+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acaryochloris marina

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AM1_0697 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AM1_4149 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AM1_3918 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AM1_4064 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AM1_1353 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_0003 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_4549 MutT/nudix hydroxylase family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_4515 NUDIX/MutT family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_1160 ADP-ribose pyrophosphatase (NUDIX hydroxylase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_5223 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AM1_C0050 methylated DNA-protein cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AM1_4991 methylated DNA-protein cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AM1_0697 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AM1_5696 deoxyribodipyrimidine photolyase-related protein, putative K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E AM1_4149 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AM1_4059 DNA polymerase bacteriophage-type, putative K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AM1_3918 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AM1_4494 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AM1_2501 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AM1_0649 Endonuclease VIII (DNA glycosylase/AP lyase Nei) K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E AM1_4064 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AM1_5260 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AM1_0784 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] E AM1_0329 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E AM1_2891 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AM1_5599 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E AM1_2163 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E AM1_5529 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E AM1_1116 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E AM1_1428 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AM1_4376 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AM1_3592 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AM1_3593 rpoC1; DNA-directed RNA polymerase, gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AM1_3594 rpoC2; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AM1_1253 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AM1_2264 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AM1_4147 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AM1_5596 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E AM1_3455 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E AM1_3452 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AM1_3344 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AM1_3343 conserved hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AM1_0744 dnaE; DNA polymerase III alpha subunit, putative K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AM1_2512 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AM1_3096 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AM1_3663 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AM1_6040 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AM1_2401 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AM1_2292 dnaX; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AM1_1428 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AM1_4376 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AM1_A0335 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein E AM1_3161 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein E AM1_3079 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E AM1_5873 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AM1_B0413 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AM1_A0091 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AM1_5034 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AM1_5483 recA; protein RecA K03553 recA; recombination protein RecA E AM1_3550 recA; protein RecA K03553 recA; recombination protein RecA E AM1_A0092 recA; protein RecA K03553 recA; recombination protein RecA E AM1_5031 recA; protein RecA K03553 recA; recombination protein RecA E AM1_B0414 recA; protein RecA K03553 recA; recombination protein RecA E AM1_D0276 recA; protein RecA K03553 recA; recombination protein RecA E AM1_E0124 recA; protein RecA K03553 recA; recombination protein RecA E AM1_2883 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AM1_4753 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AM1_5256 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AM1_0284 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AM1_F0057 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AM1_2823 RecF/RecN/SMC N-terminal domain protein, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E AM1_3223 Ser/Thr protein phosphatase family protein, putative K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AM1_5483 recA; protein RecA K03553 recA; recombination protein RecA E AM1_3550 recA; protein RecA K03553 recA; recombination protein RecA E AM1_A0092 recA; protein RecA K03553 recA; recombination protein RecA E AM1_5031 recA; protein RecA K03553 recA; recombination protein RecA E AM1_B0414 recA; protein RecA K03553 recA; recombination protein RecA E AM1_D0276 recA; protein RecA K03553 recA; recombination protein RecA E AM1_E0124 recA; protein RecA K03553 recA; recombination protein RecA E AM1_5662 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AM1_1675 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E AM1_5225 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AM1_2891 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AM1_5599 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AM1_4634 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AM1_3917 recR; recombination protein RecR K06187 recR; recombination protein RecR E AM1_2766 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AM1_2883 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AM1_4753 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AM1_5256 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E AM1_2823 RecF/RecN/SMC N-terminal domain protein, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E AM1_3223 Ser/Thr protein phosphatase family protein, putative K03547 sbcD; DNA repair protein SbcD/Mre11 E AM1_H0068 dead/deah box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AM1_3113 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AM1_5737 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AM1_4499 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AM1_2043 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AM1_D0087 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AM1_4872 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AM1_5906 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F AM1_6173 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F AM1_C0338 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F AM1_A0353 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F AM1_C0360 hypothetical protein K03530 hupB; DNA-binding protein HU-beta F AM1_1154 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F AM1_B0086 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F AM1_C0353 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AM1_2891 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AM1_5599 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AM1_4634 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AM1_3917 recR; recombination protein RecR K06187 recR; recombination protein RecR F AM1_1187 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F AM1_5591 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AM1_5150 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AM1_2163 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F AM1_5529 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AM1_5486 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AM1_B0315 umuC; DNA polymerase V, putative K03502 umuC; DNA polymerase V D AM1_G0159 umuC; DNA polymerase V, putative K03502 umuC; DNA polymerase V D AM1_2529 umuC; DNA polymerase V, putative K03502 umuC; DNA polymerase V D AM1_B0314 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-] D AM1_G0158 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-] D AM1_B0196 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-] D AM1_2528 umuD; SOS mutagenesis protein UmuD, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D AM1_5483 recA; protein RecA K03553 recA; recombination protein RecA D AM1_3550 recA; protein RecA K03553 recA; recombination protein RecA D AM1_A0092 recA; protein RecA K03553 recA; recombination protein RecA D AM1_5031 recA; protein RecA K03553 recA; recombination protein RecA D AM1_B0414 recA; protein RecA K03553 recA; recombination protein RecA D AM1_D0276 recA; protein RecA K03553 recA; recombination protein RecA D AM1_E0124 recA; protein RecA K03553 recA; recombination protein RecA D AM1_3948 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D AM1_2766 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AM1_A0335 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D AM1_3161 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AM1_2931 conserved hypothetical protein, possible DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D AM1_3868 DEAD/DEAH box RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AM1_1353 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_0003 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_4549 MutT/nudix hydroxylase family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_4515 NUDIX/MutT family protein, putative K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_1160 ADP-ribose pyrophosphatase (NUDIX hydroxylase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AM1_5223 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AM1_F0047 nrdA; ribonucleotide-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AM1_2383 nrd; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AM1_F0048 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024