+F Repair protein KO
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DNA Repair and Recombination Proteins - Acutalibacter muris
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ADH66_00825 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ADH66_00275 DNA-(apurinic or apyrimidinic site) lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E ADH66_05075 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D ADH66_08460 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_08465 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_08470 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_00455 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_14420 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ADH66_00825 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ADH66_08270 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E ADH66_05075 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ADH66_01930 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E ADH66_02285 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E ADH66_14935 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E ADH66_00305 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E ADH66_00325 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E ADH66_13835 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E ADH66_09275 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ADH66_14935 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ADH66_01760 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ADH66_01765 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ADH66_18365 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F ADH66_01445 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ADH66_06530 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E ADH66_15620 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E ADH66_06545 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E ADH66_04635 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E ADH66_04630 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E ADH66_09370 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E ADH66_11620 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E ADH66_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E ADH66_18260 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E ADH66_17380 ATP-binding protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E ADH66_13595 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E ADH66_09275 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ADH66_05675 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E ADH66_06265 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E ADH66_10580 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E ADH66_16760 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E ADH66_02375 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E ADH66_03240 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E ADH66_06090 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E ADH66_13055 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E ADH66_18825 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E ADH66_03985 helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ADH66_05810 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ADH66_06315 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ADH66_16710 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ADH66_18550 recombinase RecA K03553 recA; recombination protein RecA
E ADH66_17680 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ADH66_17665 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ADH66_17685 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E ADH66_06615 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E ADH66_17775 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E ADH66_17770 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E ADH66_18550 recombinase RecA K03553 recA; recombination protein RecA
E ADH66_08950 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E ADH66_00020 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E ADH66_18695 DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ADH66_02285 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E ADH66_15630 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E ADH66_13605 recombination protein RecR K06187 recR; recombination protein RecR
E ADH66_10300 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E ADH66_17680 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ADH66_17665 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ADH66_17685 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E ADH66_01645 helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E ADH66_15585 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E ADH66_17775 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E ADH66_17770 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F ADH66_17700 topoisomerase IV K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ADH66_00040 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ADH66_17710 DNA topoisomerase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F ADH66_00035 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F ADH66_14885 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F ADH66_11425 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F ADH66_02285 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F ADH66_15630 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F ADH66_13605 recombination protein RecR K06187 recR; recombination protein RecR
F ADH66_06210 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F ADH66_11540 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F ADH66_08600 DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F ADH66_00305 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F ADH66_00325 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ADH66_06735 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D ADH66_18550 recombinase RecA K03553 recA; recombination protein RecA
D ADH66_00595 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D ADH66_10300 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ADH66_05675 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ADH66_06265 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D ADH66_10580 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D ADH66_16760 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D ADH66_02375 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ADH66_18555 hypothetical protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D ADH66_08460 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_08465 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_08470 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_00455 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADH66_14420 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
D ADH66_18615 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024