+F Repair protein KO #

  DNA Repair and Recombination Proteins - Anaplasma marginale Florida

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E AMF_274 nth; endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AMF_598 dut; deoxyuridine 5'triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E AMF_934 Conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AMF_570 fpg; formamidopyrimidine-DNA glycosylase (fpg) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AMF_274 nth; endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AMF_441 xthA2; exodeoxyribonuclease III (xthA2) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AMF_856 recJ; single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E AMF_335 uvrA; excinuclease ABC subunit A (uvrA) K03701 uvrA; excinuclease ABC subunit A E AMF_941 uvrB; excinuclease ABC subunit B (uvrB) K03702 uvrB; excinuclease ABC subunit B E AMF_280 uvrC; excinuclease ABC subunit C (uvrC) K03703 uvrC; excinuclease ABC subunit C E AMF_271 uvrD; DNA helicase II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AMF_194 rpoB; RNA polymerase beta subunit (rpoB) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AMF_195 rpoC; DNA-directed RNA polymerase beta' chain (rpoC) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AMF_672 rpoA; DNA-directed RNA polymerase alpha chain (rpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AMF_324 rpoZ; DNA-directed RNA polymerase omega subunit (rpoZ) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AMF_091 mfd; transcription repair coupling factor (mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AMF_301 mutS; DNA mismatch repair protein (mutS) K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E AMF_248 mutL; DNA mismatch repair protein (mutL) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AMF_1006 xseA; exodeoxyribonuclease large subunit (xseA) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AMF_068 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AMF_213 dnaE; DNA polymerase III, alpha subunit (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AMF_773 dnaN; DNA polymerase III beta chain (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AMF_894 holA; Putative DNA polymerase III delta subunit (holA) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AMF_319 dnaX; DNA polymerase III subunit gamma K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AMF_467 dnaQ; DNA polymerase III, epsilon chain (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMF_967 dnaZ; DNA polymerase III gamma subunit (dnaZ) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AMF_271 uvrD; DNA helicase II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMF_310 ssb; single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AMF_061 recA; recA protein (recA) K03553 recA; recombination protein RecA E AMF_130 ruvA; Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E AMF_129 ruvB; Holliday junction DNA helicase (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMF_981 ruvC; holliday (crossover) junction endodeoxyribonuclease (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AMF_618 priA; primosomal protein N' (priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AMF_802 msp3; major surface protein 3 (MSP3) K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E AMF_061 recA; recA protein (recA) K03553 recA; recombination protein RecA E AMF_116 radA; DNA repair protein (radA) K04485 radA; DNA repair protein RadA/Sms E AMF_917 recF; RECF protein (recF) K03629 recF; DNA replication and repair protein RecF E AMF_1012 recG; ATP-dependent DNA helicase (recG) K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AMF_856 recJ; single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AMF_511 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AMF_286 recR; recombination protein (recR) K06187 recR; recombination protein RecR E AMF_130 ruvA; Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E AMF_129 ruvB; Holliday junction DNA helicase (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMF_981 ruvC; holliday (crossover) junction endodeoxyribonuclease (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E AMF_711 recB; Putative exodeoxyribonuclease V beta chain K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E AMF_308 Conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E AMF_802 msp3; major surface protein 3 (MSP3) K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AMF_273 gyrA; DNA gyrase subunit A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AMF_480 gyrB2; DNA gyrase subunit B (gyrB2) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AMF_373 topA; DNA topoisomerase I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AMF_1041 hupB; Histone-like bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AMF_856 recJ; single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AMF_511 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AMF_286 recR; recombination protein (recR) K06187 recR; recombination protein RecR F AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F AMF_006 ihfA; presumptive integration host factor alpha-subunit (ihfA) K04764 ihfA; integration host factor subunit alpha E Supressor F AMF_335 uvrA; excinuclease ABC subunit A (uvrA) K03701 uvrA; excinuclease ABC subunit A F AMF_941 uvrB; excinuclease ABC subunit B (uvrB) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D AMF_061 recA; recA protein (recA) K03553 recA; recombination protein RecA D AMF_310 ssb; single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D AMF_598 dut; deoxyuridine 5'triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AMF_644 nrdA; ribonuclease-diphosphate reductase alpha chain (nrdA) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMF_355 nrdB; ribonuceoside-diphosphate reductase beta chain (nrdB) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024