+F Repair protein KO
#
DNA Repair and Recombination Proteins - Acaryochloris marina
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AM1_0697 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AM1_4149 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AM1_3918 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AM1_4064 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AM1_1353 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_0003 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_4549 MutT/nudix hydroxylase family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_4515 NUDIX/MutT family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_1160 ADP-ribose pyrophosphatase (NUDIX hydroxylase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_5223 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AM1_C0050 methylated DNA-protein cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AM1_4991 methylated DNA-protein cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AM1_0697 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D AM1_5696 deoxyribodipyrimidine photolyase-related protein, putative K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E AM1_4149 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AM1_4059 DNA polymerase bacteriophage-type, putative K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AM1_3918 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AM1_4494 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AM1_2501 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AM1_0649 Endonuclease VIII (DNA glycosylase/AP lyase Nei) K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E AM1_4064 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AM1_5260 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E AM1_0784 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
E AM1_0329 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E AM1_2891 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AM1_5599 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AM1_2163 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E AM1_5529 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
E AM1_1116 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E AM1_1428 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AM1_4376 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AM1_3592 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AM1_3593 rpoC1; DNA-directed RNA polymerase, gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AM1_3594 rpoC2; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AM1_1253 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AM1_2264 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AM1_4147 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AM1_5596 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E AM1_3455 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E AM1_3452 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E AM1_3344 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E AM1_3343 conserved hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E AM1_0744 dnaE; DNA polymerase III alpha subunit, putative K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AM1_2512 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AM1_3096 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AM1_3663 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AM1_6040 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AM1_2401 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AM1_2292 dnaX; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AM1_1428 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AM1_4376 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AM1_A0335 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
E AM1_3161 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
E AM1_3079 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E AM1_5873 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AM1_B0413 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E AM1_A0091 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E AM1_5034 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E AM1_5483 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_3550 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_A0092 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_5031 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_B0414 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_D0276 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_E0124 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_2883 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AM1_4753 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AM1_5256 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E AM1_0284 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AM1_F0057 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AM1_2823 RecF/RecN/SMC N-terminal domain protein, putative K03546 sbcC; DNA repair protein SbcC/Rad50
E AM1_3223 Ser/Thr protein phosphatase family protein, putative K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E AM1_5483 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_3550 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_A0092 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_5031 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_B0414 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_D0276 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_E0124 recA; protein RecA K03553 recA; recombination protein RecA
E AM1_5662 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E AM1_1675 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E AM1_5225 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AM1_2891 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AM1_5599 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AM1_4634 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AM1_3917 recR; recombination protein RecR K06187 recR; recombination protein RecR
E AM1_2766 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E AM1_2883 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AM1_4753 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AM1_5256 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E AM1_2823 RecF/RecN/SMC N-terminal domain protein, putative K03546 sbcC; DNA repair protein SbcC/Rad50
E AM1_3223 Ser/Thr protein phosphatase family protein, putative K03547 sbcD; DNA repair protein SbcD/Mre11
E AM1_H0068 dead/deah box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AM1_3113 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AM1_5737 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AM1_4499 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AM1_2043 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F AM1_D0087 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F AM1_4872 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F AM1_5906 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F AM1_6173 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F AM1_C0338 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F AM1_A0353 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F AM1_C0360 hypothetical protein K03530 hupB; DNA-binding protein HU-beta
F AM1_1154 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F AM1_B0086 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F AM1_C0353 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AM1_2891 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AM1_5599 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AM1_4634 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AM1_3917 recR; recombination protein RecR K06187 recR; recombination protein RecR
F AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F AM1_5591 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AM1_5150 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AM1_2163 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F AM1_5529 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AM1_5486 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D AM1_B0315 umuC; DNA polymerase V, putative K03502 umuC; DNA polymerase V
D AM1_G0159 umuC; DNA polymerase V, putative K03502 umuC; DNA polymerase V
D AM1_2529 umuC; DNA polymerase V, putative K03502 umuC; DNA polymerase V
D AM1_B0314 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AM1_G0158 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AM1_B0196 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AM1_2528 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D AM1_5483 recA; protein RecA K03553 recA; recombination protein RecA
D AM1_3550 recA; protein RecA K03553 recA; recombination protein RecA
D AM1_A0092 recA; protein RecA K03553 recA; recombination protein RecA
D AM1_5031 recA; protein RecA K03553 recA; recombination protein RecA
D AM1_B0414 recA; protein RecA K03553 recA; recombination protein RecA
D AM1_D0276 recA; protein RecA K03553 recA; recombination protein RecA
D AM1_E0124 recA; protein RecA K03553 recA; recombination protein RecA
D AM1_3948 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D AM1_2766 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D AM1_A0335 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D AM1_3161 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D AM1_2931 conserved hypothetical protein, possible DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D AM1_3868 DEAD/DEAH box RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D AM1_1353 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_0003 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_4549 MutT/nudix hydroxylase family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_4515 NUDIX/MutT family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_1160 ADP-ribose pyrophosphatase (NUDIX hydroxylase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AM1_5223 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AM1_F0047 nrdA; ribonucleotide-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AM1_2383 nrd; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AM1_F0048 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024