+D Transcription factors KO #

  Transcription Factors - Amycolatopsis mediterranei U32

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D AMED_0354 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D AMED_6151 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D AMED_9225 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AMED_3563 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AMED_5989 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AMED_6885 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AMED_7338 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AMED_4917 alkA; adenosine deaminase/DNA-3-methyladenine glycosylase/8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D AMED_8048 alkA; adenosine deaminase/DNA-3-methyladenine glycosylase/8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D AMED_7650 AraC family transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D AMED_7695 AraC family transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA C LysR family D AMED_6245 iciA; LysR family transcriptional regulator K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator C DeoR family D AMED_3918 agaR; DeoR family transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D AMED_4502 fruR; DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D AMED_1595 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_2440 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_2619 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_3406 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_3423 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_4088 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_4427 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_4508 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_4538 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_4598 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_5072 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_5250 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_5773 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_5777 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_6102 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_6937 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_7415 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_9139 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AMED_9140 lacI; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D AMED_2726 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D AMED_8583 GntR family transcriptional regulator K24969 dasR; GntR family transcriptional regulator, nutrient-sensing system regulator D AMED_1372 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AMED_2563 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AMED_3313 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AMED_7276 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AMED_8992 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AMED_1581 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AMED_1741 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AMED_2032 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AMED_2403 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AMED_4173 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AMED_7011 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AMED_7541 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AMED_8341 GntR family transcriptional regulator fused with aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D AMED_3704 TetR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D AMED_2110 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AMED_6420 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AMED_4972 TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D AMED_2501 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D AMED_6218 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D AMED_4236 asnC; Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D AMED_8979 asnC; Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D AMED_0265 lrp; Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AMED_0503 lrp; Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AMED_0660 lrp; Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AMED_1222 lrp; Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AMED_4872 lrp; Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AMED_5857 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AMED_7741 lrp; Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D AMED_3903 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D AMED_6465 malT; LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D AMED_5633 slyA; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D AMED_0315 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D AMED_2947 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D AMED_3434 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D AMED_4629 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D AMED_2261 MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D AMED_3010 MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D AMED_9163 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D AMED_0765 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D AMED_3119 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D AMED_4083 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D AMED_4467 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D AMED_6609 fur; Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AMED_4106 fur; Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator C IclR family D AMED_1910 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D AMED_1864 pcaR; IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D AMED_4851 pcaR; IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D AMED_6090 fnr; CRP/FNR family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AMED_8832 fnr; CRP/FNR family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family C ArsR family D AMED_0760 arsR; ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AMED_3321 ArsR family transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D AMED_2980 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D AMED_6608 arsR; ArsR family transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D AMED_1637 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D AMED_6281 XRE family transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator C PadR family D AMED_1055 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D AMED_1803 padR; PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D AMED_2416 troR; Mn-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D AMED_8394 troR; Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D AMED_0973 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AMED_4322 Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AMED_0479 rex; AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor D AMED_0904 conserved hypothetical protein K27097 espR; ESX-1-secreted protein regulator D AMED_1799 conserved hypothetical protein K27097 espR; ESX-1-secreted protein regulator D AMED_4558 conserved hypothetical protein K27097 espR; ESX-1-secreted protein regulator D AMED_7104 conserved hypothetical protein K27097 espR; ESX-1-secreted protein regulator D AMED_7527 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator D AMED_2016 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D AMED_7067 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D AMED_8420 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D AMED_0291 transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D AMED_0764 transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D AMED_6374 transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D AMED_7971 transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D AMED_8019 transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D AMED_8852 transcriptional regulator WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D AMED_1235 transcriptional regulator WhiB K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D AMED_6896 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D AMED_6636 pucR; PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D AMED_6875 SARP family transcriptional regulator K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D AMED_7291 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AMED_9359 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AMED_8678 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D AMED_6039 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D AMED_6629 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D AMED_4050 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D AMED_4060 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D AMED_5047 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D AMED_6966 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D AMED_8364 paaX; PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D AMED_2745 pyrR; pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D AMED_1167 paiB; transcriptional regulator PaiB K07734 paiB; transcriptional regulator D AMED_9333 putative transcriptional regulator K07735 algH; putative transcriptional regulator D AMED_2393 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D AMED_6261 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 3, 2025 #
Classification taken and modified from TRANSFAC 7.0