+F Repair protein KO
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DNA Repair and Recombination Proteins - Anaplasma marginale Florida
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E AMF_274 nth; endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AMF_598 dut; deoxyuridine 5'triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E AMF_934 Conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AMF_570 fpg; formamidopyrimidine-DNA glycosylase (fpg) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AMF_274 nth; endonuclease III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AMF_441 xthA2; exodeoxyribonuclease III (xthA2) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E AMF_856 recJ; single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AMF_335 uvrA; excinuclease ABC subunit A (uvrA) K03701 uvrA; excinuclease ABC subunit A
E AMF_941 uvrB; excinuclease ABC subunit B (uvrB) K03702 uvrB; excinuclease ABC subunit B
E AMF_280 uvrC; excinuclease ABC subunit C (uvrC) K03703 uvrC; excinuclease ABC subunit C
E AMF_271 uvrD; DNA helicase II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AMF_194 rpoB; RNA polymerase beta subunit (rpoB) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AMF_195 rpoC; DNA-directed RNA polymerase beta' chain (rpoC) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AMF_672 rpoA; DNA-directed RNA polymerase alpha chain (rpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AMF_324 rpoZ; DNA-directed RNA polymerase omega subunit (rpoZ) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AMF_091 mfd; transcription repair coupling factor (mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AMF_301 mutS; DNA mismatch repair protein (mutS) K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E AMF_248 mutL; DNA mismatch repair protein (mutL) K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E AMF_1006 xseA; exodeoxyribonuclease large subunit (xseA) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E AMF_068 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E AMF_213 dnaE; DNA polymerase III, alpha subunit (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AMF_773 dnaN; DNA polymerase III beta chain (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AMF_894 holA; Putative DNA polymerase III delta subunit (holA) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AMF_319 dnaX; DNA polymerase III subunit gamma K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AMF_467 dnaQ; DNA polymerase III, epsilon chain (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AMF_967 dnaZ; DNA polymerase III gamma subunit (dnaZ) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AMF_271 uvrD; DNA helicase II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMF_310 ssb; single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AMF_061 recA; recA protein (recA) K03553 recA; recombination protein RecA
E AMF_130 ruvA; Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA
E AMF_129 ruvB; Holliday junction DNA helicase (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AMF_981 ruvC; holliday (crossover) junction endodeoxyribonuclease (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E AMF_618 priA; primosomal protein N' (priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AMF_802 msp3; major surface protein 3 (MSP3) K03546 sbcC; DNA repair protein SbcC/Rad50
D RecFOR pathway proteins
E AMF_061 recA; recA protein (recA) K03553 recA; recombination protein RecA
E AMF_116 radA; DNA repair protein (radA) K04485 radA; DNA repair protein RadA/Sms
E AMF_917 recF; RECF protein (recF) K03629 recF; DNA replication and repair protein RecF
E AMF_1012 recG; ATP-dependent DNA helicase (recG) K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AMF_856 recJ; single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AMF_511 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AMF_286 recR; recombination protein (recR) K06187 recR; recombination protein RecR
E AMF_130 ruvA; Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA
E AMF_129 ruvB; Holliday junction DNA helicase (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AMF_981 ruvC; holliday (crossover) junction endodeoxyribonuclease (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E AMF_711 recB; Putative exodeoxyribonuclease V beta chain K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E AMF_308 Conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E AMF_802 msp3; major surface protein 3 (MSP3) K03546 sbcC; DNA repair protein SbcC/Rad50
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AMF_273 gyrA; DNA gyrase subunit A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AMF_480 gyrB2; DNA gyrase subunit B (gyrB2) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AMF_373 topA; DNA topoisomerase I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F AMF_1041 hupB; Histone-like bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AMF_856 recJ; single-stranded-DNA-specific exonuclease (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AMF_511 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AMF_286 recR; recombination protein (recR) K06187 recR; recombination protein RecR
F AMF_112 ligA; DNA ligase (ligA) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F AMF_006 ihfA; presumptive integration host factor alpha-subunit (ihfA) K04764 ihfA; integration host factor subunit alpha
E Supressor
F AMF_335 uvrA; excinuclease ABC subunit A (uvrA) K03701 uvrA; excinuclease ABC subunit A
F AMF_941 uvrB; excinuclease ABC subunit B (uvrB) K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D AMF_061 recA; recA protein (recA) K03553 recA; recombination protein RecA
D AMF_310 ssb; single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D AMF_598 dut; deoxyuridine 5'triphosphate nucleotidohydrolase (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AMF_644 nrdA; ribonuclease-diphosphate reductase alpha chain (nrdA) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AMF_355 nrdB; ribonuceoside-diphosphate reductase beta chain (nrdB) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024