependent RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D GYM62_14395 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D GYM62_04315 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D GYM62_16015 rRNA pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D GYM62_00795 RNA pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D GYM62_16155 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D GYM62_19925 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D GYM62_16460 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D GYM62_16245 rluF; 23S rRNA pseudouridine(2604) synthase RluF K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D GYM62_13485 rimK; 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D GYM62_15650 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D GYM62_00630 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D GYM62_18040 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D GYM62_18805 Rne/Rng family ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-]
D GYM62_20760 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D GYM62_08240 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D GYM62_20540 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D GYM62_15230 ribosome biogenesis GTPase Der K03977 engA; GTPase
D GYM62_16910 hflX; GTPase HflX K03665 hflX; GTPase
D GYM62_00760 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D GYM62_02650 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D GYM62_16565 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D GYM62_16080 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D GYM62_11590 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D GYM62_17440 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D GYM62_14625 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor
D GYM62_09065 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D GYM62_09870 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:algo03016]
D GYM62_08230 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D GYM62_01795 HD domain-containing protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D GYM62_15665 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM62_05465 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GYM62_18940 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GYM62_12600 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM62_10040 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GYM62_07055 glutamine--tRNA ligase/YqeY domain fusion protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GYM62_07795 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM62_08425 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GYM62_16230 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM62_07750 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GYM62_13110 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D GYM62_17985 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D GYM62_07260 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GYM62_15950 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GYM62_12910 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GYM62_02930 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GYM62_01585 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GYM62_16740 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GYM62_00940 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GYM62_06150 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM62_05945 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D GYM62_04245 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D GYM62_09840 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GYM62_10180 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 CDK5RAP1; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D GYM62_04510 mtaB; tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase [EC:2.8.4.5]
D GYM62_05900 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D GYM62_13595 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D GYM62_06885 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D GYM62_07080 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_17925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_00760 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D GYM62_08870 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GYM62_07360 mnmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D GYM62_17445 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GYM62_00470 selD; selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D GYM62_00155 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D GYM62_00870 ettA; energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D GYM62_07585 tRNA glutamyl-Q synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D GYM62_18680 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D GYM62_20080 dusB; tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D GYM62_03755 methyltransferase domain-containing protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D GYM62_15655 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D GYM62_06120 RNA methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D GYM62_15350 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D GYM62_03560 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D GYM62_07500 pseudouridylate synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D GYM62_07495 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D GYM62_04220 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D GYM62_04295 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein
D GYM62_04445 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D GYM62_00830 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D GYM62_03250 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D GYM62_05355 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM62_12535 6-carboxytetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GYM62_12585 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D GYM62_16960 queG; tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D GYM62_00475 mnmH; tRNA 2-selenouridine(34) synthase MnmH K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D GYM62_00505 tgt; tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D GYM62_13990 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D GYM62_00165 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D GYM62_11705 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D GYM62_02810 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D GYM62_20645 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GYM62_07210 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:algo03012]
D GYM62_07815 translation initiation factor K03113 EIF1; translation initiation factor 1
D GYM62_16070 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D GYM62_07255 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D GYM62_02405 ABC-F family ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D GYM62_09085 ABC-F family ATP-binding cassette domain-containing protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D GYM62_00775 elongation factor Ts K02357 tsf; elongation factor Ts
D GYM62_14285 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM62_14220 fusA; elongation factor G K02355 fusA; elongation factor G
D GYM62_18120 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D GYM62_14320 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D GYM62_18905 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D GYM62_01660 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D GYM62_14100 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D GYM62_09885 efp; elongation factor P K02356 efp; elongation factor P
D GYM62_08025 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D GYM62_00315 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D GYM62_08540 arfB; aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:algo03110]
D GYM62_20225 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D GYM62_02215 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D GYM62_02630 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D GYM62_02600 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D GYM62_13635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM62_10220 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM62_00285 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D GYM62_00280 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D GYM62_01090 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM62_01290 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM62_01295 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM62_02620 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D GYM62_10215 co-chaperone GroES K04078 groES; chaperonin GroES
D GYM62_13640 co-chaperone GroES K04078 groES; chaperonin GroES
D GYM62_11595 ATP-dependent zinc metalloprotease FtsH K08956 AFG3; AFG3 family protein [EC:3.4.24.-]
D GYM62_15780 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GYM62_03430 hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D GYM62_10845 hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D GYM62_03435 hypB; hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D GYM62_10805 hypB; hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D GYM62_06210 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D GYM62_03150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D GYM62_06130 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D GYM62_16805 peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D GYM62_18640 peptidylprolyl isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D GYM62_01525 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D GYM62_16420 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D GYM62_15875 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D GYM62_15880 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D GYM62_00480 trxA; thioredoxin K03671 TXN; thioredoxin
D GYM62_12745 trxA; thioredoxin K03671 TXN; thioredoxin
D GYM62_15940 thioredoxin family protein K03671 TXN; thioredoxin
D GYM62_16005 trxA; thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:algo04131]
D GYM62_18630 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GYM62_06825 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_20815 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_08920 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D GYM62_13130 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:algo03051]
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:algo03032]
D GYM62_14375 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D GYM62_06485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_06515 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_18795 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta
D GYM62_02555 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GYM62_07545 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D GYM62_09495 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D GYM62_03045 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_03505 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_09985 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_18785 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_00485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_05230 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_19865 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM62_05860 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM62_13495 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM62_07560 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_09095 GIY-YIG nuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_16715 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_17890 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_13370 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM62_11680 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D GYM62_17015 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM62_10050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D GYM62_05815 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D GYM62_08780 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D GYM62_06115 DNA gyrase/topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GYM62_06110 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GYM62_04920 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:algo03036]
D GYM62_06485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_06515 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_08940 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GYM62_18795 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta
D GYM62_02555 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GYM62_00305 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D GYM62_12005 hypothetical protein K04047 dps; starvation-inducible DNA-binding protein
D GYM62_08055 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYM62_06570 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D GYM62_18890 segregation/condensation protein A K05896 scpA; segregation and condensation protein A
D GYM62_15245 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D GYM62_20020 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D GYM62_01820 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein
D GYM62_19980 transpeptidase family protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GYM62_15550 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D GYM62_20015 cell division protein K03589 ftsQ; cell division protein FtsQ
D GYM62_20000 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_06895 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D GYM62_20025 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GYM62_00950 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA
D GYM62_03355 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM62_04170 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GYM62_11345 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11985 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_13845 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_15115 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_16210 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_16085 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D GYM62_16090 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D GYM62_16105 rodA; rod shape-determining protein RodA K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_01765 ParA family protein K03496 parA; chromosome partitioning protein
D GYM62_15045 ParA family protein K03496 parA; chromosome partitioning protein
D GYM62_15080 ParA family protein K03496 parA; chromosome partitioning protein
D GYM62_01760 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYM62_06115 DNA gyrase/topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GYM62_06110 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GYM62_17445 mnmG; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GYM62_00490 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D GYM62_12225 tyrosine-type recombinase/integrase K03733 xerC; integrase/recombinase XerC
D GYM62_12360 tyrosine-type recombinase/integrase K03733 xerC; integrase/recombinase XerC
D GYM62_14630 tyrosine-type recombinase/integrase K03733 xerC; integrase/recombinase XerC
D GYM62_01350 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D GYM62_12230 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D GYM62_12325 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D GYM62_12365 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D GYM62_14495 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D GYM62_15190 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D GYM62_19040 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D GYM62_19070 tyrosine-type recombinase/integrase K04763 xerD; integrase/recombinase XerD
D GYM62_09500 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D GYM62_01260 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D GYM62_10565 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D GYM62_20455 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D GYM62_15520 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:algo03400]
D GYM62_11330 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D GYM62_08075 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D GYM62_11715 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D GYM62_01740 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D GYM62_18790 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D GYM62_17615 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D GYM62_17270 S1/P1 nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D GYM62_02200 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GYM62_18415 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D GYM62_16860 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D GYM62_17430 xth; exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D GYM62_18045 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GYM62_10050 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D GYM62_17015 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GYM62_19105 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D GYM62_19160 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D GYM62_16170 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D GYM62_15805 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D GYM62_19660 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GYM62_14245 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GYM62_14240 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GYM62_14075 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GYM62_18590 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D GYM62_17365 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D GYM62_02770 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D GYM62_14420 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D GYM62_10060 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D GYM62_10065 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D GYM62_00485 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_05230 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GYM62_19865 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GYM62_05860 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GYM62_13495 DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GYM62_07560 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_09095 GIY-YIG nuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_16715 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_17890 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GYM62_13370 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GYM62_03045 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_03505 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_09985 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_18785 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_06455 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D GYM62_00820 recA; recombinase RecA K03553 recA; recombination protein RecA
D GYM62_11435 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D GYM62_16680 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D GYM62_13240 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D GYM62_11105 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D GYM62_13895 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
D GYM62_13890 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D GYM62_17020 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D GYM62_18320 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D GYM62_09695 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GYM62_17570 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GYM62_16125 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D GYM62_20400 recR; recombination protein RecR K06187 recR; recombination protein RecR
D GYM62_13955 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D GYM62_04730 cas1; type II CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D GYM62_07300 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D GYM62_05815 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D GYM62_08780 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D GYM62_04920 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D GYM62_18795 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta
D GYM62_00735 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM62_12780 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GYM62_10175 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D GYM62_10290 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D GYM62_18030 RecX family transcriptional regulator K03565 recX; regulatory protein
D GYM62_02230 DNA polymerase/3'-5' exonuclease PolX K02347 polX; DNA polymerase (family X)
D GYM62_07955 ligase-associated DNA damage response DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D GYM62_20600 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GYM62_20605 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GYM62_18635 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:algo03029]
D GYM62_16070 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D GYM62_07255 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D GYM62_00775 elongation factor Ts K02357 tsf; elongation factor Ts
D GYM62_14285 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM62_14220 fusA; elongation factor G K02355 fusA; elongation factor G
D GYM62_15225 GTPase Era K03595 era; GTPase
D GYM62_06150 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GYM62_12600 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GYM62_16230 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GYM62_17985 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D GYM62_07795 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GYM62_11415 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GYM62_07745 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D GYM62_08390 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D GYM62_03045 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_03505 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_09985 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_18785 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GYM62_15990 BamA/TamA family outer membrane protein K07277 SAM50; outer membrane protein insertion porin family
D GYM62_13635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM62_00280 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D GYM62_10220 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM62_10215 co-chaperone GroES K04078 groES; chaperonin GroES
D GYM62_13640 co-chaperone GroES K04078 groES; chaperonin GroES
D GYM62_00285 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D GYM62_07080 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_17925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_09500 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D GYM62_02340 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GYM62_02335 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D GYM62_01770 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM62_02360 SCO family protein K07152 SCO1; protein SCO1
D GYM62_02455 SCO family protein K07152 SCO1; protein SCO1
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:algo02000]
D GYM62_13520 ABC transporter ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D GYM62_15890 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D GYM62_13600 ABC transporter ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D GYM62_17855 peptidase domain-containing ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D GYM62_14535 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D GYM62_04250 ATP-binding cassette domain-containing protein K05776 modF; molybdate transport system ATP-binding protein
D GYM62_07415 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GYM62_12820 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GYM62_07425 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GYM62_12830 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GYM62_07420 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GYM62_12825 ATP-binding cassette domain-containing protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GYM62_14650 ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein
D GYM62_14655 iron ABC transporter permease K25133 hmuU; heme transport system permease protein
D GYM62_14660 heme ABC transporter ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D GYM62_10905 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D GYM62_10900 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D GYM62_02485 ABC transporter substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D GYM62_02490 iron ABC transporter permease K25027 btuC; cobalamin transport system permease protein
D GYM62_02495 ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D GYM62_07335 zinc ABC transporter solute-binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D GYM62_07345 iron chelate uptake ABC transporter family permease subunit K11708 troC; manganese/zinc/iron transport system permease protein
D GYM62_07350 metal ABC transporter permease K11709 troD; manganese/zinc/iron transport system permease protein
D GYM62_07340 metal ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D GYM62_03760 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D GYM62_03965 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D GYM62_03765 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D GYM62_04010 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D GYM62_00510 YjgP/YjgQ family permease K11720 lptG; lipopolysaccharide export system permease protein
D GYM62_18050 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D GYM62_12040 ABC transporter permease subunit K19341 nosY; Cu-processing system permease protein
D GYM62_12045 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein
D GYM62_19875 gldF; gliding motility-associated ABC transporter permease subunit GldF K25151 gldF; gliding motility-associated transport system permease protein
D GYM62_19880 gldA; gliding motility-associated ABC transporter ATP-binding subunit GldA K25152 gldA; gliding motility-associated transport system ATP-binding protein
D GYM62_19870 gldG; gliding motility-associated ABC transporter substrate-binding protein GldG K25153 gldG; gliding motility-associatede transport system auxiliary component
D GYM62_07860 ABC transporter permease K09808 lolC_E_F; lipoprotein-releasing system permease protein
D GYM62_11130 ABC transporter permease K09808 lolC_E_F; lipoprotein-releasing system permease protein
D GYM62_16560 ABC transporter permease K09808 lolC_E_F; lipoprotein-releasing system permease protein
D GYM62_08740 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GYM62_11135 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GYM62_18275 ccsA; cytochrome c biogenesis protein CcsA K02195 ccmC; heme exporter protein C
D GYM62_17595 ABC transporter permease K02194 ccmB; heme exporter protein B
D GYM62_02780 ABC transporter ATP-binding protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D GYM62_06895 ABC transporter permease K09811 ftsX; cell division transport system permease protein
D GYM62_01820 ATP-binding cassette domain-containing protein K09812 ftsE; cell division transport system ATP-binding protein
D GYM62_00300 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D GYM62_00295 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GYM62_00685 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GYM62_00825 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM62_02430 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM62_04450 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM62_09625 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM62_09630 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM62_09635 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM62_13395 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D GYM62_02425 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GYM62_08400 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GYM62_09620 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GYM62_09660 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GYM62_13400 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GYM62_03605 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D GYM62_03565 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D GYM62_07120 DASS family sodium-coupled anion symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D GYM62_18670 Na/Pi cotransporter family protein K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D GYM62_08045 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D GYM62_07490 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D GYM62_03095 fucP; L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, fucose-galactose-glucose:H+ symporter family protein
D GYM62_15360 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D GYM62_01430 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D GYM62_13130 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D GYM62_19900 aquaporin family protein K02440 glpF; glycerol uptake facilitator
D GYM62_18875 ion transporter K10716 kch; voltage-gated potassium channel
D GYM62_13655 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D GYM62_18295 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D GYM62_02750 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D GYM62_08195 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D GYM62_16940 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D GYM62_08000 mscL; large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D GYM62_16360 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D GYM62_14010 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein
D GYM62_09855 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D GYM62_05880 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D GYM62_13150 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D GYM62_05885 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D GYM62_16965 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter
D GYM62_09640 hypothetical protein K08994 yneE; ion channel-forming bestrophin family protein
D GYM62_11005 merTP; mercuric transport protein MerTP K08363 merT; mercuric ion transport protein
D GYM62_16810 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GYM62_18780 gldE; gliding motility-associated protein GldE K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GYM62_00255 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D GYM62_05185 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D GYM62_12125 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D GYM62_13000 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D GYM62_14785 TonB-dependent receptor plug domain-containing protein K16091 fecA; Fe(3+) dicitrate transport protein
D GYM62_20735 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D GYM62_12010 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D GYM62_14670 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D GYM62_02480 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM62_07935 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM62_11225 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM62_12140 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM62_16920 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM62_17945 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GYM62_10760 TolC family protein K07796 cusC; outer membrane protein, copper/silver efflux system
D GYM62_03030 TolC family protein K12340 tolC; outer membrane protein
D GYM62_05690 TolC family protein K12340 tolC; outer membrane protein
D GYM62_09615 TolC family protein K12340 tolC; outer membrane protein
D GYM62_13720 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15105 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16200 TolC family protein K12340 tolC; outer membrane protein
D GYM62_11335 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_11975 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_15990 BamA/TamA family outer membrane protein K07277 SAM50; outer membrane protein insertion porin family
D GYM62_13975 bamD; outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D GYM62_04660 SLC45 family MFS transporter K16211 malY; maltose/moltooligosaccharide transporter
D GYM62_09465 SLC45 family MFS transporter K16211 malY; maltose/moltooligosaccharide transporter
D GYM62_09590 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D GYM62_10620 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D GYM62_10690 CusA/CzcA family heavy metal efflux RND transporter K15726 czcA; heavy metal efflux system protein
D GYM62_10765 efflux RND transporter permease subunit K07787 cusA; copper/silver efflux system protein
D GYM62_11340 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_11980 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_13840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_15110 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_16205 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_03040 efflux RND transporter permease subunit K18989 vexF; multidrug efflux pump
D GYM62_10605 YnfA family protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D GYM62_16185 TRAP transporter large permease subunit K06155 gntT; Gnt-I system high-affinity gluconate transporter
D GYM62_11175 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D GYM62_06745 glycine/betaine ABC transporter K05020 opuD; glycine betaine transporter
D GYM62_00240 calcium/sodium antiporter K07301 yrbG; cation:H+ antiporter
D GYM62_20255 calcium/sodium antiporter K07301 yrbG; cation:H+ antiporter
D GYM62_16700 cation acetate symporter K14393 actP; cation/acetate symporter
D GYM62_11535 nhaC; Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D GYM62_06370 sodium:proton antiporter K03316 nhaP; Na+:H+ antiporter
D GYM62_07470 potassium transporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D GYM62_07465 sodium:proton antiporter K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D GYM62_20250 cation:proton antiporter K26730 napA; Na+:H+ antiporter
D GYM62_15370 cation:proton antiporter K26731 CHX; K+:H+ antiporter
D GYM62_07960 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D GYM62_07965 trkA; Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein
D GYM62_18730 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D GYM62_18870 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D GYM62_15965 chrA; chromate efflux transporter K07240 chrA; chromate transporter
D GYM62_12515 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D GYM62_00975 TRAP transporter substrate-binding protein K11688 dctP; TRAP-type transport system periplasmic protein
D GYM62_00980 TRAP transporter small permease K11689 dctQ; TRAP-type transport system small permease protein
D GYM62_00985 TRAP transporter large permease K11690 dctM; TRAP-type transport system large permease protein
D GYM62_05315 Na/Pi cotransporter family protein K03324 yjbB; phosphate:Na+ symporter
D GYM62_16780 AEC family transporter K24180 mleP; malate permease and related proteins
D GYM62_08235 queuosine precursor transporter K09125 yhhQ; queuosine precursor transporter
D GYM62_12625 hypothetical protein K22736 VIT; vacuolar iron transporter family protein
D GYM62_14380 MarC family protein K05595 marC; multiple antibiotic resistance protein
D GYM62_20000 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D GYM62_16050 carbon starvation protein A K06200 cstA; carbon starvation protein
D GYM62_08170 energy transducer TonB K03832 tonB; periplasmic protein TonB
D GYM62_11455 energy transducer TonB K03832 tonB; periplasmic protein TonB
D GYM62_11460 energy transducer TonB K03832 tonB; periplasmic protein TonB
D GYM62_11040 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D GYM62_10615 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D GYM62_10685 efflux RND transporter periplasmic adaptor subunit K15727 czcB; membrane fusion protein, heavy metal efflux system
D GYM62_08495 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D GYM62_10755 efflux RND transporter periplasmic adaptor subunit K07798 cusB; membrane fusion protein, copper/silver efflux system
D GYM62_11345 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11985 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_13845 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_15115 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_16210 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_03035 efflux RND transporter periplasmic adaptor subunit K18990 vexE; membrane fusion protein, multidrug efflux system
D GYM62_03750 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_04145 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_09415 polysaccharide biosynthesis tyrosine autokinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GYM62_01620 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_01995 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_02160 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_04115 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_06550 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_08625 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_09200 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_10420 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_12545 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_12570 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_14335 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_16500 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_17725 RagB/SusD family nutrient uptake outer membrane protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D GYM62_19170 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D GYM62_08135 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D GYM62_08140 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D GYM62_17125 tryptophan-rich sensory protein K05770 TSPO; translocator protein
D GYM62_18260 ccsA; cytochrome c biogenesis protein CcsA K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D GYM62_08760 DUF202 domain-containing protein K00389 yidH; inner membrane protein YidH
C 02044 Secretion system [BR:algo02044]
D GYM62_03030 TolC family protein K12340 tolC; outer membrane protein
D GYM62_05690 TolC family protein K12340 tolC; outer membrane protein
D GYM62_09615 TolC family protein K12340 tolC; outer membrane protein
D GYM62_13720 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15105 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16200 TolC family protein K12340 tolC; outer membrane protein
D GYM62_06255 dCMP deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D GYM62_00725 DUF4131 domain-containing protein K02238 comEC; competence protein ComEC
D GYM62_17285 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GYM62_16575 protein translocase subunit SecDF K12257 secDF; SecD/SecF fusion protein
D GYM62_14275 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GYM62_10200 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D GYM62_14110 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D GYM62_01540 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GYM62_13695 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GYM62_15915 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D GYM62_01770 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GYM62_11410 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA
D GYM62_16750 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:algo02042]
D GYM62_16810 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GYM62_18780 gldE; gliding motility-associated protein GldE K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GYM62_12960 hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:algo02022]
D GYM62_00805 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM62_18390 HAMP domain-containing histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GYM62_00810 response regulator transcription factor K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D GYM62_06635 response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D GYM62_18240 histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D GYM62_19260 response regulator K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D GYM62_00855 response regulator transcription factor K08083 algR; two-component system, LytTR family, response regulator AlgR
D GYM62_01550 response regulator transcription factor K02477 K02477; two-component system, LytTR family, response regulator
D GYM62_08545 response regulator transcription factor K02477 K02477; two-component system, LytTR family, response regulator
D GYM62_18820 response regulator transcription factor K02477 K02477; two-component system, LytTR family, response regulator
D GYM62_19095 response regulator K02477 K02477; two-component system, LytTR family, response regulator
D GYM62_20790 response regulator transcription factor K02477 K02477; two-component system, LytTR family, response regulator
D GYM62_02900 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG
D GYM62_05905 response regulator K20971 ladS; two-component system, sensor histidine kinase LadS
C 02035 Bacterial motility proteins [BR:algo02035]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:algo04812]
D GYM62_16085 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D GYM62_20025 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GYM62_20020 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D GYM62_01765 ParA family protein K03496 parA; chromosome partitioning protein
D GYM62_15045 ParA family protein K03496 parA; chromosome partitioning protein
D GYM62_15080 ParA family protein K03496 parA; chromosome partitioning protein
D GYM62_01760 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:algo04147]
D GYM62_19510 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D GYM62_14060 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GYM62_06825 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_20815 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GYM62_00765 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GYM62_08920 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GYM62_03150 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D GYM62_15610 peptidase M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GYM62_20215 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GYM62_15945 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D GYM62_10220 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GYM62_13635 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D GYM62_12800 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GYM62_14695 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D GYM62_06985 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17]
D GYM62_18205 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D GYM62_14285 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D GYM62_09840 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GYM62_03565 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D GYM62_08670 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_17460 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D GYM62_18670 Na/Pi cotransporter family protein K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D GYM62_08210 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GYM62_11580 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GYM62_00270 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D GYM62_06930 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GYM62_06960 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GYM62_17050 aminotransferase class V-fold PLP-dependent enzyme K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_17400 aspartate aminotransferase family protein K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D GYM62_02950 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D GYM62_20505 fbp; class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GYM62_17955 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D GYM62_07710 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D GYM62_04500 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D GYM62_19905 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D GYM62_04515 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GYM62_13660 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D GYM62_06295 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GYM62_16795 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D GYM62_06715 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_09850 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_12485 hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GYM62_12885 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GYM62_13045 M48 family metallopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D GYM62_05780 aldo/keto reductase K00002 AKR1A1; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GYM62_00100 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_20180 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GYM62_07520 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D GYM62_20100 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GYM62_16620 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GYM62_18035 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:algo02048]
D GYM62_04730 cas1; type II CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D GYM62_04735 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D GYM62_09070 cas6; CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D GYM62_01940 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D GYM62_09690 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D GYM62_11910 hsdR; type I restriction-modification system endonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D GYM62_14905 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D GYM62_01925 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D GYM62_05995 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D GYM62_09710 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D GYM62_11900 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D GYM62_01920 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D GYM62_05980 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D GYM62_09725 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D GYM62_11905 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D GYM62_14840 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D GYM62_14850 SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D GYM62_06485 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_06515 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYM62_03195 AAA domain-containing protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D GYM62_03190 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D GYM62_19580 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D GYM62_10930 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D GYM62_10935 type II toxin-antitoxin system prevent-host-death family antitoxin K19159 yefM; antitoxin YefM
D GYM62_02120 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_04340 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_13185 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_13190 phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GYM62_16470 type II toxin-antitoxin system RelE/ParE family toxin K19092 parE1_3_4; toxin ParE1/3/4
D GYM62_16475 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
D GYM62_18000 CopG family transcriptional regulator K07746 parD1_3_4; antitoxin ParD1/3/4
D GYM62_20345 type II toxin-antitoxin system HigB family toxin K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D GYM62_20340 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D GYM62_20025 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GYM62_16085 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D GYM62_06115 DNA gyrase/topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GYM62_06110 type IIA DNA topoisomerase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GYM62_15665 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GYM62_07080 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GYM62_17925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:algo04090]
D GYM62_14695 S9 family peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 01504 Antimicrobial resistance genes [BR:algo01504]
D GYM62_19005 GNAT family N-acetyltransferase K18816 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82]
D GYM62_06160 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_11670 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_19955 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D GYM62_15540 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D GYM62_11345 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11985 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_13845 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_15115 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_16210 efflux RND transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D GYM62_11340 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_11980 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_13840 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_15110 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_16205 efflux RND transporter permease subunit K18138 acrB; multidrug efflux pump
D GYM62_11335 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_11975 efflux transporter outer membrane subunit K18139 oprM; outer membrane protein, multidrug efflux system
D GYM62_03030 TolC family protein K12340 tolC; outer membrane protein
D GYM62_05690 TolC family protein K12340 tolC; outer membrane protein
D GYM62_09615 TolC family protein K12340 tolC; outer membrane protein
D GYM62_13720 TolC family protein K12340 tolC; outer membrane protein
D GYM62_15105 TolC family protein K12340 tolC; outer membrane protein
D GYM62_16200 TolC family protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:algo00537]
D GYM62_15610 peptidase M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GYM62_20215 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:algo03100]
D GYM62_00185 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM62_20395 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GYM62_08750 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_13090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_15640 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_20830 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GYM62_11845 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GYM62_09780 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GYM62_02290 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D GYM62_01695 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D GYM62_06830 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM62_06835 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GYM62_14295 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM62_17355 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GYM62_20570 tRNA-His K14226 tRNA-His; tRNA His
D GYM62_00180 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GYM62_00695 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_02645 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_02885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_17350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GYM62_20825 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM62_20840 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GYM62_07230 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM62_09540 tRNA-Ile K14230 tRNA-Met; tRNA Met
D GYM62_15220 tRNA-Met K14230 tRNA-Met; tRNA Met
D GYM62_15465 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D GYM62_03275 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM62_11030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM62_20835 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GYM62_01900 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM62_03270 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM62_13200 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GYM62_07170 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM62_14290 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GYM62_14280 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D GYM62_14300 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D GYM62_20715 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM62_20720 tRNA-Val K14237 tRNA-Val; tRNA Val
D GYM62_00175 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_02680 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_13765 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GYM62_00190 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_02685 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_13760 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GYM62_00195 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_02690 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_13755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GYM62_01835 ffs; signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D GYM62_02605 SDR family NAD(P)-dependent oxidoreductase K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D GYM62_04890 mgrA; L-glyceraldehyde 3-phosphate reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D GYM62_00005 GMC family oxidoreductase K26059 gtd1; glucoside 3-dehydrogenase (cytochrome c) catalytic subunit [EC:1.1.2.11]
D GYM62_19720 GMC family oxidoreductase K26059 gtd1; glucoside 3-dehydrogenase (cytochrome c) catalytic subunit [EC:1.1.2.11]
D GYM62_20500 PQQ-dependent sugar dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D GYM62_04575 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D GYM62_07045 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D GYM62_11830 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D GYM62_04570 xanthine dehydrogenase family protein molybdopterin-binding subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D GYM62_04590 xanthine dehydrogenase family protein molybdopterin-binding subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D GYM62_07050 xanthine dehydrogenase family protein molybdopterin-binding subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D GYM62_11825 xanthine dehydrogenase family protein molybdopterin-binding subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D GYM62_07065 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D GYM62_07405 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D GYM62_18490 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GYM62_19935 ypdA; YpdA family putative bacillithiol disulfide reductase K26960 bdr; bacillithiol disulfide reductase [EC:1.8.1.-]
D GYM62_06675 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D GYM62_12650 msrA; peptide-methionine (S)-S-oxide reductase MsrA K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D GYM62_08845 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D GYM62_05105 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D GYM62_08735 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D GYM62_18350 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D GYM62_18495 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D GYM62_01895 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D GYM62_20190 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D GYM62_08795 beta-carotene 15,15'-dioxygenase, Brp/Blh family K21817 blh; beta-carotene 15,15'-dioxygenase [EC:1.13.11.63]
D GYM62_14445 fatty acid hydroxylase K19703 FA2H; 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase [EC:1.14.18.6]
D GYM62_07615 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D GYM62_06085 glutaredoxin K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D GYM62_03215 protein-tyrosine-phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D GYM62_12085 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D GYM62_07650 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D GYM62_06945 acetylornithine carbamoyltransferase K13043 argF; N-succinyl-L-ornithine transcarbamylase [EC:2.1.3.11]
D GYM62_05090 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D GYM62_09960 GNAT family N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D GYM62_08650 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D GYM62_20520 N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D GYM62_16175 DUF4105 domain-containing protein K27956 lnb; lipoprotein N-acyltransferase [EC:2.3.1.-]
D GYM62_04125 glycosyltransferase K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D GYM62_14440 bshA; N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D GYM62_06195 deoxyhypusine synthase family protein K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D GYM62_08950 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D GYM62_16685 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D GYM62_01325 ltrA; group II intron reverse transcriptase/maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D GYM62_03935 ltrA; group II intron reverse transcriptase/maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D GYM62_05250 ltrA; group II intron reverse transcriptase/maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D GYM62_11020 ltrA; group II intron reverse transcriptase/maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D GYM62_05430 TIGR00159 family protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D GYM62_08335 aceK; bifunctional isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D GYM62_05720 sialate O-acetylesterase K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D GYM62_19185 acetylxylan esterase K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117]
D GYM62_05605 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D GYM62_19140 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D GYM62_00750 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GYM62_02185 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GYM62_08690 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GYM62_16900 capsular biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D GYM62_02610 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D GYM62_04925 hypothetical protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D GYM62_13210 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D GYM62_14750 thermonuclease family protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D GYM62_15580 alpha/beta fold hydrolase K01175 ybfF; esterase [EC:3.1.-.-]
D GYM62_05275 alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139]
D GYM62_09995 pesticidal protein Cry15Aa K21065 E3.2.1.197; beta-1,2-mannosidase [EC:3.2.1.197]
D GYM62_12460 beta-lactamase family protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D GYM62_11465 D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D GYM62_14500 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D GYM62_20765 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D GYM62_01455 acylase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D GYM62_08850 acylase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D GYM62_13220 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D GYM62_07190 bshB1; bacillithiol biosynthesis deacetylase BshB1 K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-]
D GYM62_17575 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D GYM62_16455 AAA domain-containing protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D GYM62_13125 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D GYM62_07145 sugar phosphate isomerase/epimerase K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31]
D GYM62_18650 FKBP-type peptidylprolyl isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D GYM62_07915 methylmalonyl-CoA mutase family protein K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13]
D GYM62_07555 peptidoglycan synthetase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D GYM62_00385 Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D GYM62_00390 NADH:ubiquinone reductase (Na(+)-transporting) subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D GYM62_00395 nqrC; NADH:ubiquinone reductase (Na(+)-transporting) subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D GYM62_00400 NADH:ubiquinone reductase (Na(+)-transporting) subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D GYM62_00405 nqrE; NADH:ubiquinone reductase (Na(+)-transporting) subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D GYM62_16040 NADH:ubiquinone reductase (Na(+)-transporting) subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D GYM62_05660 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D GYM62_08515 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D GYM62_10630 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D GYM62_10700 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D GYM62_11230 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D GYM62_10590 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D GYM62_10645 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D GYM62_01020 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D GYM62_01015 lactate utilization protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D GYM62_01010 L-lactate dehydrogenase K00782 lldG; L-lactate dehydrogenase complex protein LldG
D GYM62_20135 bshC; bacillithiol biosynthesis cysteine-adding enzyme BshC K22136 bshC; bacillithiol synthase
D GYM62_00010 gluconate 2-dehydrogenase subunit 3 family protein K26060 gtd2; glucoside 3-dehydrogenase (cytochrome c) hitch-hiker subunit
D GYM62_19715 gluconate 2-dehydrogenase subunit 3 family protein K26060 gtd2; glucoside 3-dehydrogenase (cytochrome c) hitch-hiker subunit
C 99982 Energy metabolism
D GYM62_07540 zinc-binding dehydrogenase K13955 yogA; zinc-binding alcohol dehydrogenase/oxidoreductase
D GYM62_07525 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
D GYM62_06325 dodecin domain-containing protein K09165 K09165; dodecin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D GYM62_05140 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D GYM62_04870 GNAT family N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D GYM62_14605 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein
D GYM62_18155 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein
D GYM62_18885 flippase-like domain-containing protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
D GYM62_20030 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D GYM62_13905 ring-cleaving dioxygenase K15975 K15975; glyoxalase family protein
D GYM62_15750 DoxX family protein K15977 K15977; putative oxidoreductase
D GYM62_13900 phospholipase K06999 K06999; phospholipase/carboxylesterase
D GYM62_03580 BrxA/BrxB family bacilliredoxin K26958 brxA_B; bacilliredoxin
D GYM62_16725 ytxJ; bacillithiol system redox-active protein YtxJ K26959 brxC; monothiol bacilliredoxin
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D GYM62_02615 cold shock domain-containing protein K03704 cspA; cold shock protein
D GYM62_12685 cold-shock protein K03704 cspA; cold shock protein
D GYM62_04700 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D GYM62_10955 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein
D GYM62_11760 MBL fold metallo-hydrolase K07576 K07576; metallo-beta-lactamase family protein
D GYM62_05390 ligase-associated DNA damage response exonuclease K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D GYM62_20405 ATP-dependent Clp protease adaptor ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D GYM62_02640 tig; trigger factor K03545 tig; trigger factor
D GYM62_11700 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D GYM62_03445 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D GYM62_10815 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D GYM62_03450 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D GYM62_10820 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D GYM62_03080 AIR synthase K04655 hypE; hydrogenase expression/formation protein HypE
D GYM62_03455 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D GYM62_10825 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D GYM62_03440 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF
D GYM62_10810 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF
D GYM62_13530 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D GYM62_04760 2OG-Fe(II) oxygenase K07394 K07394; SM-20-related protein
D GYM62_10020 peptidase K07395 K07395; putative proteasome-type protease
D GYM62_07910 OsmC family protein K07397 yhfA; putative redox protein
D GYM62_08375 nodulation protein NfeD K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D GYM62_20415 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D GYM62_00920 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D GYM62_03500 JAB domain-containing protein K03630 radC; DNA repair protein RadC
D GYM62_07970 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D GYM62_20665 YraN family protein K07460 yraN; putative endonuclease
D GYM62_10510 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D GYM62_20725 GIY-YIG nuclease family protein K07461 K07461; putative endonuclease
D GYM62_08255 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein
D GYM62_00130 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D GYM62_20650 3'-5' exonuclease K07501 K07501; 3'-5' exonuclease
D GYM62_00205 transposase K07483 K07483; transposase
D GYM62_06850 transposase K07483 K07483; transposase
D GYM62_09270 transposase K07483 K07483; transposase
D GYM62_13855 transposase K07483 K07483; transposase
D GYM62_15275 transposase K07483 K07483; transposase
D GYM62_16670 transposase K07483 K07483; transposase
D GYM62_17030 transposase K07483 K07483; transposase
D GYM62_17390 transposase K07483 K07483; transposase
D GYM62_19530 transposase K07483 K07483; transposase
D GYM62_03875 tnpB; IS66 family insertion sequence element accessory protein TnpB K07484 K07484; transposase
D GYM62_09235 tnpB; IS66 family insertion sequence element accessory protein TnpB K07484 K07484; transposase
D GYM62_16065 IS110 family transposase K07486 K07486; transposase
D GYM62_00035 transposase K07491 rayT; REP-associated tyrosine transposase
D GYM62_00090 transposase K07491 rayT; REP-associated tyrosine transposase
D GYM62_00690 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D GYM62_04725 transposase K07491 rayT; REP-associated tyrosine transposase
D GYM62_05025 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D GYM62_09075 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D GYM62_05990 IS3 family transposase K07497 K07497; putative transposase
D GYM62_06750 DDE-type integrase/transposase/recombinase K07497 K07497; putative transposase
D GYM62_06845 IS3 family transposase K07497 K07497; putative transposase
D GYM62_09250 IS3 family transposase K07497 K07497; putative transposase
D GYM62_09575 DDE-type integrase/transposase/recombinase K07497 K07497; putative transposase
D GYM62_11245 IS3 family transposase K07497 K07497; putative transposase
D GYM62_11280 IS3 family transposase K07497 K07497; putative transposase
D GYM62_11835 DDE-type integrase/transposase/recombinase K07497 K07497; putative transposase
D GYM62_13375 transposase family protein K07497 K07497; putative transposase
D GYM62_13860 IS3 family transposase K07497 K07497; putative transposase
D GYM62_15270 IS3 family transposase K07497 K07497; putative transposase
D GYM62_15495 hypothetical protein K07497 K07497; putative transposase
D GYM62_17025 IS3 family transposase K07497 K07497; putative transposase
D GYM62_17385 IS3 family transposase K07497 K07497; putative transposase
D GYM62_19535 IS3 family transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D GYM62_01595 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
D GYM62_17215 DASH family cryptochrome K25656 cry; cryptochrome
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D GYM62_09925 formate/nitrite transporter family protein K21990 yfdC; formate-nitrite transporter family protein
D GYM62_13170 MFS transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D GYM62_06350 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D GYM62_07715 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D GYM62_02525 citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D GYM62_06140 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D GYM62_05705 sodium/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D GYM62_09825 sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D GYM62_13280 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D GYM62_17560 Na+:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D GYM62_13465 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D GYM62_02955 alanine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D GYM62_06215 alanine:cation symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D GYM62_06305 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D GYM62_07510 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D GYM62_12075 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D GYM62_12100 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D GYM62_20755 hemerythrin HHE cation-binding protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D GYM62_11405 peptidoglycan DD-metalloendopeptidase family protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D GYM62_12855 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D GYM62_00710 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D GYM62_18955 PhoH family protein K07175 phoH2; PhoH-like ATPase
D GYM62_01385 CBS domain-containing protein K07182 K07182; CBS domain-containing protein
D GYM62_16710 CBS domain-containing protein K07182 K07182; CBS domain-containing protein
C 99992 Structural proteins
D GYM62_06190 OmpH family outer membrane protein K06142 hlpA; outer membrane protein
D GYM62_15995 OmpH family outer membrane protein K06142 hlpA; outer membrane protein
D GYM62_16000 OmpH family outer membrane protein K06142 hlpA; outer membrane protein
D GYM62_05685 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D GYM62_09670 efflux RND transporter periplasmic adaptor subunit K02005 ABC.CD.TX; HlyD family secretion protein
D GYM62_09440 SusF/SusE family outer membrane protein K21571 susE_F; starch-binding outer membrane protein SusE/F
C 99994 Others
D GYM62_01640 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D GYM62_01735 apaG; Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein
D GYM62_12050 nosD; nitrous oxide reductase family maturation protein NosD K07218 nosD; nitrous oxidase accessory protein
D GYM62_14665 hemin-degrading factor K07225 hmuS; putative hemin transport protein
D GYM62_12055 nitrous oxide reductase K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D GYM62_15565 CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D GYM62_06415 GNAT family N-acetyltransferase K02348 elaA; ElaA protein
D GYM62_18065 tRNA-binding protein K06878 K06878; tRNA-binding protein
D GYM62_08380 cyanoglobin K06886 glbN; hemoglobin
D GYM62_09940 group III truncated hemoglobin K06886 glbN; hemoglobin
D GYM62_09765 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D GYM62_15100 patatin K07001 K07001; NTE family protein
D GYM62_17195 phospholipase K07001 K07001; NTE family protein
D GYM62_17605 cyclic nucleotide-binding domain-containing protein K07001 K07001; NTE family protein
D GYM62_00065 noncanonical pyrimidine nucleotidase, YjjG family K07025 K07025; putative hydrolase of the HAD superfamily
D GYM62_03060 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D GYM62_03610 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D GYM62_03600 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D GYM62_02180 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein
D GYM62_03590 SufE family protein K02426 sufE; cysteine desulfuration protein SufE
D GYM62_14570 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
D GYM62_01840 VOC family protein K04750 phnB; PhnB protein
D GYM62_01065 heme-binding protein K11477 glcG; glc operon protein GlcG
D GYM62_18615 LemA family protein K03744 lemA; LemA protein
D GYM62_06170 phage holin family protein K08972 K08972; putative membrane protein
D GYM62_16880 DUF368 domain-containing protein K08974 K08974; putative membrane protein
D GYM62_02365 DUF420 domain-containing protein K08976 K08976; putative membrane protein
D GYM62_10670 SHOCT domain-containing protein K08982 K08982; putative membrane protein
D GYM62_13535 DUF2214 family protein K08983 K08983; putative membrane protein
D GYM62_17250 DUF1304 domain-containing protein K08987 K08987; putative membrane protein
C 99997 Function unknown
D GYM62_02090 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D GYM62_19065 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein
D GYM62_18625 TPM domain-containing protein K06872 K06872; uncharacterized protein
D GYM62_02800 HD domain-containing protein K06885 K06885; uncharacterized protein
D GYM62_11100 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein
D GYM62_17750 ATP-binding protein K06926 K06926; uncharacterized protein
D GYM62_06090 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D GYM62_18160 zinc metallopeptidase K06973 K06973; uncharacterized protein
D GYM62_10255 N-acetyltransferase K06975 K06975; uncharacterized protein
D GYM62_02945 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein
D GYM62_06265 succinylglutamate desuccinylase K06987 K06987; uncharacterized protein
D GYM62_17200 glyoxalase K06991 K06991; uncharacterized protein
D GYM62_01000 VOC family protein K06996 K06996; uncharacterized protein
D GYM62_03640 MMPL family transporter K07003 K07003; uncharacterized protein
D GYM62_06330 T9SS type A sorting domain-containing protein K07004 K07004; uncharacterized protein
D GYM62_04845 alpha/beta fold hydrolase K07019 K07019; uncharacterized protein
D GYM62_07285 alpha/beta fold hydrolase K07019 K07019; uncharacterized protein
D GYM62_19285 amidohydrolase K07045 K07045; uncharacterized protein
D GYM62_19215 hydrolase TatD K07051 K07051; uncharacterized protein
D GYM62_08160 flagellar biosynthesis protein FlgM K07054 K07054; uncharacterized protein
D GYM62_18865 TIGR01777 family protein K07071 K07071; uncharacterized protein
D GYM62_11185 nucleotidyltransferase family protein K07075 K07075; uncharacterized protein
D GYM62_12605 nucleotidyltransferase K07075 K07075; uncharacterized protein
D GYM62_13310 sodium-dependent bicarbonate transport family permease K07086 K07086; uncharacterized protein
D GYM62_04630 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D GYM62_08100 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D GYM62_01580 metallophosphoesterase family protein K07095 K07095; uncharacterized protein
D GYM62_00890 metallophosphoesterase K07098 K07098; uncharacterized protein
D GYM62_12725 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D GYM62_12730 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D GYM62_19690 SDR family NAD(P)-dependent oxidoreductase K07124 K07124; uncharacterized protein
D GYM62_00335 ATP-binding protein K07133 K07133; uncharacterized protein
D GYM62_00875 AAA family ATPase K07133 K07133; uncharacterized protein
D GYM62_14370 ATP-binding protein K07133 K07133; uncharacterized protein
D GYM62_14490 ATP-binding protein K07133 K07133; uncharacterized protein
D GYM62_14600 ATP-binding protein K07133 K07133; uncharacterized protein
D GYM62_15395 ATP-binding protein K07133 K07133; uncharacterized protein
D GYM62_15415 ATP-binding protein K07133 K07133; uncharacterized protein
D GYM62_18570 ATP-binding protein K07133 K07133; uncharacterized protein
D GYM62_19145 AAA family ATPase K07133 K07133; uncharacterized protein
D GYM62_19855 AAA family ATPase K07133 K07133; uncharacterized protein
D GYM62_09100 FAD-binding protein K07137 K07137; uncharacterized protein
D GYM62_13630 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D GYM62_04425 hypothetical protein K07164 K07164; uncharacterized protein
D GYM62_08955 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D GYM62_07515 bifunctional nuclease family protein K08999 K08999; uncharacterized protein
D GYM62_10840 bifunctional nuclease family protein K08999 K08999; uncharacterized protein
D GYM62_15570 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein
D GYM62_16800 DUF493 family protein K09158 K09158; uncharacterized protein
D GYM62_00925 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D GYM62_06380 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D GYM62_16440 cupin domain-containing protein K09705 K09705; uncharacterized protein
D GYM62_12845 hypothetical protein K09780 K09780; uncharacterized protein
D GYM62_13035 DUF808 domain-containing protein K09781 K09781; uncharacterized protein
D GYM62_02735 sulfite exporter TauE/SafE family protein K09792 K09792; uncharacterized protein
D GYM62_18370 SIMPL domain-containing protein K09797 K09797; uncharacterized protein
D GYM62_05655 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D GYM62_06080 RNA-binding protein K00243 K00243; uncharacterized protein
D GYM62_13060 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D GYM62_01875 DUF2064 domain-containing protein K09931 K09931; uncharacterized protein
D GYM62_06805 glycosyltransferase K09931 K09931; uncharacterized protein
D GYM62_13175 DUF3820 family protein K09954 K09954; uncharacterized protein
D GYM62_08555 TraB/GumN family protein K09973 K09973; uncharacterized protein
D GYM62_05770 ThuA domain-containing protein K09992 K09992; uncharacterized protein
D GYM62_20055 ThuA domain-containing protein K09992 K09992; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: August 7, 2026