+F Repair protein KO #

  DNA Repair and Recombination Proteins - Aeromonas media

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D B224_4601 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B224_4245 methylated-DNA-[protein]-cysteineS-methyltransfe rase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B224_4184 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E B224_1051 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E B224_0248 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E B224_1448 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D B224_0106 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_5215 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_5816 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_2469 NUDIX family protein, MutT subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_5255 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D B224_4601 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B224_4245 methylated-DNA-[protein]-cysteineS-methyltransfe rase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B224_4184 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D B224_1984 Cryptochrome/photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E B224_1051 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E B224_4244 DNA methylation and regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E B224_0248 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E B224_5653 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E B224_5249 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E B224_1448 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E B224_1346 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E B224_2087 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E B224_1005 RecJ single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E B224_3995 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E B224_5732 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E B224_4893 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E B224_2027 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E B224_3081 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E B224_5443 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B224_5732 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E B224_3995 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F B224_4997 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F B224_4994 DNA-directed RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F B224_5576 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F B224_5301 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F B224_2583 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E B224_4725 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E B224_4389 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E B224_4570 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E B224_1695 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E B224_2615 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E B224_0840 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E B224_4044 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E B224_5349 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E B224_4706 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E B224_0983 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E B224_2299 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E B224_2557 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E B224_3598 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E B224_2233 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E B224_5784 hypothetical protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E B224_1717 hypothetical protein K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E B224_3995 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E B224_5443 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B224_4895 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E B224_1925 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E B224_1697 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E B224_p00028 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E B224_0892 DNA adenine methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E B224_4923 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E B224_4926 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E B224_4920 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E B224_4721 recombinase A K03553 recA; recombination protein RecA E B224_5851 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E B224_5849 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E B224_3888 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E B224_1719 endodeoxyribonuclease RUS K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E B224_5192 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E B224_0535 hypothetical protein K02317 dnaT; DNA replication protein DnaT E B224_1695 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E B224_3796 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E B224_3798 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E B224_4721 recombinase A K03553 recA; recombination protein RecA E B224_4647 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E B224_5348 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E B224_5522 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E B224_3754 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E B224_1005 RecJ single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E B224_0390 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E B224_1612 recombination protein RecR K06187 recR; recombination protein RecR E B224_1297 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E B224_3801 recombination associated protein K03554 rdgC; recombination associated protein RdgC E B224_5851 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E B224_5849 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E B224_3888 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E B224_1474 putative helicase, ATP-dependent K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E B224_3796 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E B224_3798 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E B224_3169 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F B224_2381 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F B224_5347 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F B224_1107 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F B224_4643 DNA-binding protein HU alpha K05787 hupA; DNA-binding protein HU-alpha F B224_2565 nucleoid DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F B224_1005 RecJ single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F B224_0390 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F B224_1612 recombination protein RecR K06187 recR; recombination protein RecR F B224_3995 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F B224_0522 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F B224_2366 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F B224_1857 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F B224_1695 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F B224_2039 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F B224_5138 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F B224_4893 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F B224_2027 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F B224_3124 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS F B224_1872 histone-like nucleoid structuring protein K03746 hns; DNA-binding protein H-NS F B224_1286 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D B224_4105 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D B224_1926 protein UmuC K03502 umuC; DNA polymerase V D B224_1927 protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D B224_4721 recombinase A K03553 recA; recombination protein RecA D B224_5716 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D B224_1297 recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D B224_2101 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D B224_4895 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D B224_1925 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D B224_1697 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D B224_p00028 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D B224_1788 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D B224_4719 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D B224_5687 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D B224_3179 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D B224_2214 ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D B224_0106 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_5215 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_5816 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_2469 NUDIX family protein, MutT subfamily K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B224_5255 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D B224_4480 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D B224_2385 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D B224_2387 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024