+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acutalibacter muris

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ADH66_00825 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ADH66_00275 DNA-(apurinic or apyrimidinic site) lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E ADH66_05075 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ADH66_08460 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_08465 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_08470 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_00455 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_14420 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ADH66_00825 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ADH66_08270 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E ADH66_05075 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ADH66_01930 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E ADH66_02285 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E ADH66_14935 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E ADH66_00305 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E ADH66_00325 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E ADH66_13835 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E ADH66_09275 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ADH66_14935 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ADH66_01760 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ADH66_01765 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ADH66_18365 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ADH66_01445 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ADH66_06530 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E ADH66_15620 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E ADH66_06545 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ADH66_04635 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ADH66_04630 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ADH66_09370 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ADH66_11620 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E ADH66_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ADH66_18260 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ADH66_17380 ATP-binding protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ADH66_13595 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ADH66_09275 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ADH66_05675 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E ADH66_06265 hypothetical protein K03111 ssb; single-strand DNA-binding protein E ADH66_10580 hypothetical protein K03111 ssb; single-strand DNA-binding protein E ADH66_16760 hypothetical protein K03111 ssb; single-strand DNA-binding protein E ADH66_02375 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E ADH66_03240 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E ADH66_06090 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E ADH66_13055 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E ADH66_18825 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ADH66_03985 helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ADH66_05810 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ADH66_06315 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ADH66_16710 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ADH66_18550 recombinase RecA K03553 recA; recombination protein RecA E ADH66_17680 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ADH66_17665 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ADH66_17685 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ADH66_06615 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ADH66_17775 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E ADH66_17770 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ADH66_18550 recombinase RecA K03553 recA; recombination protein RecA E ADH66_08950 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E ADH66_00020 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E ADH66_18695 DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ADH66_02285 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ADH66_15630 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E ADH66_13605 recombination protein RecR K06187 recR; recombination protein RecR E ADH66_10300 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E ADH66_17680 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ADH66_17665 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ADH66_17685 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E ADH66_01645 helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E ADH66_15585 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E ADH66_17775 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E ADH66_17770 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ADH66_17700 topoisomerase IV K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ADH66_00040 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ADH66_17710 DNA topoisomerase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ADH66_00035 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ADH66_14885 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ADH66_11425 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ADH66_02285 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ADH66_15630 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F ADH66_13605 recombination protein RecR K06187 recR; recombination protein RecR F ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F ADH66_08600 DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ADH66_00305 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F ADH66_00325 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ADH66_06735 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D ADH66_18550 recombinase RecA K03553 recA; recombination protein RecA D ADH66_00595 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D ADH66_10300 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D ADH66_05675 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ADH66_06265 hypothetical protein K03111 ssb; single-strand DNA-binding protein D ADH66_10580 hypothetical protein K03111 ssb; single-strand DNA-binding protein D ADH66_16760 hypothetical protein K03111 ssb; single-strand DNA-binding protein D ADH66_02375 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ADH66_18555 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D ADH66_08460 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_08465 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_08470 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_00455 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADH66_14420 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D ADH66_18615 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024